[OMPI users] Serveral issue in mpirun on macosx 10.8.2

2012-12-12 Thread Extreme Programming
Hi, I have just installed openmpi 1.7 on my macosx 10.8.2 because i need
java bining.
Installation works fine, compilation too but when i executed the "mpirun -n
4 myfile" i get this error:

MacBook-Pro:Desktop rainmaker$ mpirun -n 4 a.out
[MacBook-Pro.local:18481] mca: base: component_find: unable to open
/usr/local/lib/openmpi/mca_ess_slurmd:
dlopen(/usr/local/lib/openmpi/mca_ess_slurmd.so, 9): Symbol not found:
_orte_jmap_t_class
  Referenced from: /usr/local/lib/openmpi/mca_ess_slurmd.so
  Expected in: flat namespace
 in /usr/local/lib/openmpi/mca_ess_slurmd.so (ignored)
[MacBook-Pro.local:18481] mca: base: component_find: unable to open
/usr/local/lib/openmpi/mca_errmgr_default:
dlopen(/usr/local/lib/openmpi/mca_errmgr_default.so, 9): Symbol not found:
_orte_errmgr_base_error_abort
  Referenced from: /usr/local/lib/openmpi/mca_errmgr_default.so
  Expected in: flat namespace
 in /usr/local/lib/openmpi/mca_errmgr_default.so (ignored)
[MacBook-Pro.local:18481] mca: base: component_find: unable to open
/usr/local/lib/openmpi/mca_routed_cm:
dlopen(/usr/local/lib/openmpi/mca_routed_cm.so, 9): Symbol not found:
_orte_message_event_t_class
  Referenced from: /usr/local/lib/openmpi/mca_routed_cm.so
  Expected in: flat namespace
 in /usr/local/lib/openmpi/mca_routed_cm.so (ignored)
[MacBook-Pro.local:18481] mca: base: component_find: unable to open
/usr/local/lib/openmpi/mca_routed_linear:
dlopen(/usr/local/lib/openmpi/mca_routed_linear.so, 9): Symbol not found:
_orte_message_event_t_class
  Referenced from: /usr/local/lib/openmpi/mca_routed_linear.so
  Expected in: flat namespace
 in /usr/local/lib/openmpi/mca_routed_linear.so (ignored)
[MacBook-Pro.local:18481] mca: base: component_find: unable to open
/usr/local/lib/openmpi/mca_grpcomm_basic:
dlopen(/usr/local/lib/openmpi/mca_grpcomm_basic.so, 9): Symbol not found:
_opal_profile
  Referenced from: /usr/local/lib/openmpi/mca_grpcomm_basic.so
  Expected in: flat namespace
 in /usr/local/lib/openmpi/mca_grpcomm_basic.so (ignored)
[MacBook-Pro.local:18481] mca: base: component_find: unable to open
/usr/local/lib/openmpi/mca_grpcomm_hier:
dlopen(/usr/local/lib/openmpi/mca_grpcomm_hier.so, 9): Symbol not found:
_orte_daemon_cmd_processor
  Referenced from: /usr/local/lib/openmpi/mca_grpcomm_hier.so
  Expected in: flat namespace
 in /usr/local/lib/openmpi/mca_grpcomm_hier.so (ignored)
[MacBook-Pro:18481] *** Process received signal ***
[MacBook-Pro:18481] Signal: Segmentation fault: 11 (11)
[MacBook-Pro:18481] Signal code: Address not mapped (1)
[MacBook-Pro:18481] Failing at address: 0x14
[MacBook-Pro:18481] [ 0] 2   libsystem_c.dylib
0x7fff820308ea _sigtramp + 26
[MacBook-Pro:18481] [ 1] 3   ???
0x7fff59070458 0x0 + 140734687020120
[MacBook-Pro:18481] [ 2] 4   libopen-rte.5.dylib
0x000106bd7658 orte_rmaps_base_map_job + 984
[MacBook-Pro:18481] [ 3] 5   libopen-rte.5.dylib
0x000106c1a0a0 opal_libevent2019_event_base_loop + 1888
[MacBook-Pro:18481] [ 4] 6   mpirun
 0x000106b916e1 orterun + 5137
[MacBook-Pro:18481] [ 5] 7   mpirun
 0x000106b90290 main + 32
[MacBook-Pro:18481] [ 6] 8   libdyld.dylib
0x7fff8ac597e1 start + 0
[MacBook-Pro:18481] [ 7] 9   ???
0x0004 0x0 + 4
[MacBook-Pro:18481] *** End of error message ***
Segmentation fault: 11


for resolving it, i have exported the LD_LIBRARY_PATH = /usr/local/bin and
I used the same configuration of my last openmpi's installation.
Please help me to solve this issue.

Thank you very much.


Re: [OMPI users] users Digest, Vol 2435, Issue 1

2012-12-12 Thread Extreme Programming
 thank you for your reply and I apologize for my English and for my
mistake, in every way I have had configured OPMI with this /usr/local/
prefix.


2012/12/12 

> Send users mailing list submissions to
> us...@open-mpi.org
>
> To subscribe or unsubscribe via the World Wide Web, visit
> http://www.open-mpi.org/mailman/listinfo.cgi/users
> or, via email, send a message with subject or body 'help' to
> users-requ...@open-mpi.org
>
> You can reach the person managing the list at
> users-ow...@open-mpi.org
>
> When replying, please edit your Subject line so it is more specific
> than "Re: Contents of users digest..."
>
>
> Today's Topics:
>
>1. Re: Live process migration (Ifeanyi)
>2. Re: Live process migration (Ifeanyi)
>3. Re: Live process migration (Ifeanyi)
>4. openmpi-1.7rc5 cannot install when build with ./configure
>   --with-ft=cr (Ifeanyi)
>5. Re: OpenMPI-1.6.3 MinGW64 buildup on Windows 7 (Ilias Miroslav)
>6. Re: OpenMPI-1.6.3 MinGW64 buildup on Windows 7 (Ilias Miroslav)
>7. Serveral issue in mpirun on macosx 10.8.2 (Extreme Programming)
>8. Re: OpenMPI-1.6.3 MinGW64 buildup on Windows 7 (Damien Hocking)
>9. Re: Serveral issue in mpirun on macosx 10.8.2 (Ralph Castain)
>   10. Re: openmpi-1.7rc5 cannot install when build with ./configure
>   --with-ft=cr (Ralph Castain)
>   11. problem configuring openmpi-1.6.4a1r27643 on Linux (Siegmar Gross)
>
>
> --
>
> Message: 1
> Date: Wed, 12 Dec 2012 09:58:45 +1100
> From: Ifeanyi 
> Subject: Re: [OMPI users] Live process migration
> To: Open MPI Users 
> Message-ID:
> <
> camxrty8+7jtgnznj30ossz-btt7sdgpb7erwkjbnbxpb7sh...@mail.gmail.com>
> Content-Type: text/plain; charset="iso-8859-1"
>
> Thanks Josh.
>
> I will give a go.
>
> Regards - Ifeanyi
>
> On Wed, Dec 12, 2012 at 3:19 AM, Josh Hursey 
> wrote:
>
> > Process migration was implemented in Open MPI and working in the trunk a
> > couple of years ago. It has not been well maintained for a few years
> though
> > (hopefully that will change one day). So you can try it, but your results
> > may vary.
> >
> > Some details are at the link below:
> >   http://osl.iu.edu/research/ft/ompi-cr/tools.php#ompi-migrate
> >
> > On Mon, Dec 10, 2012 at 10:39 PM, Ifeanyi 
> wrote:
> >
> >> Hi all,
> >>
> >> Just wondering if live process migration of processes is supported in
> >> open mpi?
> >>
> >> or any idea of how to do live migration of processes pls.
> >>
> >> Regards,
> >> Ifeanyi
> >>
> >> ___
> >> users mailing list
> >> us...@open-mpi.org
> >> http://www.open-mpi.org/mailman/listinfo.cgi/users
> >>
> >
> >
> >
> > --
> > Joshua Hursey
> > Assistant Professor of Computer Science
> > University of Wisconsin-La Crosse
> > http://cs.uwlax.edu/~jjhursey
> >
> > ___
> > users mailing list
> > us...@open-mpi.org
> > http://www.open-mpi.org/mailman/listinfo.cgi/users
> >
> -- next part --
> HTML attachment scrubbed and removed
>
> --
>
> Message: 2
> Date: Wed, 12 Dec 2012 13:04:59 +1100
> From: Ifeanyi 
> Subject: Re: [OMPI users] Live process migration
> To: Open MPI Users 
> Message-ID:
> <
> camxrty8u0zwyzkjslhvyuuhpwusbjvjbqj3vo8vdmrqbugb...@mail.gmail.com>
> Content-Type: text/plain; charset="iso-8859-1"
>
> Hi Josh,
>
> I can checkpoint but cannot migrate.
>
> when I type ~openmpi-1.6# ompi-migrate ...  I got this problem
> bash: ompi-migrate: command not found
>
> Please assist.
>
> Regards - Ifeanyi
>
>
>
> On Wed, Dec 12, 2012 at 3:19 AM, Josh Hursey 
> wrote:
>
> > Process migration was implemented in Open MPI and working in the trunk a
> > couple of years ago. It has not been well maintained for a few years
> though
> > (hopefully that will change one day). So you can try it, but your results
> > may vary.
> >
> > Some details are at the link below:
> >   http://osl.iu.edu/research/ft/ompi-cr/tools.php#ompi-migrate
> >
> > On Mon, Dec 10, 2012 at 10:39 PM, Ifeanyi 
> wrote:
> >
> >> Hi all,
> >>
> >> Just wondering if live process migration of processes is supported in
> >> open mpi?
> >>
> >> or any