[OMPI users] error configuring OpenMPI 1.6.4 with gcc 4.7.2
I have exactly the same problem as reported by Paul Hutton and David O Gunter (2012-12-06) tail of configure output checking Fortran 90 kind of MPI_INTEGER_KIND (selected_int_kind(9))... configure: error: Could not determine kind of selected_int_kind(MPI_INTEGER_KIND) selection from config.log configure:53602: gfortran -o conftest conftestf.f90 configure:53609: $? = 0 configure:53649: ./conftest ./conftest: /usr/lib64/libgfortran.so.3: version `GFORTRAN_1.4' not found (required by ./conftest) configure:53656: $? = 1 configure:53665: error: Could not determine kind of selected_int_kind(MPI_INTEGER_KIND) Unfortunately I don't understand how this was resolved. I checked and the /usr/local/gcc-4.7.2/lib64 directory is populated with shared objects (including libgfortran.so.3).. I used the following commands in a script: LD_LIBRARY_PATH=/usr/local/gcc-4.7.2/lib64:$LD_LIBRARY_PATH PATH=/usr/local/gcc-4.7.2/bin:$PATH ./configure --prefix=/usr/local/openmpi-1.6.4 \ --enable-static If it is useful I can attach config.log... Thanks, Alan
Re: [OMPI users] error configuring OpenMPI 1.6.4 with gcc 4.7.2
The problem was easily resolved by adding the missing export statements in the shell script which was calling configure.
[OMPI users] configure problem
I'm trying to build v 1.6.4 with a local install of gcc 4.7.2.
I am trying to use the following script
OWD=$PWD
GMPD=$OWD/gmp-4.3.2
MPFRD=$OWD/mpfr-2.4.2
MPCD=$OWD/mpc-0.8.1
PPLD=$OWD/ppl-0.11
CLOOG=$OWD/cloog-ppl-0.15.9
GCC=$OWD/gcc-4.7.2-rhel5
export
LD_LIBRARY_PATH=$GCC/lib64:$GMPD/lib:$MPFRD/lib:$MPCD/lib:$PPLD/lib:$CLOOG/lib:$LD_LIBRARY_PATH
export PATH=$GCC/bin:/usr/bin:/bin
export CFLAGS='-I/nm/programs/third-party/gcc-4.7.2-rhel5/include
-I/nm/programs/third-party/gcc-4.7.2-rhel5/include/c++
-I/nm/programs/third-party/gcc-4.7.2-rhel5/include/c++/4.7.2'
#mkdir tmp-install >& /dev/null
cdtmp-install
rm -rf openmpi-1.6.4-$1
cp ../downloads/openmpi-1.6.4.tar.gz .
tar -xvf openmpi-1.6.4.tar.gz
mv openmpi-1.6.4 openmpi-1.6.4-$1
cd openmpi-1.6.4-$1
./configure \
--prefix=$OWD/openmpi-1.6.4-$1 \
--enable-static
#make
#make install
cd $OWD
The gcc executable is tested in test.sh:
OWD=$PWD
GMPD=$OWD/gmp-4.3.2
MPFRD=$OWD/mpfr-2.4.2
MPCD=$OWD/mpc-0.8.1
PPLD=$OWD/ppl-0.11
CLOOG=$OWD/cloog-ppl-0.15.9
export
LD_LIBRARY_PATH=$GMPD/lib:$MPFRD/lib:$MPCD/lib:$PPLD/lib:$CLOOG/lib:$OWD/gcc-4.7.2-rhel5/lib64
export PATH=$OWD/gcc-4.7.2-rhel5/bin:/bin:/usr/bin
which gcc
which g++
rm -r test >& /dev/null
c++ -o test test.c
./test
the test code test.c
include
int
main(const int argc, const char* argv[])
{
bool bar;
bool foo = true;
bar = foo;
printf("Hello World!\n");
printf("sizeof bool %i\n", sizeof(bool));
return 0;
}
The output test.out>
/nm/programs/third_party/gcc-4.7.2-rhel5/bin/gcc
/nm/programs/third_party/gcc-4.7.2-rhel5/bin/g++
Hello World!
sizeof bool 1
The configure steps with message that bool size is zero (at least I think
that's why it stops). The config.log.gz is attached.
The compiling system is RHEL5.
Thanks,
Alan
config.log.bz2
Description: BZip2 compressed data
configure_openmpi-1.6.4-xxx.sh
Description: Bourne shell script
#include
int
main(const int argc, const char* argv[])
{
bool bar;
bool foo = true;
bar = foo;
printf("Hello World!\n");
printf("sizeof bool %i\n", sizeof(bool));
return 0;
}
test.out
Description: Binary data
test.sh
Description: Bourne shell script
[OMPI users] problems building openmpi v 1.6.4 using a local build of gcc 4.7.2 on rhel6
I'm trying to build openmpi v.1.6.4 using a local build of gcc 4.7.2 on
rhel6.
The configure and build scripts are attached. The config.log and
build.output are attached.
The last few lines of the build output is:
make[3]: Entering directory
`/nm/programs/third_party/tmp-install/openmpi-1.6.4-blgwap02/ompi/mpi/f77'
make[3]: Nothing to be done for `all-am'.
make[3]: Leaving directory
`/nm/programs/third_party/tmp-install/openmpi-1.6.4-blgwap02/ompi/mpi/f77'
make[2]: Leaving directory
`/nm/programs/third_party/tmp-install/openmpi-1.6.4-blgwap02/ompi/mpi/f77'
Making all in mpi/f90
make[2]: Entering directory
`/nm/programs/third_party/tmp-install/openmpi-1.6.4-blgwap02/ompi/mpi/f90'
make all-recursive
make[3]: Entering directory
`/nm/programs/third_party/tmp-install/openmpi-1.6.4-blgwap02/ompi/mpi/f90'
Making all in scripts
make[4]: Entering directory
`/nm/programs/third_party/tmp-install/openmpi-1.6.4-blgwap02/ompi/mpi/f90/scripts'
make[4]: Nothing to be done for `all'.
make[4]: Leaving directory
`/nm/programs/third_party/tmp-install/openmpi-1.6.4-blgwap02/ompi/mpi/f90/scripts'
make[4]: Entering directory
`/nm/programs/third_party/tmp-install/openmpi-1.6.4-blgwap02/ompi/mpi/f90'
FC mpi.lo
In file mpi-f90-interfaces.h:1586
Included at mpi.f90:37
real*16, intent(in) :: x
1
Error: Old-style type declaration REAL*16 not supported at (1)
In file mpi-f90-interfaces.h:1607
Included at mpi.f90:37
complex*32, intent(in) :: x
1
Error: Old-style type declaration COMPLEX*32 not supported at (1)
In file mpi-f90-interfaces.h:1670
Included at mpi.f90:37
real*16, dimension(*), intent(in) :: x
1
Error: Old-style type declaration REAL*16 not supported at (1)
In file mpi-f90-interfaces.h:1691
Included at mpi.f90:37
complex*32, dimension(*), intent(in) :: x
1
Error: Old-style type declaration COMPLEX*32 not supported at (1)
In file mpi-f90-interfaces.h:1754
Included at mpi.f90:37
real*16, dimension(1,*), intent(in) :: x
1
Error: Old-style type declaration REAL*16 not supported at (1)
In file mpi-f90-interfaces.h:1775
Included at mpi.f90:37
complex*32, dimension(1,*), intent(in) :: x
1
Error: Old-style type declaration COMPLEX*32 not supported at (1)
In file mpi-f90-interfaces.h:1838
Included at mpi.f90:37
real*16, dimension(1,1,*), intent(in) :: x
1
Error: Old-style type declaration REAL*16 not supported at (1)
In file mpi-f90-interfaces.h:1859
Included at mpi.f90:37
complex*32, dimension(1,1,*), intent(in) :: x
1
Error: Old-style type declaration COMPLEX*32 not supported at (1)
In file mpi-f90-interfaces.h:1922
Included at mpi.f90:37
real*16, dimension(1,1,1,*), intent(in) :: x
1
Error: Old-style type declaration REAL*16 not supported at (1)
In file mpi-f90-interfaces.h:1943
Included at mpi.f90:37
complex*32, dimension(1,1,1,*), intent(in) :: x
1
Error: Old-style type declaration COMPLEX*32 not supported at (1)
In file mpi-f90-interfaces.h:1946
Included at mpi.f90:37
end subroutine MPI_Sizeof4DC32
1
Error: Ambiguous interfaces 'mpi_sizeof4dc32' and 'mpi_sizeof4dr16' in
generic interface 'mpi_sizeof' at (1)
make[4]: *** [mpi.lo] Error 1
make[4]: Leaving directory
`/nm/programs/third_party/tmp-install/openmpi-1.6.4-blgwap02/ompi/mpi/f90'
make[3]: *** [all-recursive] Error 1
make[3]: Leaving directory
`/nm/programs/third_party/tmp-install/openmpi-1.6.4-blgwap02/ompi/mpi/f90'
make[2]: *** [all] Error 2
make[2]: Leaving directory
`/nm/programs/third_party/tmp-install/openmpi-1.6.4-blgwap02/ompi/mpi/f90'
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory
`/nm/programs/third_party/tmp-install/openmpi-1.6.4-blgwap02/ompi'
make: *** [all-recursive] Error 1
What I am doing wrong?
Thanks,
Alan
build.out.bz2
Description: BZip2 compressed data
config.log.bz2
Description: BZip2 compressed data
configure_openmpi-1.6.4-xxx.sh
Description: Bourne shell script
make_openmpi-1.6.4-xxx.sh
Description: Bourne shell script
tail.out
Description: Binary data
#include
int
main(const int argc, const char* argv[])
{
bool bar;
bool foo = true;
bar = foo;
printf("Hello World!\n");
printf("sizeof bool %i\n", sizeof(bool));
return 0;
}
test.out
Description: Binary data
test.sh
Description: Bourne shell script
[OMPI users] minor change request
To quiet VS compile time warnings can the following (very) minor change be made:
c:\program files
(x86)\openmpi_v1.6-x64\include\openmpi/ompi/mpi/cxx/op_inln.h(148):
warning C4800: 'int' : forcing value to bool 'true' or 'false'
(performance warning)
from:
inline bool
MPI::Op::Is_commutative(void) const
{
int commute;
(void)MPI_Op_commutative(mpi_op, &commute);
return (bool) commute;
}
to:
inline bool
MPI::Op::Is_commutative(void) const
{
int commute;
(void)MPI_Op_commutative(mpi_op, &commute);
return (commute != 0);
}
Thanks,
Alan
