[OMPI users] Segmentation fault using openmpi-master-201901030305-ee26ed9

2019-01-04 Thread Siegmar Gross

Hi,

I've installed (tried to install) openmpi-master-201901030305-ee26ed9 on
my "SUSE Linux Enterprise Server 12.3 (x86_64)" with gcc-7.3.0, icc-19.0.1.144
pgcc-18.4-0, and Sun C 5.15 (Oracle Developer Studio 12.6). Unfortunately, I
still cannot build it with Sun C and I get a segmentation fault for one of
my small programs for the other compilers.

I get the following error for Sun C that I reported some time ago.
https://www.mail-archive.com/users@lists.open-mpi.org/msg32816.html


The program runs as expected if I only use my local machine "loki" and it
breaks if I add a remote machine (even if I only use the remote machine
without "loki").

loki hello_1 114 ompi_info | grep -e "Open MPI repo revision" -e"Configure 
command line"

  Open MPI repo revision: v2.x-dev-6601-gee26ed9
  Configure command line: '--prefix=/usr/local/openmpi-master_64_gcc' 
'--libdir=/usr/local/openmpi-master_64_gcc/lib64' 
'--with-jdk-bindir=/usr/local/jdk-11/bin' 
'--with-jdk-headers=/usr/local/jdk-11/include' 'JAVA_HOME=/usr/local/jdk-11' 
'LDFLAGS=-m64 -L/usr/local/cuda/lib64' 'CC=gcc' 'CXX=g++' 'FC=gfortran' 
'CFLAGS=-m64 -I/usr/local/cuda/include' 'CXXFLAGS=-m64 
-I/usr/local/cuda/include' 'FCFLAGS=-m64' 'CPP=cpp -I/usr/local/cuda/include' 
'CXXCPP=cpp -I/usr/local/cuda/include' '--enable-mpi-cxx' 
'--enable-cxx-exceptions' '--enable-mpi-java' '--with-cuda=/usr/local/cuda' 
'--with-valgrind=/usr/local/valgrind' '--with-hwloc=internal' '--without-verbs' 
'--with-wrapper-cflags=-std=c11 -m64' '--with-wrapper-cxxflags=-m64' 
'--with-wrapper-fcflags=-m64' '--enable-debug'



loki hello_1 115 mpiexec -np 4 --host loki:2,nfs2:2 hello_1_mpi
Process 0 of 4 running on loki
Process 1 of 4 running on loki
Process 2 of 4 running on nfs2
Process 3 of 4 running on nfs2

Now 3 slave tasks are sending greetings.

Greetings from task 1:
  message type:3
  msg length:  132 characters
... (complete output of my program)

[nfs2:01336] *** Process received signal ***
[nfs2:01336] Signal: Segmentation fault (11)
[nfs2:01336] Signal code: Address not mapped (1)
[nfs2:01336] Failing at address: 0x7feea4849268
[nfs2:01336] [ 0] /lib64/libpthread.so.0(+0x10c10)[0x7feeacbbec10]
[nfs2:01336] [ 1] 
/usr/local/openmpi-master_64_gcc/lib64/libopen-pal.so.0(+0x7cd34)[0x7feeadd94d34]
[nfs2:01336] [ 2] 
/usr/local/openmpi-master_64_gcc/lib64/libopen-pal.so.0(+0x78673)[0x7feeadd90673]
[nfs2:01336] [ 3] 
/usr/local/openmpi-master_64_gcc/lib64/libopen-pal.so.0(+0x7ac2c)[0x7feeadd92c2c]
[nfs2:01336] [ 4] 
/usr/local/openmpi-master_64_gcc/lib64/libopen-pal.so.0(opal_finalize_cleanup_domain+0x3e)[0x7feeadd56507]
[nfs2:01336] [ 5] 
/usr/local/openmpi-master_64_gcc/lib64/libopen-pal.so.0(opal_finalize_util+0x56)[0x7feeadd56667]
[nfs2:01336] [ 6] 
/usr/local/openmpi-master_64_gcc/lib64/libopen-pal.so.0(opal_finalize+0xd3)[0x7feeadd567de]
[nfs2:01336] [ 7] 
/usr/local/openmpi-master_64_gcc/lib64/libopen-rte.so.0(orte_finalize+0x1ba)[0x7feeae09d7ea]
[nfs2:01336] [ 8] 
/usr/local/openmpi-master_64_gcc/lib64/libopen-rte.so.0(orte_daemon+0x3ddd)[0x7feeae0cf55d]

[nfs2:01336] [ 9] orted[0x40086d]
[nfs2:01336] [10] /lib64/libc.so.6(__libc_start_main+0xf5)[0x7feeac829725]
[nfs2:01336] [11] orted[0x400739]
[nfs2:01336] *** End of error message ***
Segmentation fault (core dumped)
loki hello_1 116


I would be grateful, if somebody can fix the problem. Do you need anything
else? Thank you very much for any help in advance.


Kind regards

Siegmar
/* An MPI-version of the "hello world" program, which delivers some
 * information about its machine and operating system.
 *
 *
 * Compiling:
 *   mpicc -o   -lm
 *
 * Running:
 *   mpiexec -np  
 *
 *
 * File: hello_1_mpi.c		   	Author: S. Gross
 * Date: 04.08.2017
 *
 */

#include 
#include 
#include 
#include 
#include 
#include "mpi.h"

#define	BUF_SIZE	255		/* message buffer size		*/
#define	MAX_TASKS	12		/* max. number of tasks		*/
#define	SENDTAG		1		/* send message command		*/
#define	EXITTAG		2		/* termination command		*/
#define	MSGTAG		3		/* normal message token		*/

#define ENTASKS		-1		/* error: too many tasks	*/

static void master (void);
static void slave (void);

int main (int argc, char *argv[])
{
  int  mytid,/* my task id			*/
   ntasks,/* number of parallel tasks	*/
   namelen;/* length of processor name	*/
  char processor_name[MPI_MAX_PROCESSOR_NAME];

  MPI_Init (&argc, &argv);
  MPI_Comm_rank (MPI_COMM_WORLD, &mytid);
  MPI_Comm_size (MPI_COMM_WORLD, &ntasks);
  MPI_Get_processor_name (processor_name, &namelen);
  /* With the next statement every process executing this code will
   * print one line on the display. It may happen that the lines will
   * get mixed up because the display is a critical section. In general
   * only one process (mostly the process with rank 0) will print on
   * the display and all other processes will send their messages to
   * this process. Nevertheless for debugging purposes (or to
   * demonstrate that it is possible) it may be usefu

Re: [OMPI users] Segmentation fault using openmpi-master-201901030305-ee26ed9

2019-01-04 Thread Howard Pritchard
Hi Sigmar,

I observed this problem yesterday myself and should have a fix in to master
later today.


Howard


Am Fr., 4. Jan. 2019 um 05:30 Uhr schrieb Siegmar Gross <
siegmar.gr...@informatik.hs-fulda.de>:

> Hi,
>
> I've installed (tried to install) openmpi-master-201901030305-ee26ed9 on
> my "SUSE Linux Enterprise Server 12.3 (x86_64)" with gcc-7.3.0,
> icc-19.0.1.144
> pgcc-18.4-0, and Sun C 5.15 (Oracle Developer Studio 12.6). Unfortunately,
> I
> still cannot build it with Sun C and I get a segmentation fault for one of
> my small programs for the other compilers.
>
> I get the following error for Sun C that I reported some time ago.
> https://www.mail-archive.com/users@lists.open-mpi.org/msg32816.html
>
>
> The program runs as expected if I only use my local machine "loki" and it
> breaks if I add a remote machine (even if I only use the remote machine
> without "loki").
>
> loki hello_1 114 ompi_info | grep -e "Open MPI repo revision" -e"Configure
> command line"
>Open MPI repo revision: v2.x-dev-6601-gee26ed9
>Configure command line: '--prefix=/usr/local/openmpi-master_64_gcc'
> '--libdir=/usr/local/openmpi-master_64_gcc/lib64'
> '--with-jdk-bindir=/usr/local/jdk-11/bin'
> '--with-jdk-headers=/usr/local/jdk-11/include'
> 'JAVA_HOME=/usr/local/jdk-11'
> 'LDFLAGS=-m64 -L/usr/local/cuda/lib64' 'CC=gcc' 'CXX=g++' 'FC=gfortran'
> 'CFLAGS=-m64 -I/usr/local/cuda/include' 'CXXFLAGS=-m64
> -I/usr/local/cuda/include' 'FCFLAGS=-m64' 'CPP=cpp
> -I/usr/local/cuda/include'
> 'CXXCPP=cpp -I/usr/local/cuda/include' '--enable-mpi-cxx'
> '--enable-cxx-exceptions' '--enable-mpi-java'
> '--with-cuda=/usr/local/cuda'
> '--with-valgrind=/usr/local/valgrind' '--with-hwloc=internal'
> '--without-verbs'
> '--with-wrapper-cflags=-std=c11 -m64' '--with-wrapper-cxxflags=-m64'
> '--with-wrapper-fcflags=-m64' '--enable-debug'
>
>
> loki hello_1 115 mpiexec -np 4 --host loki:2,nfs2:2 hello_1_mpi
> Process 0 of 4 running on loki
> Process 1 of 4 running on loki
> Process 2 of 4 running on nfs2
> Process 3 of 4 running on nfs2
>
> Now 3 slave tasks are sending greetings.
>
> Greetings from task 1:
>message type:3
>msg length:  132 characters
> ... (complete output of my program)
>
> [nfs2:01336] *** Process received signal ***
> [nfs2:01336] Signal: Segmentation fault (11)
> [nfs2:01336] Signal code: Address not mapped (1)
> [nfs2:01336] Failing at address: 0x7feea4849268
> [nfs2:01336] [ 0] /lib64/libpthread.so.0(+0x10c10)[0x7feeacbbec10]
> [nfs2:01336] [ 1]
>
> /usr/local/openmpi-master_64_gcc/lib64/libopen-pal.so.0(+0x7cd34)[0x7feeadd94d34]
> [nfs2:01336] [ 2]
>
> /usr/local/openmpi-master_64_gcc/lib64/libopen-pal.so.0(+0x78673)[0x7feeadd90673]
> [nfs2:01336] [ 3]
>
> /usr/local/openmpi-master_64_gcc/lib64/libopen-pal.so.0(+0x7ac2c)[0x7feeadd92c2c]
> [nfs2:01336] [ 4]
>
> /usr/local/openmpi-master_64_gcc/lib64/libopen-pal.so.0(opal_finalize_cleanup_domain+0x3e)[0x7feeadd56507]
> [nfs2:01336] [ 5]
>
> /usr/local/openmpi-master_64_gcc/lib64/libopen-pal.so.0(opal_finalize_util+0x56)[0x7feeadd56667]
> [nfs2:01336] [ 6]
>
> /usr/local/openmpi-master_64_gcc/lib64/libopen-pal.so.0(opal_finalize+0xd3)[0x7feeadd567de]
> [nfs2:01336] [ 7]
>
> /usr/local/openmpi-master_64_gcc/lib64/libopen-rte.so.0(orte_finalize+0x1ba)[0x7feeae09d7ea]
> [nfs2:01336] [ 8]
>
> /usr/local/openmpi-master_64_gcc/lib64/libopen-rte.so.0(orte_daemon+0x3ddd)[0x7feeae0cf55d]
> [nfs2:01336] [ 9] orted[0x40086d]
> [nfs2:01336] [10] /lib64/libc.so.6(__libc_start_main+0xf5)[0x7feeac829725]
> [nfs2:01336] [11] orted[0x400739]
> [nfs2:01336] *** End of error message ***
> Segmentation fault (core dumped)
> loki hello_1 116
>
>
> I would be grateful, if somebody can fix the problem. Do you need anything
> else? Thank you very much for any help in advance.
>
>
> Kind regards
>
> Siegmar
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