Bug#1107330: [Debichem-devel] Bug#1107330: openbabel: autopkgtest uses incredible amount of memory on s390x

2025-07-30 Thread Michael Banck
Hi, On Mon, Jul 28, 2025 at 02:52:15PM +, Pranav P via Debichem-devel wrote: > I was currently looking into this package. > In line no. 166 of getinchi.cpp there is a while loop that goes like the > following: > > while((ch=is.get())!=EOF) > > Here ch is of type char. Whether char is signed

Re: [Debichem-devel] Bug#1107330: openbabel: autopkgtest uses incredible amount of memory on s390x

2025-07-30 Thread Michael Banck
Hi, On Mon, Jul 28, 2025 at 02:52:15PM +, Pranav P via Debichem-devel wrote: > I was currently looking into this package. > In line no. 166 of getinchi.cpp there is a while loop that goes like the > following: > > while((ch=is.get())!=EOF) > > Here ch is of type char. Whether char is signed

Bug#1109865: unblock: patroni/4.0.6-1

2025-07-25 Thread Michael Banck
perms.patch: Removed, included upstream. + + -- Michael Banck Sun, 08 Jun 2025 08:52:19 +0200 + patroni (4.0.5-1) unstable; urgency=medium * New upstream release. diff -Nru patroni-4.0.5/debian/patches/fix_conffile_perms.patch patroni-4.0.6/debian/patches/fix_conffile_perms.patch --- patroni-

Bug#1109865: unblock: patroni/4.0.6-1

2025-07-25 Thread Michael Banck
perms.patch: Removed, included upstream. + + -- Michael Banck Sun, 08 Jun 2025 08:52:19 +0200 + patroni (4.0.5-1) unstable; urgency=medium * New upstream release. diff -Nru patroni-4.0.5/debian/patches/fix_conffile_perms.patch patroni-4.0.6/debian/patches/fix_conffile_perms.patch --- patroni-

Re: GNU/Hurd portability patches

2025-07-01 Thread Michael Banck
Hi, On Tue, Jul 01, 2025 at 12:41:50PM -0400, Tom Lane wrote: > Michael Banck writes: > > please find attached the current patches required to get master built > > and the testsuites run on Debian's hurd-i386 port. I have not had the > > time to test the hurd-amd64 por

GNU/Hurd portability patches

2025-06-30 Thread Michael Banck
:00 2001 From: Michael Banck Date: Tue, 10 Jun 2025 12:23:17 +0200 Subject: [PATCH 1/2] Make safeguard against incorrect fd flags for fsync more portable. The current code assumed that O_RDONLY is defined as 0, but this is not universally the case. To fix this, mask the flags with O_ACCMODE an

Re: Safeguards against incorrect fd flags for fsync()

2025-06-24 Thread Michael Banck
Hi, On Wed, Jun 25, 2025 at 08:36:01AM +0900, Michael Paquier wrote: > On Tue, Jun 24, 2025 at 07:51:08AM +0200, Michael Banck wrote: > > I got it working, I had to rebuild gnumach with --enable-apic in order > > to get HPET. With that, the regular build-farm checks (check/ >

Re: Safeguards against incorrect fd flags for fsync()

2025-06-24 Thread Michael Banck
Hi, another update: On Wed, Jun 11, 2025 at 09:24:24PM +0200, Michael Banck wrote: > So it seems the low-resolution timer is the only functional issue right > now. I upgraded my VM to current Debian unstable, but unfortunately that > did not increase the timer resolution is hoped, m

Re: [PATCH gnumach] ioapic.c: Fix default polarity and trigger mode for irqs

2025-06-23 Thread Michael Banck via Bug reports for the GNU Hurd
Hi, On Sun, Jun 22, 2025 at 10:06:40PM +0200, Samuel Thibault wrote: > Damien Zammit, le dim. 22 juin 2025 07:33:46 +, a ecrit: > > 0-13 are on rising edge (legacy) > > 14-N are active-low level triggered. > > > > This allows for PIIX3 chipset to have working IDE, > > if we patch hurd/acpi to

Re: [PATCH mach v4 1/1] Integrate HPET so the functions used for getting time can have a higher accuracy

2025-06-15 Thread Michael Banck via Bug reports for the GNU Hurd
Hi, On Fri, Jun 13, 2025 at 12:42:53AM +, Damien Zammit wrote: > Are you sure you are giving it enough memory? For those hangs I saw, I am pretty sure. However, I had to move to the pae-enabled kernel with 4GB memory in order to make the full testsuite run reliably, it does take slightly more

Hangs in Postgres test suite (was: Re: [PATCH mach v4 1/1] Integrate HPET so the functions used for getting time can have a higher accuracy)

2025-06-14 Thread Michael Banck via Bug reports for the GNU Hurd
Hi, changing the subject, cause this i not related to HPET anymore. On Sat, Jun 14, 2025 at 01:34:28AM +, Damien Zammit wrote: > How does it crash? Do you get a backtrace? No, it just hangs without any output. > What does it actually do during a crash? It runs the Postgres regression test

Re: [PATCH mach v4 1/1] Integrate HPET so the functions used for getting time can have a higher accuracy

2025-06-13 Thread Michael Banck via Bug reports for the GNU Hurd
Hi, On Fri, Jun 13, 2025 at 09:42:51PM +0800, Zhaoming Luo wrote: > Do you have -M q35 with kvm command line? Thanks, that was the missing piece! It is booting fine now, and the timer resolution seems improved, it looks like the Postgres tests pass now (but the system keeps crashing on me so it

Re: [PATCH mach v4 1/1] Integrate HPET so the functions used for getting time can have a higher accuracy

2025-06-13 Thread Michael Banck via Bug reports for the GNU Hurd
On Fri, Jun 13, 2025 at 12:42:53AM +, Damien Zammit wrote: > Michael, > > I tried without -smp 1 flag and it still works here with UP > (--enable-apic --disable-linux-groups). Ok, I did not have --disable-linux-groups yet, if I add that to the configuration, it boots further. However, it the

Re: [PATCH mach v4 1/1] Integrate HPET so the functions used for getting time can have a higher accuracy

2025-06-12 Thread Michael Banck via Bug reports for the GNU Hurd
Hi, On Thu, Jun 12, 2025 at 09:54:22PM +0800, Zhaoming Luo wrote: > On Wed, Jun 11, 2025 at 09:07:10PM +0200, Michael Banck wrote: > > On Mon, Mar 24, 2025 at 12:25:51PM +0800, Zhaoming Luo wrote: > > > Integrate HPET so host_get_time, host_get_time64, and host_get_uptime64 >

Re: Safeguards against incorrect fd flags for fsync()

2025-06-11 Thread Michael Banck
On Tue, Jun 10, 2025 at 09:09:35PM -0400, Tom Lane wrote: > Still, I'd like to be closer to having a working Hurd buildfarm member > before we take a portability risk that would only benefit Hurd. I've spent some more time on this, here's the status beyond make check: 1. The pg_stat_statements en

Re: [PATCH mach v4 1/1] Integrate HPET so the functions used for getting time can have a higher accuracy

2025-06-11 Thread Michael Banck via Bug reports for the GNU Hurd
Hi, On Mon, Mar 24, 2025 at 12:25:51PM +0800, Zhaoming Luo wrote: > Integrate HPET so host_get_time, host_get_time64, and host_get_uptime64 > are more precise. The highest precision can be 10ns when this patch is > applied. Is there something else besides this patch that needs to be done/patched/

Re: Safeguards against incorrect fd flags for fsync()

2025-06-10 Thread Michael Banck
Hi, one more thing: On Tue, Jun 10, 2025 at 12:26:48PM +0200, Michael Banck wrote: > The better way might be to mask the flags with O_ACCMODE and then just > check what you want, like in the attached. I forgot to mention it in the patch, but Samuel Thibault reviewed the patch and sug

Re: Cleaning up historical portability baggage

2025-06-10 Thread Michael Banck
Hi, On Tue, Jun 10, 2025 at 12:59:16PM +0200, Michael Banck wrote: > On Tue, Jun 10, 2025 at 09:05:03AM +1200, Thomas Munro wrote: > > https://savannah.gnu.org/task/?7050 > > 3. make check nowadays succeeds the subscription test that it failed in > the log mentioned in the

Re: Cleaning up historical portability baggage

2025-06-10 Thread Michael Banck
Hi, On Tue, Jun 10, 2025 at 09:05:03AM +1200, Thomas Munro wrote: > On Tue, Jun 10, 2025 at 2:25 AM Andres Freund wrote: > > On 2025-06-09 15:25:22 +0200, Michael Banck wrote: > > > Postgres built fine up and until v15 on the Hurd, so this is a build > > > regression,

Re: Safeguards against incorrect fd flags for fsync()

2025-06-10 Thread Michael Banck
with O_ACCMODE and then just check what you want, like in the attached. Thoughts? Michael [1] https://sourceware.org/git/?p=glibc.git;a=blob;f=sysdeps/mach/hurd/bits/fcntl.h;hb=HEAD#l39 >From 16431e7b1aac9600fac285e77f39bb628a0dea14 Mon Sep 17 00:00:00 2001 From: Michael Banck Date: Tue, 1

Re: Cleaning up historical portability baggage

2025-06-09 Thread Michael Banck
Hi, On Mon, Jun 09, 2025 at 10:25:23AM -0400, Andres Freund wrote: > I think our policy basically is that if it doesn't exist on the BF, it's > unsupported. Also note that Hurd is not listed as a supported OS: > https://www.postgresql.org/docs/devel/supported-platforms.html > > We can't design fo

Re: Cleaning up historical portability baggage

2025-06-09 Thread Michael Banck
Hi Thomas, On Thu, Aug 11, 2022 at 10:02:29PM +1200, Thomas Munro wrote: > Remove configure probe for sys/uio.h. Removing the configure probe is fine, but the patch also changes behavior in the sense that IOV_MAX is now considered defined everywhere but on Windows. However, in the good-old GNU "w

Re: Add log_autovacuum_{vacuum|analyze}_min_duration

2025-06-03 Thread Michael Banck
Hi, On Tue, Jun 03, 2025 at 05:25:40PM +0900, Shinya Kato wrote: > On Tue, Jun 3, 2025 at 4:42 PM Michael Banck wrote: > > On Tue, Jun 03, 2025 at 03:35:20PM +0900, Shinya Kato wrote: > > > I am proposing the introduction of two new GUC parameters, > > > log

Re: Add log_autovacuum_{vacuum|analyze}_min_duration

2025-06-03 Thread Michael Banck
Hi, On Tue, Jun 03, 2025 at 03:35:20PM +0900, Shinya Kato wrote: > I am proposing the introduction of two new GUC parameters, > log_autovacuum_{vacuum|analyze}_min_duration, to replace the existing > log_autovacuum_min_duration. How about adding log_autoanalyze_min_duration instead? That would st

Bug#1103162: nmu: coot_1.1.15+dfsg-1

2025-04-24 Thread Michael Banck
Hi, On Thu, Apr 24, 2025 at 01:05:33PM +0200, Paul Gevers wrote: > On Mon, 21 Apr 2025 12:50:15 +0200 Sebastian Ramacher > wrote: > > > Right. But coot is the only reverse-depdency, and I think it is ok to > > > rebuild it for trixie and then re-assess the situation post-trixie. E.g. > > > we cou

Bug#1103162: nmu: coot_1.1.15+dfsg-1

2025-04-24 Thread Michael Banck
Hi, On Thu, Apr 24, 2025 at 01:05:33PM +0200, Paul Gevers wrote: > On Mon, 21 Apr 2025 12:50:15 +0200 Sebastian Ramacher > wrote: > > > Right. But coot is the only reverse-depdency, and I think it is ok to > > > rebuild it for trixie and then re-assess the situation post-trixie. E.g. > > > we cou

Bug#1057556: elpa: FTBFS: not enough slots available

2025-04-24 Thread Michael Banck
Hi Graham, On Thu, Apr 24, 2025 at 08:28:16AM +, Graham Inggs wrote: > On Sat, 12 Apr 2025 at 12:04, Graham Inggs wrote: > > I'd prefer MIchael to go ahead with 2024.05.001-2 to unstable, but I'm > > also happy to upload 2022.11.001-4 which I was working on previously. > > I'll assume you ar

Re: verify checksums online

2025-04-23 Thread Michael Banck
Hi, On Fri, Apr 18, 2025 at 03:18:26PM -0700, Jeremy Schneider wrote: > On Fri, 18 Apr 2025 17:32:19 -0400 > Ron Johnson wrote: > > > On Fri, Apr 18, 2025 at 5:18 PM Jeremy Schneider > > wrote: > > > > > i think there had been some mailing list discussions years ago? the > > > pg_checksum util

Bug#1103162: nmu: coot_1.1.15+dfsg-1

2025-04-17 Thread Michael Banck
Hi, On Thu, Apr 17, 2025 at 08:41:35AM +0200, Sebastian Ramacher wrote: > On 2025-04-15 17:10:44 +0200, Michael Banck wrote: > > On Tue, Apr 15, 2025 at 08:40:59AM +0200, Sebastian Ramacher wrote: > > > Control: tags -1 moreinfo > > > > > > On 2025-04-14

Bug#1103162: nmu: coot_1.1.15+dfsg-1

2025-04-17 Thread Michael Banck
Hi, On Thu, Apr 17, 2025 at 08:41:35AM +0200, Sebastian Ramacher wrote: > On 2025-04-15 17:10:44 +0200, Michael Banck wrote: > > On Tue, Apr 15, 2025 at 08:40:59AM +0200, Sebastian Ramacher wrote: > > > Control: tags -1 moreinfo > > > > > > On 2025-04-14

Re: Built-in Raft replication

2025-04-16 Thread Michael Banck
Hi, On Wed, Apr 16, 2025 at 10:24:48AM +0500, Andrey Borodin wrote: > I think I can provide some reasons why it cannot be neither extension, > nor any part running within postmaster reign. > > 1. When joining cluster, there’s not PGDATA to run postmaster on top > of it. > > 2. After failover, ol

Bug#1103162: nmu: coot_1.1.15+dfsg-1

2025-04-15 Thread Michael Banck
Hi, On Tue, Apr 15, 2025 at 08:40:59AM +0200, Sebastian Ramacher wrote: > Control: tags -1 moreinfo > > On 2025-04-14 19:49:00 +0200, Michael Banck wrote: > > Package: release.debian.org > > Severity: normal > > User: release.debian@packages.debian.org > &

Bug#1103162: nmu: coot_1.1.15+dfsg-1

2025-04-15 Thread Michael Banck
Hi, On Tue, Apr 15, 2025 at 08:40:59AM +0200, Sebastian Ramacher wrote: > Control: tags -1 moreinfo > > On 2025-04-14 19:49:00 +0200, Michael Banck wrote: > > Package: release.debian.org > > Severity: normal > > User: release.debian@packages.debian.org > &

Bug#1103162: nmu: coot_1.1.15+dfsg-1

2025-04-14 Thread Michael Banck
Package: release.debian.org Severity: normal User: release.debian@packages.debian.org Usertags: binnmu nmu coot_1.1.15+dfsg-1 . ANY . unstable . -m "Rebuild against librdkit-dev"

Bug#1102463: [Debichem-devel] Bug#1102463: cp2k: diff for NMU version 2025.1-1.1

2025-04-14 Thread Michael Banck
Hi Adrian, On Fri, Apr 11, 2025 at 11:42:02AM +0300, Adrian Bunk wrote: > I've uploaded an NMU for cp2k (versioned as 2025.1-1.1). > The diff is attached to this message. Thanks, I've pushed you debdiff to salsa. Michael

Bug#1103162: nmu: coot_1.1.15+dfsg-1

2025-04-14 Thread Michael Banck
Package: release.debian.org Severity: normal User: release.debian@packages.debian.org Usertags: binnmu nmu coot_1.1.15+dfsg-1 . ANY . unstable . -m "Rebuild against librdkit-dev"

Re: pg_recvlogical cannot create slots with failover=true

2025-04-04 Thread Michael Banck
Hi, On Tue, Apr 01, 2025 at 08:01:32AM +, Hayato Kuroda (Fujitsu) wrote: > Attached patch implements it. Since -f/-F option has already been used, -O was > chosen for the short-version. Better idea is very welcomed. Maybe we don't need a short option at all for this, at least initially? Mic

[Bug 1416296] Re: elk-lapw is missing dependency on openmpi-bin

2025-03-30 Thread Michael Banck
This has been fixed in Debian since 5.4.24-1 which has been synced to Ubuntu at least since 20.04 ** Changed in: elkcode (Ubuntu) Status: New => Fix Released ** Changed in: elkcode (Ubuntu) Milestone: None => ubuntu-20.04.6 -- You received this bug notification because you are a memb

Re: Vacuuming the free space map considered harmful?

2025-03-19 Thread Michael Banck
Hi, On Wed, Mar 19, 2025 at 09:53:37AM +0100, Christophe Pettus wrote: > We're tracking down an issue that we've seen in two separate > installations so far, which is that, at the very end of a vacuum, the > vacuum operation starts using *very* high levels of CPU and > (sometimes) I/O, often to th

Bug#1093352: marked as pending in psi4

2025-03-16 Thread Michael Banck
Control: tag -1 pending Hello, Bug #1093352 in psi4 reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/debichem-team/psi4/-/commit/a1bf91870bff89376eb04d27ddc9e209

Bug#1074649: marked as pending in $i

2025-03-16 Thread Michael Banck
Control: tag -1 pending Hello, Bug #1074649 in $i reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/debichem-team/gau2grid/-/commit/64c8c2049c2b8ea07cd1eeeaa3e84b

Bug#1066984: marked as pending in gabedit

2025-03-16 Thread Michael Banck
Control: tag -1 pending Hello, Bug #1066984 in gabedit reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/debichem-team/gabedit/-/commit/1cd8a54638ed38265ac75a6436

Bug#1092786: marked as pending in chemps2

2025-03-16 Thread Michael Banck
Control: tag -1 pending Hello, Bug #1092786 in chemps2 reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/debichem-team/chemps2/-/commit/5ec78bdbdf5e492a032fa6dada

Re: What if Sergey dies?

2025-03-14 Thread Michael Banck via Bug reports for the GNU Hurd
Hi, On Fri, Mar 14, 2025 at 12:44:02PM +, jbra...@dismail.de wrote: > Apoligies for the click baity title... That's the kinda mail that might've better been sent privately, methinks. Michael

Bug#1062204: Newly-created clusters have restrictive postgresql.conf permissions

2025-03-11 Thread Michael Banck
On Tue, Mar 11, 2025 at 08:25:15PM +0100, Michael Banck wrote: > > But I'm not sure if it's an upstream bug, or a latent flaw in the Debian > > packaging. > > I had another look today and I think it is an upstream thing To clarify this a bit: Patroni renames the or

Bug#1062204: Newly-created clusters have restrictive postgresql.conf permissions

2025-03-11 Thread Michael Banck
Hi, On Wed, Jan 31, 2024 at 05:28:34PM +, Ben Harris wrote: > When Patroni creates a new PostgreSQL cluster, the postgresql.conf file in > /etc/patroni// ends up without world read permission. This > means that tools that use pg_wrapper (such as /usr/bin/psql) can't find the > cluster's port n

Re: [PATCH] New predefined role pg_manage_extensions

2025-03-07 Thread Michael Banck
Hi, On Fri, Mar 07, 2025 at 09:17:46AM -0500, Robert Haas wrote: > Why wouldn't the cloud provider just change add 'trusted = true' to > the relevant control files instead of doing this? That would be possible, but maybe the cloud provider is using distribution packages and does not want to muck

Re: Improvement of headless server upgrades

2025-03-05 Thread Michael Banck
Hi, On Wed, Mar 05, 2025 at 04:06:56PM +0100, Marc Haber wrote: > On Tue, 4 Mar 2025 20:39:43 -0500, "Helmut K. C. Tessarek" > wrote: > >Both network "outages" could have been prevented by adding a note at the > >end of the dist-upgrade output. > > > >e.g. something like the following (monospace

Bug#1093086: [Debichem-devel] Bug#1093086: rdkit: FTBFS on big-endian architectures

2025-03-03 Thread Michael Banck
Hi, On Mon, Mar 03, 2025 at 12:22:17PM +0200, Andrius Merkys wrote: > I think this is high time to proceed with architecture limiting. Are you > planning to update rdkit to 202409.5, or are you fine with me performing the > architecture limiting ASAP? I did that now, thanks for the reminder! Mi

Bug#1093086: [Debichem-devel] Bug#1093086: rdkit: FTBFS on big-endian architectures

2025-03-03 Thread Michael Banck
Hi, On Mon, Mar 03, 2025 at 12:22:17PM +0200, Andrius Merkys wrote: > I think this is high time to proceed with architecture limiting. Are you > planning to update rdkit to 202409.5, or are you fine with me performing the > architecture limiting ASAP? I did that now, thanks for the reminder! Mi

Bug#1093086: marked as pending in rdkit

2025-03-03 Thread Michael Banck
Control: tag -1 pending Hello, Bug #1093086 in rdkit reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/debichem-team/rdkit/-/commit/6a1088646ac832c26f79b0da6997ad

Re: [PATCH] New predefined role pg_manage_extensions

2025-02-28 Thread Michael Banck
Hi, On Fri, Jan 17, 2025 at 10:03:17AM +0100, Laurenz Albe wrote: > On Thu, 2024-10-31 at 22:47 +0100, Michael Banck wrote: > > Even though there has not been a lot of discussion on this, here is a > > rebased patch.  I have also added it to the upcoming commitfest. > > I ha

Bug#1075399: Status of psicode

2025-02-16 Thread Michael Banck
Hi, On Fri, Feb 14, 2025 at 08:42:59AM +0100, Andreas Tille wrote: > this is another ping about a decision what to do with psicode. Please > simply state whether it is worth fixing #1075399 of the current version > in Debian and I might spent some time into it. I simply want to know > whether it

Bug#1075399: Status of psicode

2025-02-16 Thread Michael Banck
Hi, On Fri, Feb 14, 2025 at 08:42:59AM +0100, Andreas Tille wrote: > this is another ping about a decision what to do with psicode. Please > simply state whether it is worth fixing #1075399 of the current version > in Debian and I might spent some time into it. I simply want to know > whether it

Bug#1094487: patroni: pg_clonecluster_patroni fails: Error: cluster configuration already exists

2025-02-10 Thread Michael Banck
Hi, On Mon, Feb 10, 2025 at 12:43:54PM +, Ben Harris wrote: > On Mon, 10 Feb 2025, Michael Banck wrote > > I tried to reproduce the reinit failure, but it always worked for me. > > Not sure what is different on your side :-/ > > I could send you the recipe my clusters us

Bug#1094487: patroni: pg_clonecluster_patroni fails: Error: cluster configuration already exists

2025-02-10 Thread Michael Banck
Hi, On Wed, Jan 29, 2025 at 07:01:00PM +, Ben Harris wrote: > On Wed, 29 Jan 2025, Ben Harris wrote I tried to reproduce the reinit failure, but it always worked for me. Not sure what is different on your side :-/ > > If I add "WorkingDirectory=~" to patroni@.service, even on a current > > P

Re: why there is not VACUUM FULL CONCURRENTLY?

2025-01-30 Thread Michael Banck
Hi, On Mon, Jan 13, 2025 at 02:48:31PM +0100, Antonin Houska wrote: > Alvaro Herrera wrote: > > On 2025-Jan-09, Antonin Houska wrote: > > > It seems you accidentally fixed another problem :-) I was referring to the > > > 'lockmode' argument of make_new_heap(). I can try to write a patch for > >

Bug#1094090: [Debichem-devel] Bug#1094090: dbcsr: FTBFS: dh_auto_test: error: cd obj-x86_64-linux-gnu && make -j1 test ARGS\+=--verbose ARGS\+=-j1 returned exit code 2

2025-01-29 Thread Michael Banck
Hi, On Fri, Jan 24, 2025 at 09:20:23PM +0100, Lucas Nussbaum wrote: > During a rebuild of all packages in sid, your package failed to build > on amd64. > > This looks similar to #1087439 but this one is reproducible on amd64. Hrm, this one seems to be a runtime OpenMPI failure, #1087439 appears

Bug#1094090: [Debichem-devel] Bug#1094090: dbcsr: FTBFS: dh_auto_test: error: cd obj-x86_64-linux-gnu && make -j1 test ARGS\+=--verbose ARGS\+=-j1 returned exit code 2

2025-01-29 Thread Michael Banck
Hi, On Fri, Jan 24, 2025 at 09:20:23PM +0100, Lucas Nussbaum wrote: > During a rebuild of all packages in sid, your package failed to build > on amd64. > > This looks similar to #1087439 but this one is reproducible on amd64. Hrm, this one seems to be a runtime OpenMPI failure, #1087439 appears

Bug#1093605: marked as pending in patroni

2025-01-22 Thread Michael Banck
Control: tag -1 pending Hello, Bug #1093605 in patroni reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/postgresql/patroni/-/commit/77d5121db125615b5d321cb6047d0

Bug#1093413: marked as pending in openmolcas

2025-01-20 Thread Michael Banck
Control: tag -1 pending Hello, Bug #1093413 in openmolcas reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/debichem-team/openmolcas/-/commit/6224d29de7381b7abb11

Bug#1087987: [Debichem-devel] Bug#1087987: cp2k: build-depends on libelpa-dev which is no longer available on 32-bit architectures

2025-01-20 Thread Michael Banck
Hi, On Thu, Nov 21, 2024 at 01:17:23PM +0100, Emilio Pozuelo Monfort wrote: > Your package build-depends on libelpa-dev, but that package has been > removed from armel, armhf and i386 due to the removal of OpenMPI and > the lack of support for MPICH. Thus cp2k should drop elpa support > on those a

Bug#1087987: [Debichem-devel] Bug#1087987: cp2k: build-depends on libelpa-dev which is no longer available on 32-bit architectures

2025-01-20 Thread Michael Banck
Hi, On Thu, Nov 21, 2024 at 01:17:23PM +0100, Emilio Pozuelo Monfort wrote: > Your package build-depends on libelpa-dev, but that package has been > removed from armel, armhf and i386 due to the removal of OpenMPI and > the lack of support for MPICH. Thus cp2k should drop elpa support > on those a

Bug#1075670: marked as pending in xmakemol

2025-01-19 Thread Michael Banck
Control: tag -1 pending Hello, Bug #1075670 in xmakemol reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/debichem-team/xmakemol/-/commit/4b82216f1268cff8106867dc

Bug#1093086: [Debichem-devel] Bug#1093086: rdkit: FTBFS on big-endian architectures

2025-01-15 Thread Michael Banck
forwarded 1093086 https://github.com/rdkit/rdkit/issues/8172 thanks Hi, On Thu, Jan 16, 2025 at 09:39:08AM +0200, Andrius Merkys wrote: > However, the issue with FTBFS on big-endian architectures persists. Yeah :-/ > We may have to drop the support for big-endians as well. I opened an upstream

Bug#1093086: [Debichem-devel] Bug#1093086: rdkit: FTBFS on big-endian architectures

2025-01-15 Thread Michael Banck
forwarded 1093086 https://github.com/rdkit/rdkit/issues/8172 thanks Hi, On Thu, Jan 16, 2025 at 09:39:08AM +0200, Andrius Merkys wrote: > However, the issue with FTBFS on big-endian architectures persists. Yeah :-/ > We may have to drop the support for big-endians as well. I opened an upstream

Re: [PATCH] New predefined role pg_manage_extensions

2025-01-15 Thread Michael Banck
Hi, On Thu, Jan 16, 2025 at 04:09:44PM +0900, Shinya Kato wrote: > On Thu, Jan 16, 2025 at 3:31 PM Michael Banck wrote: > > I do think having a whitelist of allowed-to-be-installed extensions > > (similar/like https://github.com/dimitri/pgextwlist) makes sense > > ad

Bug#1093086: [Debichem-devel] Bug#1093086: Bug#1093086: Bug#1093086: rdkit: FTBFS on big-endian architectures

2025-01-15 Thread Michael Banck
Hi, On Wed, Jan 15, 2025 at 05:36:48PM +0100, Michael Banck wrote: > On Wed, Jan 15, 2025 at 04:56:10PM +0200, Andrius Merkys wrote: > > On 2025-01-15 09:54, Andrius Merkys wrote: > > > From a quick glance it seems that a lot of problems are related to > > > Python p

Bug#1093086: [Debichem-devel] Bug#1093086: Bug#1093086: Bug#1093086: rdkit: FTBFS on big-endian architectures

2025-01-15 Thread Michael Banck
Hi, On Wed, Jan 15, 2025 at 05:36:48PM +0100, Michael Banck wrote: > On Wed, Jan 15, 2025 at 04:56:10PM +0200, Andrius Merkys wrote: > > On 2025-01-15 09:54, Andrius Merkys wrote: > > > From a quick glance it seems that a lot of problems are related to > > > Python p

Bug#1093086: [Debichem-devel] Bug#1093086: Bug#1093086: rdkit: FTBFS on big-endian architectures

2025-01-15 Thread Michael Banck
Hi, On Wed, Jan 15, 2025 at 04:56:10PM +0200, Andrius Merkys wrote: > On 2025-01-15 09:54, Andrius Merkys wrote: > > From a quick glance it seems that a lot of problems are related to > > Python pickle reading. Upstream has made some fixes related to > > endianness in version 202409.4 [1], thus p

Bug#1093086: [Debichem-devel] Bug#1093086: Bug#1093086: rdkit: FTBFS on big-endian architectures

2025-01-15 Thread Michael Banck
Hi, On Wed, Jan 15, 2025 at 04:56:10PM +0200, Andrius Merkys wrote: > On 2025-01-15 09:54, Andrius Merkys wrote: > > From a quick glance it seems that a lot of problems are related to > > Python pickle reading. Upstream has made some fixes related to > > endianness in version 202409.4 [1], thus p

Re: Purpose of wal_init_zero

2025-01-15 Thread Michael Banck
Hi, On Wed, Jan 15, 2025 at 09:12:17AM +, Andy Fan wrote: > I can understand that "the file space has really been allocated", but > why do we care about this? > > One reason I can think of is it has something with "out-of-disk-space" > sistuation, even though what's the benefit of it since we

Re: why there is not VACUUM FULL CONCURRENTLY?

2025-01-13 Thread Michael Banck
Hi, On Sat, Jan 11, 2025 at 09:01:54AM -0500, Andrew Dunstan wrote: > On 2025-01-09 Th 8:35 AM, Alvaro Herrera wrote: > > Maybe we should have a new toplevel command. Some ideas that have been > > thrown around: > > > > - RETABLE (it's like REINDEX, but for tables) > > - ALTER TABLE SQUEEZE > >

Bug#1083076: [Debichem-devel] Bug#1083076: Bug#1083076: 1083076 affects armel too

2025-01-11 Thread Michael Banck
Hi Andrius, On Mon, Dec 23, 2024 at 01:27:35PM +0200, Andrius Merkys wrote: > Since the freeze is drawing near, and rdkit is blocking a lot of packages, I > would suggest considering shipping rdkit without 32bit support in trixie. > This would cause all its dependencies to follow suit, which is no

Bug#1083076: [Debichem-devel] Bug#1083076: Bug#1083076: 1083076 affects armel too

2025-01-11 Thread Michael Banck
Hi Andrius, On Mon, Dec 23, 2024 at 01:27:35PM +0200, Andrius Merkys wrote: > Since the freeze is drawing near, and rdkit is blocking a lot of packages, I > would suggest considering shipping rdkit without 32bit support in trixie. > This would cause all its dependencies to follow suit, which is no

Re: Adding extension default version to \dx

2025-01-10 Thread Michael Banck
Hi, On Fri, Jan 10, 2025 at 01:04:14PM +0100, Magnus Hagander wrote: > In an effort to make at least a couple of more people realize they have to > run ALTER EXTENSION UPDATE after they've upgraded an extension, as well as > make it a bit easier to realize when you have to do it, I propose we add

Re: [PATCH] New predefined role pg_manage_extensions

2024-12-31 Thread Michael Banck
Hi, first, sorry for the late reply :-/ On Mon, Nov 18, 2024 at 11:26:40AM +0500, Kirill Reshke wrote: > On Fri, 1 Nov 2024 at 02:47, Michael Banck wrote: > > Even though there has not been a lot of discussion on this, here is a > > rebased patch. I have also added it

Re: [PATCH] Add support for displaying database service in psql prompt

2024-12-19 Thread Michael Banck
Hi, On Wed, Dec 18, 2024 at 03:17:36PM +0900, Michael Paquier wrote: > On Tue, Dec 17, 2024 at 09:42:36AM +0100, Michael Banck wrote: > > Done. > > > > V3 attached. > > Done. Thanks! Michael

Re: [PATCH] Add support for displaying database service in psql prompt

2024-12-17 Thread Michael Banck
Hi, On Tue, Dec 17, 2024 at 04:43:21PM +0900, Michael Paquier wrote: > On Mon, Dec 16, 2024 at 10:57:49PM +0100, Michael Banck wrote: > > Thanks, I have added the documentation now in v2. > > The doc additions seem fine to me. I've just grabbed three tiny nits, > nothin

Re: [PATCH] Add support for displaying database service in psql prompt

2024-12-16 Thread Michael Banck
Hi Michael, On Tue, Dec 10, 2024 at 04:38:24PM +0900, Michael Paquier wrote: > On Thu, Nov 28, 2024 at 09:17:23PM +0100, Michael Banck wrote: > > On Tue, Nov 19, 2024 at 07:47:58PM -0500, Greg Sabino Mullane wrote: > > > Compiled and tested: works fine, so +1 from me. Honestl

Bug#1089936: ITS: cthumb

2024-12-15 Thread Michael Banck
Hi, On Sat, Dec 14, 2024 at 10:03:55PM +0100, Andreas Tille wrote: > I'm interested in salvaging your package cthumb, in accordance with the > Package Salvaging procedure outlined in the Developers Reference[1]. Ok, go ahead! Michael

[patch] Make "invalid record length at : expected at least 24, got 0" message less scary

2024-11-30 Thread Michael Banck
ery to check for an end-of-WAL condition at that spot. Michael >From 015a9bfb2bd57f37f7c9601e9014d7560b76c21d Mon Sep 17 00:00:00 2001 From: Michael Banck Date: Sat, 30 Nov 2024 11:51:34 +0100 Subject: [PATCH v1] Re-introduce less scary message for possible end-of-WAL invalid record. A lot of

Re: [PATCH] Add support for displaying database service in psql prompt

2024-11-28 Thread Michael Banck
Hi, On Tue, Nov 19, 2024 at 07:47:58PM -0500, Greg Sabino Mullane wrote: > Compiled and tested: works fine, so +1 from me. Honestly, I was surprised > %s was still available. :) Thanks. Was that full review? You kept the commitfest item in "Needs Review" state. Michael

Bug#1083076: [Debichem-devel] Bug#1083076: 1083076 affects armel too

2024-11-28 Thread Michael Banck
Hi, On Thu, Nov 28, 2024 at 09:40:01AM +0200, Andrius Merkys wrote: > The same issue persists on armel too. I think we should add autopkgtest to > possibly identify other architectures having this issue. Looks like to be a general 32bit issue, the same testsuite failures can be seen on i386 as we

Bug#1083076: [Debichem-devel] Bug#1083076: 1083076 affects armel too

2024-11-28 Thread Michael Banck
Hi, On Thu, Nov 28, 2024 at 09:40:01AM +0200, Andrius Merkys wrote: > The same issue persists on armel too. I think we should add autopkgtest to > possibly identify other architectures having this issue. Looks like to be a general 32bit issue, the same testsuite failures can be seen on i386 as we

Bug#1088354: marked as pending in rdkit

2024-11-27 Thread Michael Banck
Control: tag -1 pending Hello, Bug #1088354 in rdkit reported by you has been fixed in the Git repository and is awaiting an upload. You can see the commit message below and you can check the diff of the fix at: https://salsa.debian.org/debichem-team/rdkit/-/commit/65c2a2c8029d67fc19e66c6d220620

Bug#1055110: [Debichem-devel] Bug#1055110: libgridxc builds with -march=native

2024-11-14 Thread Michael Banck
Hi, one clarification: On Thu, Nov 14, 2024 at 09:20:09PM +0100, Michael Banck wrote: > libgridxc is not setting that, maybe cmake did in the past? Guess I was grepping only through the 2.0.2 source tree, as they did fix it upstream for that release, sorry: https://gitlab.com/siesta-proj

Bug#1055110: [Debichem-devel] Bug#1055110: libgridxc builds with -march=native

2024-11-14 Thread Michael Banck
Hi, one clarification: On Thu, Nov 14, 2024 at 09:20:09PM +0100, Michael Banck wrote: > libgridxc is not setting that, maybe cmake did in the past? Guess I was grepping only through the 2.0.2 source tree, as they did fix it upstream for that release, sorry: https://gitlab.com/siesta-proj

Re: Parallel workers stats in pg_stat_database

2024-11-12 Thread Michael Banck
Hi, On Tue, Nov 12, 2024 at 03:56:11PM +0100, Benoit Lobréau wrote: > On 11/12/24 15:05, Michael Banck wrote: > > I was wondering about the weird new column name workers_to_launch when I > > read the commit message - AFAICT this has been an internal term so far, > > and this

Re: Parallel workers stats in pg_stat_database

2024-11-12 Thread Michael Banck
Hi, On Fri, Oct 11, 2024 at 09:33:48AM +0200, Guillaume Lelarge wrote: > FWIW, with the recent commits of the pg_stat_statements patch, you need a > slight change in the patch I sent on this thread. You'll find a patch > attached to do that. You need to apply it after a rebase to master. > > -

Re: [PATCH] New predefined role pg_manage_extensions

2024-10-31 Thread Michael Banck
Hi, Even though there has not been a lot of discussion on this, here is a rebased patch. I have also added it to the upcoming commitfest. On Sat, Jan 13, 2024 at 09:20:40AM +0100, Michael Banck wrote: > On Fri, Jan 12, 2024 at 04:13:27PM +0100, Jelte Fennema-Nio wrote: > > But I'm

[PATCH] Add support for displaying database service in psql prompt

2024-10-31 Thread Michael Banck
o me during a recent customer training. I chose the '%s' tag for it. I had to add the service to PGConn as PQservice (first patch) to libpq and then use it in psql in the second patch. Michael >From f876195acb797a5ac58c17409fdd75d18581c292 Mon Sep 17 00:00:00 2001 From: Michael Banck

Re: trying again to get incremental backup

2024-10-28 Thread Michael Banck
Hi, So I am a bit confused about the status of the tar format support, and after re-reading the thread (or at least grepping it for ' tar '), this wasn't really much discussed here either. On Wed, Jun 14, 2023 at 02:46:48PM -0400, Robert Haas wrote: > - We only know how to operate on directories,

Re: Changing the state of data checksums in a running cluster

2024-09-30 Thread Michael Banck
Hi, On Mon, Sep 30, 2024 at 11:21:30PM +0200, Daniel Gustafsson wrote: > > Yeah, I think a view like pg_stat_progress_checksums would work. > > Added in the attached version. It probably needs some polish (the docs for > sure do) but it's at least a start. Just a nitpick, but we call it data_ch

Re: [PATCH] Extend ALTER OPERATOR to support adding commutator, negator, hashes, and merges

2024-09-24 Thread Michael Banck
Hi, On Tue, Oct 24, 2023 at 11:42:15AM -0400, Tom Lane wrote: > Christoph Berg writes: > > Anyway, if this doesn't raise any "oh we didn't think of this" > > concerns, we'll just remove the old operators in pgsphere. > > Well, the idea was exactly to forbid that sort of setup. > However, if we g

Bug#1077055: [Debichem-devel] Bug#1077055: Bug#1077055: Bug#1077055: Bug#1077055: postgresql-16-rdkit: inchi support not included in rdkit build

2024-09-24 Thread Michael Banck
Hi, On Tue, Sep 24, 2024 at 05:42:50PM +0200, Michael Banck wrote: > On Tue, Sep 24, 2024 at 05:22:58PM +0300, Andrius Merkys wrote: > > On 2024-09-24 17:09, David Lounsbrough wrote: > > > I ran this inside my Docker container, it says the latest version of the > >

Bug#1077055: [Debichem-devel] Bug#1077055: Bug#1077055: Bug#1077055: postgresql-16-rdkit: inchi support not included in rdkit build

2024-09-24 Thread Michael Banck
Hi, On Tue, Sep 24, 2024 at 05:22:58PM +0300, Andrius Merkys wrote: > On 2024-09-24 17:09, David Lounsbrough wrote: > > I ran this inside my Docker container, it says the latest version of the > > package is installed: > > > > # apt-get -s install postgresql-16-rdkit > > Reading package lists...

Bug#1075399: Status of psicode

2024-09-21 Thread Michael Banck
Hi, On Sat, Sep 21, 2024 at 07:36:28AM +0200, Andreas Tille wrote: > Am Fri, Sep 20, 2024 at 10:43:29PM +0200 schrieb Michael Banck: > > > There's a link to the github page in the top bar of the > > > https://psicode.org website, it is at https://github.com/psi4/psi4/

Bug#1075399: Status of psicode

2024-09-21 Thread Michael Banck
Hi, On Sat, Sep 21, 2024 at 07:36:28AM +0200, Andreas Tille wrote: > Am Fri, Sep 20, 2024 at 10:43:29PM +0200 schrieb Michael Banck: > > > There's a link to the github page in the top bar of the > > > https://psicode.org website, it is at https://github.com/psi4/psi4/

Bug#1075399: [Debichem-devel] Bug#1075399: Status of psicode

2024-09-20 Thread Michael Banck
Hi, On Fri, Sep 20, 2024 at 09:27:28PM +0200, Michael Banck wrote: > On Fri, Sep 20, 2024 at 09:17:43PM +0200, Andreas Tille wrote: > > psicode showed up today as Bug of the Day[1] candidate. I checked the > > situation upstream[2] but I need to admit I do not have any clue

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