Re: raise an error

2013-09-25 Thread John SJ Anderson
On Wed, Sep 25, 2013 at 6:45 PM, Ken Peng wrote: > Does perl have a way to raise a error in module/class then from caller use > Try::Tiny etc to catch them? Thanks. You can throw an exception with 'die()' -- see 'perldoc -f die' for calling syntax. chrs, john. -- To unsubscribe, e-mail: beginn

Re: raise an error

2013-09-25 Thread Ken Peng
On 2013-9-26 14:22, Shlomi Fish wrote: I'm not using Try::Tiny (though many people recommend it), but I use https://metacpan.org/release/Exception-Class and it works fine. It's not clear what exactly you're trying to do. what I asked is how to raise an error from a module/class correctly? usi

Re: raise an error

2013-09-25 Thread Shlomi Fish
Hi Ken, On Thu, 26 Sep 2013 09:45:45 +0800 Ken Peng wrote: > Does perl have a way to raise a error in module/class then from caller > use Try::Tiny etc to catch them? Thanks. > I'm not using Try::Tiny (though many people recommend it), but I use https://metacpan.org/release/Exception-Class an

Re: checking for file existence

2013-09-25 Thread Shlomi Fish
Hi Renato, people here helped you but here are a few comments. On Wed, 25 Sep 2013 16:38:22 -0300 RENATO AUGUSTO CORREA DOS SANTOS wrote: > Hi, all. > > I am a very begginer in PERL starting today in this mailing list! :-) I > will try to work especially with Bioinformatics. > > I am trying t

Re: hash function and combining function/operator

2013-09-25 Thread David Christensen
On 09/25/13 18:53, Jing Yu wrote: Another look at it, and I think I've pointed you to a wrong way. BLAST might not what you need. Sorry about this. No problem. The more I look at it, the less I believe there is such a pair of functions. David -- To unsubscribe, e-mail: beginners-unsubscr

Re: hash function and combining function/operator

2013-09-25 Thread Jing Yu
Hi David, Another look at it, and I think I've pointed you to a wrong way. BLAST might not what you need. Sorry about this. Jing On 25 Sep 2013, at 03:31, David Christensen wrote: > On 09/24/13 00:12, Dr.Ruud wrote: >> I assume this is about paths and filenames. Have you considered an rsync >>

raise an error

2013-09-25 Thread Ken Peng
Does perl have a way to raise a error in module/class then from caller use Try::Tiny etc to catch them? Thanks. -- To unsubscribe, e-mail: beginners-unsubscr...@perl.org For additional commands, e-mail: beginners-h...@perl.org http://learn.perl.org/

Fwd: checking for file existence

2013-09-25 Thread RENATO AUGUSTO CORREA DOS SANTOS
-- Forwarded message -- From: RENATO AUGUSTO CORREA DOS SANTOS Date: Wed, Sep 25, 2013 at 5:09 PM Subject: Re: checking for file existence To: Peter Ezetta Dear, Thank you so much for your quick help. This list seems to be useful for us begginers. The problem was that I was t

Re: checking for file existence

2013-09-25 Thread Jim
Perhaps file or directory permissions related to the file being checked based on the user running the perl script? Jim On 9/25/2013 4:07 PM, Peter Ezetta wrote: Hi Renato, Welcome to Perl and to the list! I took a quick run through your code, and it's working fine for me. Are you calling it

Re: checking for file existence

2013-09-25 Thread Peter Ezetta
Hi Renato, Welcome to Perl and to the list! I took a quick run through your code, and it's working fine for me. Are you calling it with "perl script.pl "? The behavior you describe almost sounds like you are not providing the argument when you call the script. Hope this was helpful! Peter O

Re: checking for file existence

2013-09-25 Thread Paul Johnson
On Wed, Sep 25, 2013 at 04:38:22PM -0300, RENATO AUGUSTO CORREA DOS SANTOS wrote: > Hi, all. > > I am a very begginer in PERL starting today in this mailing list! :-) I > will try to work especially with Bioinformatics. Welcome! > I am trying to verify the existence of a file in PERL; however,

checking for file existence

2013-09-25 Thread RENATO AUGUSTO CORREA DOS SANTOS
Hi, all. I am a very begginer in PERL starting today in this mailing list! :-) I will try to work especially with Bioinformatics. I am trying to verify the existence of a file in PERL; however, is seems not to work. It always returns "The file $file_seqs does not exist!!!". Do you know where I a