[OMPI users] Open-mpi running issue and bug

2012-12-28 Thread Edge Edge
Hi,

Currently I was trying to run mpirun to improve the performance of my running.
However it keeps on showing the following bug:

--
It looks like opal_init failed for some reason; your parallel process is
likely to abort.  There are many reasons that a parallel process can
fail during opal_init; some of which are due to configuration or
environment problems.  This failure appears to be an internal failure;
here's some additional information (which may only be relevant to an
Open MPI developer):

  opal_shmem_base_select failed
  --> Returned value -1 instead of OPAL_SUCCESS
--
[home:07059] [[INVALID],INVALID] ORTE_ERROR_LOG: Error in file 
runtime/orte_init.c at line 79
[home:07059] [[INVALID],INVALID] ORTE_ERROR_LOG: Error in file orterun.c at 
line 694
make: *** [sample-1.fa] Error 255

Can I know how to solve this bug?
I got try to google around but I still fail to find related answer.

Below is the spec of my server:
Linux home 2.6.32-71.el6.x86_64 #1 SMP Wed Sep 1 01:33:01 EDT 2010 x86_64 
x86_64 x86_64 GNU/Linux


Hope it is useful for you in order to solve the bug.

Thanks.


best regards
Edge

Re: [OMPI users] Open-mpi running issue and bug

2012-12-28 Thread Ralph Castain
What version of OMPI are you using? How was it configured?


On Dec 28, 2012, at 2:16 AM, Edge Edge  wrote:

> Hi,
> 
> Currently I was trying to run mpirun to improve the performance of my running.
> However it keeps on showing the following bug:
> 
> --
> It looks like opal_init failed for some reason; your parallel process is
> likely to abort.  There are many reasons that a parallel process can
> fail during opal_init; some of which are due to configuration or
> environment problems.  This failure appears to be an internal failure;
> here's some additional information (which may only be relevant to an
> Open MPI developer):
> 
>   opal_shmem_base_select failed
>   --> Returned value -1 instead of OPAL_SUCCESS
> --
> [home:07059] [[INVALID],INVALID] ORTE_ERROR_LOG: Error in file 
> runtime/orte_init.c at line 79
> [home:07059] [[INVALID],INVALID] ORTE_ERROR_LOG: Error in file orterun.c at 
> line 694
> make: *** [sample-1.fa] Error 255
> 
> Can I know how to solve this bug?
> I got try to google around but I still fail to find related answer.
> 
> Below is the spec of my server:
> Linux home 2.6.32-71.el6.x86_64 #1 SMP Wed Sep 1 01:33:01 EDT 2010 x86_64 
> x86_64 x86_64 GNU/Linux
> 
> Hope it is useful for you in order to solve the bug.
> 
> Thanks.
> 
> 
> best regards
> Edge
> 
> 
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