On Wednesday 15 June 2005 09:16 am, Sugrue, Sean wrote:
> There is a program called a regular expression coach
> http://www.weitz.de/regex-coach/ which is a big help with difficult
> Expressions.
[...]
Thank you! I'll take a look.
> When you say "a series ... 3 to 5 characters in length", do you
On Tuesday 14 June 2005 17:34, Jeff 'japhy' Pinyan wrote:
> On Jun 14, Praedor Atrebates said:
> > $dnakmotif = '[KRH][L{3,}V{3,}I{3,}F{3,}Y{3,}A{3,}][KRH];
> >
> > I am just learning as I go here but there are two problems with this, one
> > of which I
On Tuesday 14 June 2005 16:37, Wagner, David --- Senior Programmer Analyst ---
WGO wrote:
[...]
> > I have this (pertinent) code in my script:
> >
> > $dnakmotif ='[KRH][L{3,}V{3,}I{3,}F{3,}Y{3,}A{3,}][KRH];
>
> $dnakmotif ='[KPH](L{3,5}|V{3,5}|I{3,5}|F{3,5}|Y{3,5}|A{3,5}){1,}[KRH]';
> This
I am dinking around with perl for bioinformatics purposes. I have written a
small perl script that reads FASTA formatted sequence files and searches the
sequence therein for user-entered sequences.
This is primarily targetted at protein sequence analysis and for my purposes,
I've included -
