Dear all,
I have started using the perl -d dubugger option to step through my
programs but it seems pretty crude and not too user friendly. Can
anyone reccommend a good freeware graphical debugger? I am writing
fairly simple text manipulation scripts.
Thanks,
Stephen Edwards
--
To unsubsc
Hi folks,
If I want to count the number of times that a match occurs in a line is
there a way of doing this, if there is I have not found it!
e.g.
$line="This is a sentence about matching sentences.\n";
$line=~/sentence/ig;
So I will have matched "sentence" twice and I want to record this.
Hi,
I am using bioperl to get the primary id of a protein out of a flat file as
follows:
while ($seq_obj = $seqio_obj->next_seq){
my $primary_id = $seq_obj->primary_id;
print $primary_id;
}
exit;
However, this returns:
Bio::Seq::RichSeq=HASH(0xa1a1b7c)
How do I get the actual value I want ou
olumn "p09466" does not exist at
extract_ann_uni.pl line 41, line 155."
I know the SQL command is correct because I checked it manually but I don't know
why it says the column doesn't exist?! Please help!!
Quoting Chris Devers <[EMAIL PROTECTED]>:
> On Mon, 14
Hi,
I have a perl script that queries a protein database (uniprot) and puts protein
data from the query into a PostgreSQL table. However, what I would like it to
do is check if the protein is in my database already!!
In my database I have a table with a column containing all the protein_ids so I
Hi,
I have a program that extracts variables from a list of flatfiles and I want to
insert these variables into a PostreSQL database.
I was planning on creating a CSV file with a line allocated for each file which
can then be inserted into the database using the COPY command.
Is the best way t
Hi,
I am writing a perl program that will extract data from a UniProt (this is a
protein database!) flatfile so that I can automatically put data into my
PostgreSQL database. I am taking out name, protein ID number, references etc
from the file.
Does anyone know if there is a script available
