Re: [BangPypers] biopython

2010-06-14 Thread Srinivas Reddy Thatiparthy
Haha... We don't have internet(usually), i manually typed it thinking something else. it usually happens with us programmers. Regards, Srini T. --The real failure is failing to try for success. ___ BangPypers mailing list BangPypers@python.org http://m

Re: [BangPypers] biopython

2010-06-14 Thread Jeffrey Jose
*I'm still waiting* to get that page open. On Tue, Jun 15, 2010 at 10:28 AM, Senthil Kumaran wrote: > On Tue, Jun 15, 2010 at 09:46:14AM +0530, Srinivas Reddy Thatiparthy wrote: > > point your browser to www://docs.python.org. > > > > Just a fun nit-pick. Seems to be a fun protocol to me. :) > >

Re: [BangPypers] biopython

2010-06-14 Thread Senthil Kumaran
On Tue, Jun 15, 2010 at 09:46:14AM +0530, Srinivas Reddy Thatiparthy wrote: > point your browser to www://docs.python.org. > Just a fun nit-pick. Seems to be a fun protocol to me. :) -- Senthil � muito simples ser s�bio. Basta pensar em uma coisa est�pida e n�o fal�-la. --Sam L

Re: [BangPypers] biopython

2010-06-14 Thread Srinivas Reddy Thatiparthy
>i am still waiting for some help. You seem to be posting question after question with out even trying to solve them( i can count 10 in three or four days on varying topics) in Bangpypers and comp.lang.python,literally spamming these lists.You better learn basics first , grab a book of "Lea

Re: [BangPypers] biopython

2010-06-14 Thread Kenneth Gonsalves
On Monday 14 June 2010 19:32:33 madhuri vio wrote: > i have tried this still unable to get an output > > from Bio import Seq > from Bio import SeqIO > from Bio import SeqRecord > > for seq_record in SeqIO.read("ls_MTbH37Rv.fasta", "fasta"): > print seq_record.id > print repr(seq_record.se

Re: [BangPypers] biopython

2010-06-14 Thread Noufal Ibrahim
On Mon, Jun 14, 2010 at 9:15 PM, madhuri vio wrote: > i am still waiting for some help. 1. Read http://www.catb.org/~esr/faqs/smart-questions.html#urgent first and then read the entire article. This is volunteer mailing list. 2. Don't cross post (i.e. post to multiple lists in the same email)

[BangPypers] biopython

2010-06-14 Thread madhuri vio
i am still waiting for some help. -- madhuri :) ___ BangPypers mailing list BangPypers@python.org http://mail.python.org/mailman/listinfo/bangpypers

Re: [BangPypers] biopython

2010-06-14 Thread Guruprasad
Hi, On Mon, Jun 14, 2010 at 7:32 PM, madhuri vio wrote: > i have tried this still unable to get an output > TypeError: Need a file handle, not a string (i.e. not a filename) Isn't this error kind of obvious of what is going wrong? I haven't used any of these stuff but I think passing a file hand

[BangPypers] biopython

2010-06-14 Thread madhuri vio
i have tried this still unable to get an output from Bio import Seq from Bio import SeqIO from Bio import SeqRecord for seq_record in SeqIO.read("ls_MTbH37Rv.fasta", "fasta"): print seq_record.id print repr(seq_record.seq) print len(seq_record) python bio.py Traceback (most recent ca

[BangPypers] biopython

2010-06-14 Thread madhuri vio
i cudnt run this!! and this was the error occured for seq_record in SeqIO.parse("ls_MTbH37Rv. fasta","fasta"): ... print seq_record.id ... print repr(seq_record.seq) ... print len(seq_record) ... Traceback (most recent call last): File "", line 1, in File "/var/lib/python-sup