[OMPI users] MPI_T Control Variables

2014-07-11 Thread Gallardo, Esthela 
Hi,


I am new to the MPI_T interface, and was trying to run an applications 
developed by LLNL which queries and lists the values of the control variables 
available. The tool can be downloaded from the following site:

https://computation-rnd.llnl.gov/mpi_t/varList.php


I noticed that when I ran the tool, I would encounter the following error:

[c557-604:121075] Signal: Segmentation fault (11)
[c557-604:121075] Signal code: Invalid permissions (2)
[c557-604:121075] Failing at address: 0x2b54ce9d1418
[c557-604:121075] [ 0] /lib64/libpthread.so.0[0x397060f710]
[c557-604:121075] [ 1] 
/work/02282/esthela/MPI/install-openmpi-1.8.1/lib/libmpi.so.1(MPI_T_cvar_read+0xc6)[0x2b54cbe55bd6]
[c557-604:121075] [ 2] ./varlist(list_cvars+0xda7)[0x402e17]
[c557-604:121075] [ 3] ./varlist(main+0x347)[0x401e37]
[c557-604:121075] [ 4] /lib64/libc.so.6(__libc_start_main+0xfd)[0x396fe1ed1d]
[c557-604:121075] [ 5] ./varlist[0x401a29]
[c557-604:121075] *** End of error message ***

I went ahead and tried to write a code that follows the process in varlist to 
read the control variables, and encountered the same error when I called the 
following function:

err=MPI_T_cvar_read(handle,val);


Through a recommendation, I ran both my code and the tool using mvapich, and 
could not reproduce the error. I don't know if this is a bug or if I didn't 
configure my installation of OpenMPI correctly. Below is a script that I used 
to install OpenMPI:


set -e
rm -fr /work/02282/esthela/MPI/install-openmpi-1.8.1 && \
make clean && \
./configure --with-cma=yes 
--prefix=/work/02282/esthela/MPI/install-openmpi-1.8.1 \
CC=icc CXX=icpc FC=ifort --enable-shared CFLAGS="-O3 -ip -xHost" \
CXXFLAGS="-O3 -ip -xHost" --without-slurm --disable-vt --with-verbs=/opt/ofed \
--with-verbs-libdir=/opt/ofed/lib64 && \
make clean && \
make -j4 && \
make install?



Help in resolving this issue would be greatly appreciated.


Thank you!


Esthela Gallardo

Re: [OMPI users] MPI_T Control Variables

2014-07-11 Thread Nathan Hjelm 
Can you try with a 1.8.2 nightly tarball or the trunk? I fixed a couple
of bugs that varlist discovered (also found some in varlist).

-Nathan Hjelm
HPC-5, LANL

On Fri, Jul 11, 2014 at 04:42:01PM +, Gallardo, Esthela wrote:
>Hi,
> 
>I am new to the MPI_T interface, and was trying to run an applications
>developed by LLNL which queries and lists the values of the control
>variables available. The tool can be downloaded from the following site: 
> 
>https://computation-rnd.llnl.gov/mpi_t/varList.php
> 
>I noticed that when I ran the tool, I would encounter the following
>error: 
> 
>[c557-604:121075] Signal: Segmentation fault (11)
>[c557-604:121075] Signal code: Invalid permissions (2)
>[c557-604:121075] Failing at address: 0x2b54ce9d1418
>[c557-604:121075] [ 0] /lib64/libpthread.so.0[0x397060f710]
>[c557-604:121075] [ 1]
>
> /work/02282/esthela/MPI/install-openmpi-1.8.1/lib/libmpi.so.1(MPI_T_cvar_read+0xc6)[0x2b54cbe55bd6]
>[c557-604:121075] [ 2] ./varlist(list_cvars+0xda7)[0x402e17]
>[c557-604:121075] [ 3] ./varlist(main+0x347)[0x401e37]
>[c557-604:121075] [ 4]
>/lib64/libc.so.6(__libc_start_main+0xfd)[0x396fe1ed1d]
>[c557-604:121075] [ 5] ./varlist[0x401a29]
>[c557-604:121075] *** End of error message ***
>I went ahead and tried to write a code that follows the process in varlist
>to read the control variables, and encountered the same error when I
>called the following function: 
>err=MPI_T_cvar_read(handle,val);
> 
>Through a recommendation, I ran both my code and the tool using mvapich,
>and could not reproduce the error. I don't know if this is a bug or if I
>didn't configure my installation of OpenMPI correctly. Below is a script
>that I used to install OpenMPI:
> 
>set -e
>rm -fr /work/02282/esthela/MPI/install-openmpi-1.8.1 && \
>make clean && \
>./configure --with-cma=yes
>--prefix=/work/02282/esthela/MPI/install-openmpi-1.8.1 \
>CC=icc CXX=icpc FC=ifort --enable-shared CFLAGS="-O3 -ip -xHost" \
>CXXFLAGS="-O3 -ip -xHost" --without-slurm --disable-vt
>--with-verbs=/opt/ofed \
>--with-verbs-libdir=/opt/ofed/lib64 && \
>make clean && \
>make -j4 && \
>make install​
> 
> 
> 
>Help in resolving this issue would be greatly appreciated. 
> 
>Thank you! 
> 
>Esthela Gallardo 

> ___
> users mailing list
> us...@open-mpi.org
> Subscription: http://www.open-mpi.org/mailman/listinfo.cgi/users
> Link to this post: 
> http://www.open-mpi.org/community/lists/users/2014/07/24758.php



pgp1cgAKLKwD6.pgp
Description: PGP signature

Re: [OMPI users] MPI_T Control Variables

2014-07-11 Thread Gallardo, Esthela 
Hi Nathan,

Where can I access the 1.8.2 tarball? I'm not sure if you meant to include it 
as an attachment. If so, then it did not go through.   

Thank you,

Esthela Gallardo

From: users  on behalf of Nathan Hjelm 

Sent: Friday, July 11, 2014 10:50 AM
To: Open MPI Users
Subject: Re: [OMPI users] MPI_T Control Variables

Can you try with a 1.8.2 nightly tarball or the trunk? I fixed a couple
of bugs that varlist discovered (also found some in varlist).

-Nathan Hjelm
HPC-5, LANL

On Fri, Jul 11, 2014 at 04:42:01PM +, Gallardo, Esthela wrote:
>Hi,
>
>I am new to the MPI_T interface, and was trying to run an applications
>developed by LLNL which queries and lists the values of the control
>variables available. The tool can be downloaded from the following site:
>
>https://computation-rnd.llnl.gov/mpi_t/varList.php
>
>I noticed that when I ran the tool, I would encounter the following
>error:
>
>[c557-604:121075] Signal: Segmentation fault (11)
>[c557-604:121075] Signal code: Invalid permissions (2)
>[c557-604:121075] Failing at address: 0x2b54ce9d1418
>[c557-604:121075] [ 0] /lib64/libpthread.so.0[0x397060f710]
>[c557-604:121075] [ 1]
>
> /work/02282/esthela/MPI/install-openmpi-1.8.1/lib/libmpi.so.1(MPI_T_cvar_read+0xc6)[0x2b54cbe55bd6]
>[c557-604:121075] [ 2] ./varlist(list_cvars+0xda7)[0x402e17]
>[c557-604:121075] [ 3] ./varlist(main+0x347)[0x401e37]
>[c557-604:121075] [ 4]
>/lib64/libc.so.6(__libc_start_main+0xfd)[0x396fe1ed1d]
>[c557-604:121075] [ 5] ./varlist[0x401a29]
>[c557-604:121075] *** End of error message ***
>I went ahead and tried to write a code that follows the process in varlist
>to read the control variables, and encountered the same error when I
>called the following function:
>err=MPI_T_cvar_read(handle,val);
>
>Through a recommendation, I ran both my code and the tool using mvapich,
>and could not reproduce the error. I don't know if this is a bug or if I
>didn't configure my installation of OpenMPI correctly. Below is a script
>that I used to install OpenMPI:
>
>set -e
>rm -fr /work/02282/esthela/MPI/install-openmpi-1.8.1 && \
>make clean && \
>./configure --with-cma=yes
>--prefix=/work/02282/esthela/MPI/install-openmpi-1.8.1 \
>CC=icc CXX=icpc FC=ifort --enable-shared CFLAGS="-O3 -ip -xHost" \
>CXXFLAGS="-O3 -ip -xHost" --without-slurm --disable-vt
>--with-verbs=/opt/ofed \
>--with-verbs-libdir=/opt/ofed/lib64 && \
>make clean && \
>make -j4 && \
>make install​
>
>
>
>Help in resolving this issue would be greatly appreciated.
>
>Thank you!
>
>Esthela Gallardo

> ___
> users mailing list
> us...@open-mpi.org
> Subscription: http://www.open-mpi.org/mailman/listinfo.cgi/users
> Link to this post: 
> http://www.open-mpi.org/community/lists/users/2014/07/24758.php

Re: [OMPI users] MPI_T Control Variables

2014-07-11 Thread Nathan Hjelm 
The current nightly tarball can be found at
http://www.open-mpi.org/nightly/v1.8/openmpi-1.8.2a1r32209.tar.gz

-Nathan Hjelm
HPC-5, LANL

On Fri, Jul 11, 2014 at 05:04:07PM +, Gallardo, Esthela wrote:
> Hi Nathan,
> 
> Where can I access the 1.8.2 tarball? I'm not sure if you meant to include it 
> as an attachment. If so, then it did not go through.   
> 
> Thank you,
> 
> Esthela Gallardo
> 
> From: users  on behalf of Nathan Hjelm 
> 
> Sent: Friday, July 11, 2014 10:50 AM
> To: Open MPI Users
> Subject: Re: [OMPI users] MPI_T Control Variables
> 
> Can you try with a 1.8.2 nightly tarball or the trunk? I fixed a couple
> of bugs that varlist discovered (also found some in varlist).
> 
> -Nathan Hjelm
> HPC-5, LANL
> 
> On Fri, Jul 11, 2014 at 04:42:01PM +, Gallardo, Esthela wrote:
> >Hi,
> >
> >I am new to the MPI_T interface, and was trying to run an applications
> >developed by LLNL which queries and lists the values of the control
> >variables available. The tool can be downloaded from the following site:
> >
> >https://computation-rnd.llnl.gov/mpi_t/varList.php
> >
> >I noticed that when I ran the tool, I would encounter the following
> >error:
> >
> >[c557-604:121075] Signal: Segmentation fault (11)
> >[c557-604:121075] Signal code: Invalid permissions (2)
> >[c557-604:121075] Failing at address: 0x2b54ce9d1418
> >[c557-604:121075] [ 0] /lib64/libpthread.so.0[0x397060f710]
> >[c557-604:121075] [ 1]
> >
> > /work/02282/esthela/MPI/install-openmpi-1.8.1/lib/libmpi.so.1(MPI_T_cvar_read+0xc6)[0x2b54cbe55bd6]
> >[c557-604:121075] [ 2] ./varlist(list_cvars+0xda7)[0x402e17]
> >[c557-604:121075] [ 3] ./varlist(main+0x347)[0x401e37]
> >[c557-604:121075] [ 4]
> >/lib64/libc.so.6(__libc_start_main+0xfd)[0x396fe1ed1d]
> >[c557-604:121075] [ 5] ./varlist[0x401a29]
> >[c557-604:121075] *** End of error message ***
> >I went ahead and tried to write a code that follows the process in 
> > varlist
> >to read the control variables, and encountered the same error when I
> >called the following function:
> >err=MPI_T_cvar_read(handle,val);
> >
> >Through a recommendation, I ran both my code and the tool using mvapich,
> >and could not reproduce the error. I don't know if this is a bug or if I
> >didn't configure my installation of OpenMPI correctly. Below is a script
> >that I used to install OpenMPI:
> >
> >set -e
> >rm -fr /work/02282/esthela/MPI/install-openmpi-1.8.1 && \
> >make clean && \
> >./configure --with-cma=yes
> >--prefix=/work/02282/esthela/MPI/install-openmpi-1.8.1 \
> >CC=icc CXX=icpc FC=ifort --enable-shared CFLAGS="-O3 -ip -xHost" \
> >CXXFLAGS="-O3 -ip -xHost" --without-slurm --disable-vt
> >--with-verbs=/opt/ofed \
> >--with-verbs-libdir=/opt/ofed/lib64 && \
> >make clean && \
> >make -j4 && \
> >make install​
> >
> >
> >
> >Help in resolving this issue would be greatly appreciated.
> >
> >Thank you!
> >
> >Esthela Gallardo
> 
> > ___
> > users mailing list
> > us...@open-mpi.org
> > Subscription: http://www.open-mpi.org/mailman/listinfo.cgi/users
> > Link to this post: 
> > http://www.open-mpi.org/community/lists/users/2014/07/24758.php
> ___
> users mailing list
> us...@open-mpi.org
> Subscription: http://www.open-mpi.org/mailman/listinfo.cgi/users
> Link to this post: 
> http://www.open-mpi.org/community/lists/users/2014/07/24760.php


pgpBkYDXJd1Oz.pgp
Description: PGP signature

Re: [OMPI users] MPI_T Control Variables

2014-07-11 Thread Nathan Hjelm 

Hmm, looks like the varlist fixes I provided to LLNL haven't made it
into their git repo. Use the attached version with 1.8.2.

-Nathan

On Fri, Jul 11, 2014 at 05:04:07PM +, Gallardo, Esthela wrote:
> Hi Nathan,
> 
> Where can I access the 1.8.2 tarball? I'm not sure if you meant to include it 
> as an attachment. If so, then it did not go through.   
> 
> Thank you,
> 
> Esthela Gallardo
> 
> From: users  on behalf of Nathan Hjelm 
> 
> Sent: Friday, July 11, 2014 10:50 AM
> To: Open MPI Users
> Subject: Re: [OMPI users] MPI_T Control Variables
> 
> Can you try with a 1.8.2 nightly tarball or the trunk? I fixed a couple
> of bugs that varlist discovered (also found some in varlist).
> 
> -Nathan Hjelm
> HPC-5, LANL
> 
> On Fri, Jul 11, 2014 at 04:42:01PM +, Gallardo, Esthela wrote:
> >Hi,
> >
> >I am new to the MPI_T interface, and was trying to run an applications
> >developed by LLNL which queries and lists the values of the control
> >variables available. The tool can be downloaded from the following site:
> >
> >https://computation-rnd.llnl.gov/mpi_t/varList.php
> >
> >I noticed that when I ran the tool, I would encounter the following
> >error:
> >
> >[c557-604:121075] Signal: Segmentation fault (11)
> >[c557-604:121075] Signal code: Invalid permissions (2)
> >[c557-604:121075] Failing at address: 0x2b54ce9d1418
> >[c557-604:121075] [ 0] /lib64/libpthread.so.0[0x397060f710]
> >[c557-604:121075] [ 1]
> >
> > /work/02282/esthela/MPI/install-openmpi-1.8.1/lib/libmpi.so.1(MPI_T_cvar_read+0xc6)[0x2b54cbe55bd6]
> >[c557-604:121075] [ 2] ./varlist(list_cvars+0xda7)[0x402e17]
> >[c557-604:121075] [ 3] ./varlist(main+0x347)[0x401e37]
> >[c557-604:121075] [ 4]
> >/lib64/libc.so.6(__libc_start_main+0xfd)[0x396fe1ed1d]
> >[c557-604:121075] [ 5] ./varlist[0x401a29]
> >[c557-604:121075] *** End of error message ***
> >I went ahead and tried to write a code that follows the process in 
> > varlist
> >to read the control variables, and encountered the same error when I
> >called the following function:
> >err=MPI_T_cvar_read(handle,val);
> >
> >Through a recommendation, I ran both my code and the tool using mvapich,
> >and could not reproduce the error. I don't know if this is a bug or if I
> >didn't configure my installation of OpenMPI correctly. Below is a script
> >that I used to install OpenMPI:
> >
> >set -e
> >rm -fr /work/02282/esthela/MPI/install-openmpi-1.8.1 && \
> >make clean && \
> >./configure --with-cma=yes
> >--prefix=/work/02282/esthela/MPI/install-openmpi-1.8.1 \
> >CC=icc CXX=icpc FC=ifort --enable-shared CFLAGS="-O3 -ip -xHost" \
> >CXXFLAGS="-O3 -ip -xHost" --without-slurm --disable-vt
> >--with-verbs=/opt/ofed \
> >--with-verbs-libdir=/opt/ofed/lib64 && \
> >make clean && \
> >make -j4 && \
> >make install​
> >
> >
> >
> >Help in resolving this issue would be greatly appreciated.
> >
> >Thank you!
> >
> >Esthela Gallardo
> 
> > ___
> > users mailing list
> > us...@open-mpi.org
> > Subscription: http://www.open-mpi.org/mailman/listinfo.cgi/users
> > Link to this post: 
> > http://www.open-mpi.org/community/lists/users/2014/07/24758.php
> ___
> users mailing list
> us...@open-mpi.org
> Subscription: http://www.open-mpi.org/mailman/listinfo.cgi/users
> Link to this post: 
> http://www.open-mpi.org/community/lists/users/2014/07/24760.php
#include 
#include 
#include 
#include 
#include 

#include 

#define SCREENLEN 78

#ifndef MPI_COUNT
#define MPI_COUNT MPI_INT
typedef int MPI_Count;
#endif

#ifndef MPI_T_CVAR_HANDLE_NULL
#define MPI_T_CVAR_HANDLE_NULL NULL
#endif

#define CHECKERR(errstr,err) if (err!=MPI_SUCCESS) { printf("ERROR: %s: MPI 
error code %i\n",errstr,err); usage(1); } 

int list_pvar,list_cvar,longlist,verbosity,runmpi; 

#define RUNMPI 1

/* Usage */

void usage(int e)
{
printf("Usage: varlist [-c] [-p] [-v ] [-l] [-m]\n");
printf("-c = List only Control Variables\n");
printf("-p = List only Performance Variables\n");
printf("-v = List up to verbosity level  (1=U/B to 9=D/D)\n");
printf("-l = Long list with all information, incl. descriptions\n");
printf("-m = Do not call MPI_Init before listing variables\n");
printf("-h = This help text\n");
exit(e);
}


/* Print a filled string */

void print_filled(char *s, int len, char c)
{
int i;
printf("%s",s);
for (i=strlen(s); imaxnamelen) maxnamelen=namelen;
if (desclen>maxdesclen) maxdesclen=desclen;
if (verbos<=verbosity) numvars++;
}

printf("Found %i performance variables with verbosity <= ",numvars);
print_verbosity_short(verbosity);
printf("\n\n");


/*

Re: [OMPI users] MPI_T Control Variables

2014-07-11 Thread Nathan Hjelm 

Ignore that. Their version is ok. The one I have looks like it is out of
date. Just tested theirs with trunk.

-Nathan

On Fri, Jul 11, 2014 at 11:27:42AM -0600, Nathan Hjelm wrote:
> 
> Hmm, looks like the varlist fixes I provided to LLNL haven't made it
> into their git repo. Use the attached version with 1.8.2.
> 
> -Nathan
> 
> On Fri, Jul 11, 2014 at 05:04:07PM +, Gallardo, Esthela wrote:
> > Hi Nathan,
> > 
> > Where can I access the 1.8.2 tarball? I'm not sure if you meant to include 
> > it as an attachment. If so, then it did not go through.   
> > 
> > Thank you,
> > 
> > Esthela Gallardo
> > 
> > From: users  on behalf of Nathan Hjelm 
> > 
> > Sent: Friday, July 11, 2014 10:50 AM
> > To: Open MPI Users
> > Subject: Re: [OMPI users] MPI_T Control Variables
> > 
> > Can you try with a 1.8.2 nightly tarball or the trunk? I fixed a couple
> > of bugs that varlist discovered (also found some in varlist).
> > 
> > -Nathan Hjelm
> > HPC-5, LANL
> > 
> > On Fri, Jul 11, 2014 at 04:42:01PM +, Gallardo, Esthela wrote:
> > >Hi,
> > >
> > >I am new to the MPI_T interface, and was trying to run an applications
> > >developed by LLNL which queries and lists the values of the control
> > >variables available. The tool can be downloaded from the following 
> > > site:
> > >
> > >https://computation-rnd.llnl.gov/mpi_t/varList.php
> > >
> > >I noticed that when I ran the tool, I would encounter the following
> > >error:
> > >
> > >[c557-604:121075] Signal: Segmentation fault (11)
> > >[c557-604:121075] Signal code: Invalid permissions (2)
> > >[c557-604:121075] Failing at address: 0x2b54ce9d1418
> > >[c557-604:121075] [ 0] /lib64/libpthread.so.0[0x397060f710]
> > >[c557-604:121075] [ 1]
> > >
> > > /work/02282/esthela/MPI/install-openmpi-1.8.1/lib/libmpi.so.1(MPI_T_cvar_read+0xc6)[0x2b54cbe55bd6]
> > >[c557-604:121075] [ 2] ./varlist(list_cvars+0xda7)[0x402e17]
> > >[c557-604:121075] [ 3] ./varlist(main+0x347)[0x401e37]
> > >[c557-604:121075] [ 4]
> > >/lib64/libc.so.6(__libc_start_main+0xfd)[0x396fe1ed1d]
> > >[c557-604:121075] [ 5] ./varlist[0x401a29]
> > >[c557-604:121075] *** End of error message ***
> > >I went ahead and tried to write a code that follows the process in 
> > > varlist
> > >to read the control variables, and encountered the same error when I
> > >called the following function:
> > >err=MPI_T_cvar_read(handle,val);
> > >
> > >Through a recommendation, I ran both my code and the tool using 
> > > mvapich,
> > >and could not reproduce the error. I don't know if this is a bug or if 
> > > I
> > >didn't configure my installation of OpenMPI correctly. Below is a 
> > > script
> > >that I used to install OpenMPI:
> > >
> > >set -e
> > >rm -fr /work/02282/esthela/MPI/install-openmpi-1.8.1 && \
> > >make clean && \
> > >./configure --with-cma=yes
> > >--prefix=/work/02282/esthela/MPI/install-openmpi-1.8.1 \
> > >CC=icc CXX=icpc FC=ifort --enable-shared CFLAGS="-O3 -ip -xHost" \
> > >CXXFLAGS="-O3 -ip -xHost" --without-slurm --disable-vt
> > >--with-verbs=/opt/ofed \
> > >--with-verbs-libdir=/opt/ofed/lib64 && \
> > >make clean && \
> > >make -j4 && \
> > >make install​
> > >
> > >
> > >
> > >Help in resolving this issue would be greatly appreciated.
> > >
> > >Thank you!
> > >
> > >Esthela Gallardo
> > 
> > > ___
> > > users mailing list
> > > us...@open-mpi.org
> > > Subscription: http://www.open-mpi.org/mailman/listinfo.cgi/users
> > > Link to this post: 
> > > http://www.open-mpi.org/community/lists/users/2014/07/24758.php
> > ___
> > users mailing list
> > us...@open-mpi.org
> > Subscription: http://www.open-mpi.org/mailman/listinfo.cgi/users
> > Link to this post: 
> > http://www.open-mpi.org/community/lists/users/2014/07/24760.php

> #include 
> #include 
> #include 
> #include 
> #include 
> 
> #include 
> 
> #define SCREENLEN 78
> 
> #ifndef MPI_COUNT
> #define MPI_COUNT MPI_INT
> typedef int MPI_Count;
> #endif
> 
> #ifndef MPI_T_CVAR_HANDLE_NULL
> #define MPI_T_CVAR_HANDLE_NULL NULL
> #endif
> 
> #define CHECKERR(errstr,err) if (err!=MPI_SUCCESS) { printf("ERROR: %s: MPI 
> error code %i\n",errstr,err); usage(1); } 
> 
> int list_pvar,list_cvar,longlist,verbosity,runmpi; 
> 
> #define RUNMPI 1
> 
> /* Usage */
> 
> void usage(int e)
> {
>   printf("Usage: varlist [-c] [-p] [-v ] [-l] [-m]\n");
>   printf("-c = List only Control Variables\n");
>   printf("-p = List only Performance Variables\n");
>   printf("-v = List up to verbosity level  (1=U/B to 9=D/D)\n");
>   printf("-l = Long list with all information, incl. descriptions\n");
>   printf("-m = Do not call MPI_Init before listing variables\n");
>   printf("-h = This help text\n");
>