[O-MPI users] Error on mpirun in Redhat Fedora Core 4
Hi, I got an error when tried the mpirun on mpi program. The following is the error message: [clement@kfc TestMPI]$ mpicc -g -o test main.c [clement@kfc TestMPI]$ mpirun -np 2 test mpirun noticed that job rank 1 with PID 0 on node "localhost" exited on signal 11. [kfc:28466] ERROR: A daemon on node localhost failed to start as expected. [kfc:28466] ERROR: There may be more information available from [kfc:28466] ERROR: the remote shell (see above). [kfc:28466] The daemon received a signal 11. 1 additional process aborted (not shown) [clement@kfc TestMPI]$ I am using openmpi-1.0rc4 and running on Linux Redhat Fedora Core 4. The kernal is 2.6.12-1.1456_FC4. My building procedure is as below: 1. ./configure --prefix=/home/clement/openmpi --with-devel-headers 2. make all install 3. login root. add openmpi's path and lib in /etc/bashrc 4. see the $PATH and $LD_LIBRARY_PATH as below [clement@kfc TestMPI]$ echo $PATH /usr/java/jdk1.5.0_05/bin:/home/clement/openmpi/bin:/usr/java/jdk1.5.0_05/bin:/home/clement/mpich-1.2.7/bin:/usr/kerberos/bin:/usr/local/bin:/usr/bin:/bin:/usr/X11R6/bin:/home/clement/bin [clement@kfc TestMPI]$ echo $LD_LIBRARY_PATH /home/clement/openmpi/lib [clement@kfc TestMPI]$ 5. go to mpi program's directory 6. mpicc -g -o test main.c 7. mpirun -np 2 test Any idea of this problem. Many thanks. Regards, Clement -- Clement Kam Man Chu Research Assistant School of Computer Science & Software Engineering Monash University, Caulfield Campus Ph: 61 3 9903 1964
Re: [O-MPI users] Error on mpirun in Redhat Fedora Core 4
I have tried the latest version (rc5 8053), but the error is still here. Jeff Squyres wrote: We've actually made quite a few bug fixes since RC4 (RC5 is not available yet). Would you mind trying with a nightly snapshot tarball? (there were some SVN commits last night after the nightly snapshot was made; I've just initiated another snapshot build -- r8085 should be on the web site within an hour or so) On Nov 10, 2005, at 4:38 AM, Clement Chu wrote: Hi, I got an error when tried the mpirun on mpi program. The following is the error message: [clement@kfc TestMPI]$ mpicc -g -o test main.c [clement@kfc TestMPI]$ mpirun -np 2 test mpirun noticed that job rank 1 with PID 0 on node "localhost" exited on signal 11. [kfc:28466] ERROR: A daemon on node localhost failed to start as expected. [kfc:28466] ERROR: There may be more information available from [kfc:28466] ERROR: the remote shell (see above). [kfc:28466] The daemon received a signal 11. 1 additional process aborted (not shown) [clement@kfc TestMPI]$ I am using openmpi-1.0rc4 and running on Linux Redhat Fedora Core 4. The kernal is 2.6.12-1.1456_FC4. My building procedure is as below: 1. ./configure --prefix=/home/clement/openmpi --with-devel-headers 2. make all install 3. login root. add openmpi's path and lib in /etc/bashrc 4. see the $PATH and $LD_LIBRARY_PATH as below [clement@kfc TestMPI]$ echo $PATH /usr/java/jdk1.5.0_05/bin:/home/clement/openmpi/bin:/usr/java/ jdk1.5.0_05/bin:/home/clement/mpich-1.2.7/bin:/usr/kerberos/bin:/usr/ local/bin:/usr/bin:/bin:/usr/X11R6/bin:/home/clement/bin [clement@kfc TestMPI]$ echo $LD_LIBRARY_PATH /home/clement/openmpi/lib [clement@kfc TestMPI]$ 5. go to mpi program's directory 6. mpicc -g -o test main.c 7. mpirun -np 2 test Any idea of this problem. Many thanks. Regards, Clement -- Clement Kam Man Chu Research Assistant School of Computer Science & Software Engineering Monash University, Caulfield Campus Ph: 61 3 9903 1964 ___ users mailing list us...@open-mpi.org http://www.open-mpi.org/mailman/listinfo.cgi/users -- Clement Kam Man Chu Research Assistant School of Computer Science & Software Engineering Monash University, Caulfield Campus Ph: 61 3 9903 1964
Re: [O-MPI users] Error on mpirun in Redhat Fedora Core 4
btl: self (MCA v1.0, API v1.0, Component v1.0) MCA btl: sm (MCA v1.0, API v1.0, Component v1.0) MCA btl: tcp (MCA v1.0, API v1.0, Component v1.0) MCA topo: unity (MCA v1.0, API v1.0, Component v1.0) MCA gpr: null (MCA v1.0, API v1.0, Component v1.0) MCA gpr: proxy (MCA v1.0, API v1.0, Component v1.0) MCA gpr: replica (MCA v1.0, API v1.0, Component v1.0) MCA iof: proxy (MCA v1.0, API v1.0, Component v1.0) MCA iof: svc (MCA v1.0, API v1.0, Component v1.0) MCA ns: proxy (MCA v1.0, API v1.0, Component v1.0) MCA ns: replica (MCA v1.0, API v1.0, Component v1.0) MCA oob: tcp (MCA v1.0, API v1.0, Component v1.0) MCA ras: dash_host (MCA v1.0, API v1.0, Component v1.0) MCA ras: hostfile (MCA v1.0, API v1.0, Component v1.0) MCA ras: localhost (MCA v1.0, API v1.0, Component v1.0) MCA ras: slurm (MCA v1.0, API v1.0, Component v1.0) MCA rds: hostfile (MCA v1.0, API v1.0, Component v1.0) MCA rds: resfile (MCA v1.0, API v1.0, Component v1.0) MCA rmaps: round_robin (MCA v1.0, API v1.0, Component v1.0) MCA rmgr: proxy (MCA v1.0, API v1.0, Component v1.0) MCA rmgr: urm (MCA v1.0, API v1.0, Component v1.0) MCA rml: oob (MCA v1.0, API v1.0, Component v1.0) MCA pls: fork (MCA v1.0, API v1.0, Component v1.0) MCA pls: proxy (MCA v1.0, API v1.0, Component v1.0) MCA pls: rsh (MCA v1.0, API v1.0, Component v1.0) MCA pls: slurm (MCA v1.0, API v1.0, Component v1.0) MCA sds: env (MCA v1.0, API v1.0, Component v1.0) MCA sds: pipe (MCA v1.0, API v1.0, Component v1.0) MCA sds: seed (MCA v1.0, API v1.0, Component v1.0) MCA sds: singleton (MCA v1.0, API v1.0, Component v1.0) MCA sds: slurm (MCA v1.0, API v1.0, Component v1.0) [clement@kfc TestMPI]$ Jeff Squyres wrote: I'm sorry -- I wasn't entirely clear: 1. Are you using a 1.0 nightly tarball or a 1.1 nightly tarball? We have made a bunch of fixes to the 1.1 tree (i.e., the Subversion trunk), but have not fully vetted them yet, so they have not yet been taken to the 1.0 release branch yet. If you have not done so already, could you try a tarball from the trunk? http://www.open-mpi.org/nightly/trunk/ 2. The error you are seeing looks like a proxy process is failing to start because it seg faults. Are you getting corefiles? If so, can you send the backtrace? The corefile should be from the $prefix/bin/orted executable. 3. Failing that, can you run with the "-d" switch? It should give a bunch of debugging output that might be helpful. "mpirun -d -np 2 ./test", for example. 4. Also please send the output of the "ompi_info" command. On Nov 10, 2005, at 9:05 AM, Clement Chu wrote: I have tried the latest version (rc5 8053), but the error is still here. Jeff Squyres wrote: We've actually made quite a few bug fixes since RC4 (RC5 is not available yet). Would you mind trying with a nightly snapshot tarball? (there were some SVN commits last night after the nightly snapshot was made; I've just initiated another snapshot build -- r8085 should be on the web site within an hour or so) On Nov 10, 2005, at 4:38 AM, Clement Chu wrote: Hi, I got an error when tried the mpirun on mpi program. The following is the error message: [clement@kfc TestMPI]$ mpicc -g -o test main.c [clement@kfc TestMPI]$ mpirun -np 2 test mpirun noticed that job rank 1 with PID 0 on node "localhost" exited on signal 11. [kfc:28466] ERROR: A daemon on node localhost failed to start as expected. [kfc:28466] ERROR: There may be more information available from [kfc:28466] ERROR: the remote shell (see above). [kfc:28466] The daemon received a signal 11. 1 additional process aborted (not shown) [clement@kfc TestMPI]$ I am using openmpi-1.0rc4 and running on Linux Redhat Fedora Core 4. The kernal is 2.6.12-1.1456_FC4. My building procedure is as below: 1. ./configure --prefix=/home/clement/openmpi --with-devel-headers 2. make all install 3. login root. add openmpi's path and lib in /etc/bashrc 4. see the $PATH and $LD_LIBRARY_PATH as below [clement@kfc TestMPI]$ echo $PATH /usr/java/jdk1.5.0_05/bin:/home/clement/openmpi/bin:/usr/java/ jdk1.5.0_05/bin:/home/clement/mpich-1.2.7/bin:/usr/kerberos/bin:/usr/ local/bin:/usr/bin:/bin:/usr/X11R6/bin:/home/clement/bin [clement@kfc TestMPI]$ echo $LD_LIBRARY_PATH /home/clement/openmpi/lib [clement@kfc TestMPI]$ 5. go to mpi program's directory 6. mpicc -g -o test main.c 7. mpirun -np 2 test Any idea of this problem. Many thanks. -- Clement Kam Man Chu Research Assistant
Re: [O-MPI users] Error on mpirun in Redhat Fedora Core 4
ng symbols from /home/clement/openmpi/lib/openmpi/mca_pls_slurm.so...done. Loaded symbols for /home/clement/openmpi/lib/openmpi/mca_pls_slurm.so Reading symbols from /home/clement/openmpi/lib/openmpi/mca_iof_svc.so...done. Loaded symbols for /home/clement/openmpi/lib/openmpi/mca_iof_svc.so #0 0x00e2a075 in orte_pls_rsh_launch () from /home/clement/openmpi/lib/openmpi/mca_pls_rsh.so (gdb) where #0 0x00e2a075 in orte_pls_rsh_launch () from /home/clement/openmpi/lib/openmpi/mca_pls_rsh.so #1 0x0042b656 in orte_rmgr_urm_spawn () from /home/clement/openmpi/lib/openmpi/mca_rmgr_urm.so #2 0x0804a10c in orterun (argc=4, argv=0xbf983d54) at orterun.c:373 #3 0x08049b4e in main (argc=4, argv=0xbf983d54) at main.c:13 (gdb) Jeff Squyres wrote: I'm sorry -- I wasn't entirely clear: 1. Are you using a 1.0 nightly tarball or a 1.1 nightly tarball? We have made a bunch of fixes to the 1.1 tree (i.e., the Subversion trunk), but have not fully vetted them yet, so they have not yet been taken to the 1.0 release branch yet. If you have not done so already, could you try a tarball from the trunk? http://www.open-mpi.org/nightly/trunk/ 2. The error you are seeing looks like a proxy process is failing to start because it seg faults. Are you getting corefiles? If so, can you send the backtrace? The corefile should be from the $prefix/bin/orted executable. 3. Failing that, can you run with the "-d" switch? It should give a bunch of debugging output that might be helpful. "mpirun -d -np 2 ./test", for example. 4. Also please send the output of the "ompi_info" command. On Nov 10, 2005, at 9:05 AM, Clement Chu wrote: I have tried the latest version (rc5 8053), but the error is still here. Jeff Squyres wrote: We've actually made quite a few bug fixes since RC4 (RC5 is not available yet). Would you mind trying with a nightly snapshot tarball? (there were some SVN commits last night after the nightly snapshot was made; I've just initiated another snapshot build -- r8085 should be on the web site within an hour or so) On Nov 10, 2005, at 4:38 AM, Clement Chu wrote: Hi, I got an error when tried the mpirun on mpi program. The following is the error message: [clement@kfc TestMPI]$ mpicc -g -o test main.c [clement@kfc TestMPI]$ mpirun -np 2 test mpirun noticed that job rank 1 with PID 0 on node "localhost" exited on signal 11. [kfc:28466] ERROR: A daemon on node localhost failed to start as expected. [kfc:28466] ERROR: There may be more information available from [kfc:28466] ERROR: the remote shell (see above). [kfc:28466] The daemon received a signal 11. 1 additional process aborted (not shown) [clement@kfc TestMPI]$ I am using openmpi-1.0rc4 and running on Linux Redhat Fedora Core 4. The kernal is 2.6.12-1.1456_FC4. My building procedure is as below: 1. ./configure --prefix=/home/clement/openmpi --with-devel-headers 2. make all install 3. login root. add openmpi's path and lib in /etc/bashrc 4. see the $PATH and $LD_LIBRARY_PATH as below [clement@kfc TestMPI]$ echo $PATH /usr/java/jdk1.5.0_05/bin:/home/clement/openmpi/bin:/usr/java/ jdk1.5.0_05/bin:/home/clement/mpich-1.2.7/bin:/usr/kerberos/bin:/usr/ local/bin:/usr/bin:/bin:/usr/X11R6/bin:/home/clement/bin [clement@kfc TestMPI]$ echo $LD_LIBRARY_PATH /home/clement/openmpi/lib [clement@kfc TestMPI]$ 5. go to mpi program's directory 6. mpicc -g -o test main.c 7. mpirun -np 2 test Any idea of this problem. Many thanks. -- Clement Kam Man Chu Research Assistant School of Computer Science & Software Engineering Monash University, Caulfield Campus Ph: 61 3 9903 1964
Re: [O-MPI users] Error on mpirun in Redhat Fedora Core 4
Thanks for your help. kfc is machine name and clement is the username of this machine. Do you think it is the problem? Then I tried to remove kfc machine and run again. This time I can run mpi program and there is no error message output, but it is no program output too. I think it is something wrong there. [clement@localhost TestMPI]$ mpirun -d -np 2 test [dhcppc0:02954] [0,0,0] setting up session dir with [dhcppc0:02954] universe default-universe [dhcppc0:02954] user clement [dhcppc0:02954] host dhcppc0 [dhcppc0:02954] jobid 0 [dhcppc0:02954] procid 0 [dhcppc0:02954] procdir: /tmp/openmpi-sessions-clement@dhcppc0_0/default-universe/0/0 [dhcppc0:02954] jobdir: /tmp/openmpi-sessions-clement@dhcppc0_0/default-universe/0 [dhcppc0:02954] unidir: /tmp/openmpi-sessions-clement@dhcppc0_0/default-universe[dhcppc0:02954] top: openmpi-sessions-clement@dhcppc0_0 [dhcppc0:02954] tmp: /tmp [dhcppc0:02954] [0,0,0] contact_file /tmp/openmpi-sessions-clement@dhcppc0_0/default-universe/universe-setup.txt [dhcppc0:02954] [0,0,0] wrote setup file [dhcppc0:02954] spawn: in job_state_callback(jobid = 1, state = 0x1) [dhcppc0:02954] pls:rsh: local csh: 0, local bash: 1 [dhcppc0:02954] pls:rsh: assuming same remote shell as local shell [dhcppc0:02954] pls:rsh: remote csh: 0, remote bash: 1 [dhcppc0:02954] pls:rsh: final template argv: [dhcppc0:02954] pls:rsh: ssh orted --debug --bootproxy 1 --name --num_procs 2 --vpid_start 0 --nodename --universe clement@dhcppc0:default-universe --nsreplica "0.0.0;tcp://192.168.11.100:32780" --gprreplica "0.0.0;tcp://192.168.11.100:32780" --mpi-call-yield 0 [dhcppc0:02954] pls:rsh: launching on node localhost [dhcppc0:02954] pls:rsh: oversubscribed -- setting mpi_yield_when_idle to 1 (1 2) [dhcppc0:02954] pls:rsh: localhost is a LOCAL node [dhcppc0:02954] pls:rsh: executing: orted --debug --bootproxy 1 --name 0.0.1 --num_procs 2 --vpid_start 0 --nodename localhost --universe clement@dhcppc0:default-universe --nsreplica "0.0.0;tcp://192.168.11.100:32780" --gprreplica "0.0.0;tcp://192.168.11.100:32780" --mpi-call-yield 1 [dhcppc0:02955] [0,0,1] setting up session dir with [dhcppc0:02955] universe default-universe [dhcppc0:02955] user clement [dhcppc0:02955] host localhost [dhcppc0:02955] jobid 0 [dhcppc0:02955] procid 1 [dhcppc0:02955] procdir: /tmp/openmpi-sessions-clement@localhost_0/default-universe/0/1 [dhcppc0:02955] jobdir: /tmp/openmpi-sessions-clement@localhost_0/default-universe/0 [dhcppc0:02955] unidir: /tmp/openmpi-sessions-clement@localhost_0/default-universe [dhcppc0:02955] top: openmpi-sessions-clement@localhost_0 [dhcppc0:02955] tmp: /tmp [dhcppc0:02955] sess_dir_finalize: proc session dir not empty - leaving [dhcppc0:02955] sess_dir_finalize: proc session dir not empty - leaving [dhcppc0:02955] orted: job_state_callback(jobid = 1, state = ORTE_PROC_STATE_TERMINATED) [dhcppc0:02955] sess_dir_finalize: found proc session dir empty - deleting [dhcppc0:02955] sess_dir_finalize: found job session dir empty - deleting [dhcppc0:02955] sess_dir_finalize: found univ session dir empty - deleting [dhcppc0:02955] sess_dir_finalize: found top session dir empty - deleting [dhcppc0:02954] spawn: in job_state_callback(jobid = 1, state = 0x9) [dhcppc0:02954] sess_dir_finalize: found proc session dir empty - deleting [dhcppc0:02954] sess_dir_finalize: found job session dir empty - deleting [dhcppc0:02954] sess_dir_finalize: found univ session dir empty - deleting [dhcppc0:02954] sess_dir_finalize: found top session dir empty - deleting Clement Jeff Squyres wrote: One minor thing that I notice in your ompi_info output -- your build and run machines are different (kfc vs. clement). Are these both FC4 machines, or are they different OS's/distros? On Nov 10, 2005, at 10:01 AM, Clement Chu wrote: [clement@kfc TestMPI]$ mpirun -d -np 2 test [kfc:29199] procdir: (null) [kfc:29199] jobdir: (null) [kfc:29199] unidir: /tmp/openmpi-sessions-clement@kfc_0/default-universe [kfc:29199] top: openmpi-sessions-clement@kfc_0 [kfc:29199] tmp: /tmp [kfc:29199] [0,0,0] setting up session dir with [kfc:29199] tmpdir /tmp [kfc:29199] universe default-universe-29199 [kfc:29199] user clement [kfc:29199] host kfc [kfc:29199] jobid 0 [kfc:29199] procid 0 [kfc:29199] procdir: /tmp/openmpi-sessions-clement@kfc_0/default-universe-29199/0/0 [kfc:29199] jobdir: /tmp/openmpi-sessions-clement@kfc_0/default-universe-29199/0 [kfc:29199] unidir: /tmp/openmpi-sessions-clement@kfc_0/default-universe-29199 [kfc:29199] top: openmpi-sessions-clement@kfc_0 [kfc:29199] tmp: /tmp [kfc:29199] [0,0,0] contact_file /tmp/openmpi-sessions-clement@kfc_0/default-universe-29199/universe- setup.txt [kfc:29199] [0,0,0] wrote setup file [kfc:29199] pls:rsh: local csh: 0, local bash: 1 [kfc:29199] pls:rsh: assuming same remote shell as l
Re: [O-MPI users] Error on mpirun in Redhat Fedora Core 4
bols from /home/clement/openmpi/lib/openmpi/mca_rmaps_round_robin.so...done. Loaded symbols for /home/clement/openmpi//lib/openmpi/mca_rmaps_round_robin.so Reading symbols from /home/clement/openmpi/lib/openmpi/mca_pls_fork.so...done. Loaded symbols for /home/clement/openmpi//lib/openmpi/mca_pls_fork.so Reading symbols from /home/clement/openmpi/lib/openmpi/mca_pls_proxy.so...done. Loaded symbols for /home/clement/openmpi//lib/openmpi/mca_pls_proxy.so Reading symbols from /home/clement/openmpi/lib/openmpi/mca_pls_rsh.so...done. Loaded symbols for /home/clement/openmpi//lib/openmpi/mca_pls_rsh.so Reading symbols from /home/clement/openmpi/lib/openmpi/mca_pls_slurm.so...done. Loaded symbols for /home/clement/openmpi//lib/openmpi/mca_pls_slurm.so Reading symbols from /home/clement/openmpi/lib/openmpi/mca_iof_proxy.so...done. Loaded symbols for /home/clement/openmpi//lib/openmpi/mca_iof_proxy.so Reading symbols from /home/clement/openmpi/lib/openmpi/mca_allocator_basic.so...done. Loaded symbols for /home/clement/openmpi//lib/openmpi/mca_allocator_basic.so Reading symbols from /home/clement/openmpi/lib/openmpi/mca_allocator_bucket.so...done. Loaded symbols for /home/clement/openmpi//lib/openmpi/mca_allocator_bucket.so Reading symbols from /home/clement/openmpi/lib/openmpi/mca_rcache_rb.so...done. Loaded symbols for /home/clement/openmpi//lib/openmpi/mca_rcache_rb.so Reading symbols from /home/clement/openmpi/lib/openmpi/mca_mpool_sm.so...done. Loaded symbols for /home/clement/openmpi//lib/openmpi/mca_mpool_sm.so Reading symbols from /home/clement/openmpi/lib/libmca_common_sm.so.0...done. Loaded symbols for /home/clement/openmpi//lib/libmca_common_sm.so.0 Reading symbols from /home/clement/openmpi/lib/openmpi/mca_pml_ob1.so...done. Loaded symbols for /home/clement/openmpi//lib/openmpi/mca_pml_ob1.so Reading symbols from /home/clement/openmpi/lib/openmpi/mca_bml_r2.so...done. Loaded symbols for /home/clement/openmpi//lib/openmpi/mca_bml_r2.so Reading symbols from /home/clement/openmpi/lib/openmpi/mca_btl_self.so...done. Loaded symbols for /home/clement/openmpi//lib/openmpi/mca_btl_self.so Reading symbols from /home/clement/openmpi/lib/openmpi/mca_btl_sm.so...done. Loaded symbols for /home/clement/openmpi//lib/openmpi/mca_btl_sm.so Reading symbols from /home/clement/openmpi/lib/openmpi/mca_btl_tcp.so...done. Loaded symbols for /home/clement/openmpi//lib/openmpi/mca_btl_tcp.so Reading symbols from /home/clement/openmpi/lib/openmpi/mca_ptl_self.so...done. Loaded symbols for /home/clement/openmpi//lib/openmpi/mca_ptl_self.so Reading symbols from /home/clement/openmpi/lib/openmpi/mca_ptl_sm.so...done. Loaded symbols for /home/clement/openmpi//lib/openmpi/mca_ptl_sm.so Reading symbols from /home/clement/openmpi/lib/openmpi/mca_ptl_tcp.so...done. Loaded symbols for /home/clement/openmpi//lib/openmpi/mca_ptl_tcp.so Reading symbols from /home/clement/openmpi/lib/openmpi/mca_coll_basic.so...done.Loaded symbols for /home/clement/openmpi//lib/openmpi/mca_coll_basic.so Reading symbols from /home/clement/openmpi/lib/openmpi/mca_coll_hierarch.so...done. Loaded symbols for /home/clement/openmpi//lib/openmpi/mca_coll_hierarch.so Reading symbols from /home/clement/openmpi/lib/openmpi/mca_coll_self.so...done. Loaded symbols for /home/clement/openmpi//lib/openmpi/mca_coll_self.so Reading symbols from /home/clement/openmpi/lib/openmpi/mca_coll_sm.so...done. Loaded symbols for /home/clement/openmpi//lib/openmpi/mca_coll_sm.so #0 0x00324a60 in mca_btl_sm_add_procs_same_base_addr (btl=0x328200, nprocs=2, procs=0x95443a8, peers=0x95443d8, reachability=0xbf993994) at btl_sm.c:412 412 mca_btl_sm_component.sm_ctl_header->segment_header. (gdb) where #0 0x00324a60 in mca_btl_sm_add_procs_same_base_addr (btl=0x328200, nprocs=2, procs=0x95443a8, peers=0x95443d8, reachability=0xbf993994) at btl_sm.c:412 #1 0x00365fad in mca_bml_r2_add_procs (nprocs=2, procs=0x95443a8, bml_endpoints=0x9544388, reachable=0xbf993994) at bml_r2.c:220 #2 0x007ba346 in mca_pml_ob1_add_procs (procs=0x9544378, nprocs=2) at pml_ob1.c:131 #3 0x00d3df0b in ompi_mpi_init (argc=1, argv=0xbf993c74, requested=0, provided=0xbf993a44) at runtime/ompi_mpi_init.c:396 #4 0x00d59ab8 in PMPI_Init (argc=0xbf993bf0, argv=0xbf993bf4) at pinit.c:71 #5 0x08048904 in main (argc=1, argv=0xbf993c74) at cpi.c:20 (gdb) I attached the mpi program. I do hope you can help me. Many thanks. Clement Jeff Squyres wrote: One minor thing that I notice in your ompi_info output -- your build and run machines are different (kfc vs. clement). Are these both FC4 machines, or are they different OS's/distros? On Nov 10, 2005, at 10:01 AM, Clement Chu wrote: [clement@kfc TestMPI]$ mpirun -d -np 2 test [kfc:29199] procdir: (null) [kfc:29199] jobdir: (null) [kfc:29199] unidir: /tmp/openmpi-sessions-clement@kfc_0/default-universe [kfc:29199] top: openmpi-sessions-clement@kfc_0 [kfc:29199] tmp: /tmp [k
[O-MPI users] Anyone installed openmpi in Redhat 4?
Hi, Did anyone installed openmpi in Redhat Core 4? I got a major problem to run mpi program with openmpi in RH 4. I would like to share your experience. Regards, Clement -- Clement Kam Man Chu Research Assistant School of Computer Science & Software Engineering Monash University, Caulfield Campus Ph: 61 3 9903 1964
Re: [O-MPI users] Error on mpirun in Redhat Fedora Core 4
Thanks Jeff. The problem is solved on the latest version (8172). Clement Jeff Squyres wrote: Clement -- Sorry for the delay in replying. We're running around crazy here at SC, which pretty much keeps us away from e-mail except early in the morning and late at night. We fixed a bunch of things in the sm btl as of r8136 (someone reported similar issues as you, and we took the exchange off-list to fix). The problems could definitely affect correctness and cause segv's similar to what you were seeing (see http://www.open-mpi.org/community/lists/users/2005/11/0326.php for a little more info). I notice that you're running 8113 here -- could you try the latest nightly snapshot or rc and see if the same problems occur? Thanks for your patience! On Nov 14, 2005, at 4:51 AM, Clement Chu wrote: Hi Jeff, I tried the rc6 and trunk nightly 8150. I got the same problem. I copied the message from terminal as below. [clement@localhost testmpi]$ ompi_info Open MPI: 1.1a1r8113 Open MPI SVN revision: r8113 Open RTE: 1.1a1r8113 Open RTE SVN revision: r8113 OPAL: 1.1a1r8113 OPAL SVN revision: r8113 Prefix: /home/clement/openmpi/ Configured architecture: i686-pc-linux-gnu Configured by: clement Configured on: Mon Nov 14 10:12:12 EST 2005 Configure host: localhost Built by: clement Built on: Mon Nov 14 10:28:21 EST 2005 Built host: localhost C bindings: yes C++ bindings: yes Fortran77 bindings: yes (all) Fortran90 bindings: yes C compiler: gcc C compiler absolute: /usr/bin/gcc C++ compiler: g++ C++ compiler absolute: /usr/bin/g++ Fortran77 compiler: gfortran Fortran77 compiler abs: /usr/bin/gfortran Fortran90 compiler: gfortran Fortran90 compiler abs: /usr/bin/gfortran C profiling: yes C++ profiling: yes Fortran77 profiling: yes Fortran90 profiling: yes C++ exceptions: no Thread support: posix (mpi: no, progress: no) Internal debug support: no MPI parameter check: runtime Memory profiling support: no Memory debugging support: no libltdl support: 1 MCA memory: malloc_hooks (MCA v1.0, API v1.0, Component v1.1) MCA paffinity: linux (MCA v1.0, API v1.0, Component v1.1) MCA maffinity: first_use (MCA v1.0, API v1.0, Component v1.1) MCA timer: linux (MCA v1.0, API v1.0, Component v1.1) MCA allocator: basic (MCA v1.0, API v1.0, Component v1.0) MCA allocator: bucket (MCA v1.0, API v1.0, Component v1.0) MCA coll: basic (MCA v1.0, API v1.0, Component v1.1) MCA coll: hierarch (MCA v1.0, API v1.0, Component v1.1) MCA coll: self (MCA v1.0, API v1.0, Component v1.1) MCA coll: sm (MCA v1.0, API v1.0, Component v1.1) MCA io: romio (MCA v1.0, API v1.0, Component v1.1) MCA mpool: sm (MCA v1.0, API v1.0, Component v1.1) MCA pml: ob1 (MCA v1.0, API v1.0, Component v1.1) MCA pml: teg (MCA v1.0, API v1.0, Component v1.1) MCA pml: uniq (MCA v1.0, API v1.0, Component v1.1) MCA ptl: self (MCA v1.0, API v1.0, Component v1.1) MCA ptl: sm (MCA v1.0, API v1.0, Component v1.1) MCA ptl: tcp (MCA v1.0, API v1.0, Component v1.1) MCA btl: self (MCA v1.0, API v1.0, Component v1.1) MCA btl: sm (MCA v1.0, API v1.0, Component v1.1) MCA btl: tcp (MCA v1.0, API v1.0, Component v1.0) MCA topo: unity (MCA v1.0, API v1.0, Component v1.1) MCA gpr: null (MCA v1.0, API v1.0, Component v1.1) MCA gpr: proxy (MCA v1.0, API v1.0, Component v1.1) MCA gpr: replica (MCA v1.0, API v1.0, Component v1.1) MCA iof: proxy (MCA v1.0, API v1.0, Component v1.1) MCA iof: svc (MCA v1.0, API v1.0, Component v1.1) MCA ns: proxy (MCA v1.0, API v1.0, Component v1.1) MCA ns: replica (MCA v1.0, API v1.0, Component v1.1) MCA oob: tcp (MCA v1.0, API v1.0, Component v1.0) MCA ras: dash_host (MCA v1.0, API v1.0, Component v1.1) MCA ras: hostfile (MCA v1.0, API v1.0, Component v1.1) MCA ras: localhost (MCA v1.0, API v1.0, Component v1.1) MCA ras: slurm (MCA v1.0, API v1.0, Component v1.1) MCA rds: hostfile (MCA v1.0, API v1.0, Component v1.1) MCA rds: resfile (MCA v1.0, API v1.0, Component v1.1) MCA rmaps: round_robin (MCA v1.0, API v1.0, Component v1.1) MCA rmgr: proxy (MCA v1.0, API v1.0, Component v1.1) MCA rmgr: urm (MCA v1.0, API v1.0, Component v1.1) MCA rml: oob (MCA v1.0, API v1.0, Component v1.1) MCA pls: fork (MCA v1.0, API
