Re: [OMPI users] MPI Error
Hi Jeff, I have changed the position of malloc.h in header files list. I moved it up above mpi.h. Now I am getting a different error message see following, [asad@stat74 T]$ mpirun --np 4 nice -10 ./lisa09EMRIT-P +---[ lisa14.c ]--- | This is process #0 of 4 | initialising : 21.12.2008 21:59:28 Allocating 134217728 bytes for read buffer... Allocating 134217728 bytes for read buffer... Allocating 134217728 bytes for read buffer... Allocating 134217728 bytes for read buffer... Allocating 134217728 bytes for read buffer... Allocating 134217728 bytes for read buffer... Allocating 134217728 bytes for read buffer... -+--> INJECTING SIGNAL... Allocating 134217728 bytes for read buffer... -+--> INJECTING SIGNAL... -+--> INJECTING SIGNAL... -+--> INJECTING SIGNAL... 524765 524765 524765 524765 | initialising `TDI framework' (might take several minutes)... Signal:6 info.si_errno:0(Success) si_code:-6() [0] func:/usr/lib/openmpi/libopal.so.0 [0x46efd6] [1] func:[0x110440] [2] func:[0x110402] [3] func:/lib/libc.so.6(gsignal+0x50) [0x2c1fa0] [4] func:/lib/libc.so.6(abort+0x101) [0x2c38b1] [5] func:/usr/lib/openmpi/libopal.so.0 [0x473d34] [6] func:/usr/lib/openmpi/libopal.so.0(free+0x36) [0x473786] [7] func:./lisa09EMRIT-P(main+0x454) [0x80566f4] [8] func:/lib/libc.so.6(__libc_start_main+0xe0) [0x2aef70] [9] func:./lisa09EMRIT-P [0x804af21] *** End of error message *** Its good that now no user defined functions in code are involved in error (it was giving error messages for some of my defined functions too). malloc.h has also been disappeared in this error message as was in previous message. I have used valgrind to see where the error is but I am unable to interpret the following valgrind output error message. --16515--object doesn't have a symbol table --16515-- Reading syms from /usr/lib/openmpi/openmpi/mca_osc_pt2pt.so (0x4114000) --16515--object doesn't have a symbol table ==16513== Warning: set address range perms: large range 536870912 (defined) ==16512== Warning: set address range perms: large range 536870912 (defined) ==16514== Warning: set address range perms: large range 536870912 (defined) ==16515== Warning: set address range perms: large range 536870912 (defined) +---[ lisa14.c ]--- | This is process #0 of 4 | initialising : 21.12.2008 21:15:37 Allocating 134217728 bytes for read buffer... ==16515== Warning: set address range perms: large range 134221824 (defined) Allocating 134217728 bytes for read buffer... ==16514== Warning: set address range perms: large range 134221824 (defined) Allocating 134217728 bytes for read buffer... ==16513== Warning: set address range perms: large range 134221824 (defined) Allocating 134217728 bytes for read buffer... ==16512== Warning: set address range perms: large range 134221824 (defined) ==16515== Warning: set address range perms: large range 134217728 (defined) ==16514== Warning: set address range perms: large range 134217728 (defined) ==16513== Warning: set address range perms: large range 134217728 (defined) ==16512== Warning: set address range perms: large range 134217728 (defined) ==16515== Warning: set address range perms: large range 134221824 (noaccess) ==16514== Warning: set address range perms: large range 134221824 (noaccess) ==16513== Warning: set address range perms: large range 134221824 (noaccess) ==16512== Warning: set address range perms: large range 134221824 (noaccess) --16515-- memcheck GC: 1024 nodes, 1024 survivors (100.0%) --16515-- memcheck GC: increase table size to 2048 --16513-- memcheck GC: 1024 nodes, 1024 survivors (100.0%) --16513-- memcheck GC: increase table size to 2048 --16514-- memcheck GC: 1024 nodes, 1024 survivors (100.0%) --16514-- memcheck GC: increase table size to 2048 --16512-- memcheck GC: 1024 nodes, 1024 survivors (100.0%) --16512-- memcheck GC: increase table size to 2048 --16513-- memcheck GC: 2048 nodes, 2048 survivors (100.0%) --16513-- memcheck GC: increase table size to 4096 --16514-- memcheck GC: 2048 nodes, 2048 survivors (100.0%) --16514-- memcheck GC: increase table size to 4096 --16515-- memcheck GC: 2048 nodes, 2048 survivors (100.0%) --16515-- memcheck GC: increase table size to 4096 --16512-- memcheck GC: 2048 nodes, 2048 survivors (100.0%) --16512-- memcheck GC: increase table size to 4096 Allocating 134217728 bytes for read buffer... ==16515== Warning: set address range perms: large range 134221824 (defined) Allocating 134217728 bytes for read buffer... ==16513== Warning: set address range perms: large range 134221824 (defined) Allocating 134217728 bytes for read buffer... ==16514== Warning: set address range perms: large range 134221824 (defined) ==16515== Warning: set address range perms: large range 134217728 (defined) ==16513== Warning: set address range perms: large range 134217728 (defined) ==16514== Warning: set address range perms: large range 134217728 (defined) ==16515== Warning:
Re: [OMPI users] MPI Error
It's not the valgrind that are telling here -- it's the fact that something is saying "INJECTING SIGNAL..." It looks like something in your program is calling abort() (signal 6 is the abort signal). On Dec 21, 2008, at 4:08 AM, Asad Ali wrote: --===1267833741== Content-Type: multipart/alternative; boundary="=_Part_48219_1955003.1229850505418" --=_Part_48219_1955003.1229850505418 Content-Type: text/plain; charset=ISO-8859-1 Content-Transfer-Encoding: 7bit Content-Disposition: inline Hi Jeff, I have changed the position of malloc.h in header files list. I moved it up above mpi.h. Now I am getting a different error message see following, [asad@stat74 T]$ mpirun --np 4 nice -10 ./lisa09EMRIT-P +---[ lisa14.c ]--- | This is process #0 of 4 | initialising : 21.12.2008 21:59:28 Allocating 134217728 bytes for read buffer... Allocating 134217728 bytes for read buffer... Allocating 134217728 bytes for read buffer... Allocating 134217728 bytes for read buffer... Allocating 134217728 bytes for read buffer... Allocating 134217728 bytes for read buffer... Allocating 134217728 bytes for read buffer... -+--> INJECTING SIGNAL... Allocating 134217728 bytes for read buffer... -+--> INJECTING SIGNAL... -+--> INJECTING SIGNAL... -+--> INJECTING SIGNAL... 524765 524765 524765 524765 | initialising `TDI framework' (might take several minutes)... Signal:6 info.si_errno:0(Success) si_code:-6() [0] func:/usr/lib/openmpi/libopal.so.0 [0x46efd6] [1] func:[0x110440] [2] func:[0x110402] [3] func:/lib/libc.so.6(gsignal+0x50) [0x2c1fa0] [4] func:/lib/libc.so.6(abort+0x101) [0x2c38b1] [5] func:/usr/lib/openmpi/libopal.so.0 [0x473d34] [6] func:/usr/lib/openmpi/libopal.so.0(free+0x36) [0x473786] [7] func:./lisa09EMRIT-P(main+0x454) [0x80566f4] [8] func:/lib/libc.so.6(__libc_start_main+0xe0) [0x2aef70] [9] func:./lisa09EMRIT-P [0x804af21] *** End of error message *** Its good that now no user defined functions in code are involved in error (it was giving error messages for some of my defined functions too). malloc.h has also been disappeared in this error message as was in previous message. I have used valgrind to see where the error is but I am unable to interpret the following valgrind output error message. --16515--object doesn't have a symbol table --16515-- Reading syms from /usr/lib/openmpi/openmpi/mca_osc_pt2pt.so (0x4114000) --16515--object doesn't have a symbol table ==16513== Warning: set address range perms: large range 536870912 (defined) ==16512== Warning: set address range perms: large range 536870912 (defined) ==16514== Warning: set address range perms: large range 536870912 (defined) ==16515== Warning: set address range perms: large range 536870912 (defined) +---[ lisa14.c ]--- | This is process #0 of 4 | initialising : 21.12.2008 21:15:37 Allocating 134217728 bytes for read buffer... ==16515== Warning: set address range perms: large range 134221824 (defined) Allocating 134217728 bytes for read buffer... ==16514== Warning: set address range perms: large range 134221824 (defined) Allocating 134217728 bytes for read buffer... ==16513== Warning: set address range perms: large range 134221824 (defined) Allocating 134217728 bytes for read buffer... ==16512== Warning: set address range perms: large range 134221824 (defined) ==16515== Warning: set address range perms: large range 134217728 (defined) ==16514== Warning: set address range perms: large range 134217728 (defined) ==16513== Warning: set address range perms: large range 134217728 (defined) ==16512== Warning: set address range perms: large range 134217728 (defined) ==16515== Warning: set address range perms: large range 134221824 (noaccess) ==16514== Warning: set address range perms: large range 134221824 (noaccess) ==16513== Warning: set address range perms: large range 134221824 (noaccess) ==16512== Warning: set address range perms: large range 134221824 (noaccess) --16515-- memcheck GC: 1024 nodes, 1024 survivors (100.0%) --16515-- memcheck GC: increase table size to 2048 --16513-- memcheck GC: 1024 nodes, 1024 survivors (100.0%) --16513-- memcheck GC: increase table size to 2048 --16514-- memcheck GC: 1024 nodes, 1024 survivors (100.0%) --16514-- memcheck GC: increase table size to 2048 --16512-- memcheck GC: 1024 nodes, 1024 survivors (100.0%) --16512-- memcheck GC: increase table size to 2048 --16513-- memcheck GC: 2048 nodes, 2048 survivors (100.0%) --16513-- memcheck GC: increase table size to 4096 --16514-- memcheck GC: 2048 nodes, 2048 survivors (100.0%) --16514-- memcheck GC: increase table size to 4096 --16515-- memcheck GC: 2048 nodes, 2048 survivors (100.0%) --16515-- memcheck GC: increase table size to 4096 --16512-- memcheck GC: 2048 nodes, 2048 survivors (100.0%) --16512-- memcheck GC: increase table size to 4096 Allocating 134217728 bytes for read buffer
Re: [OMPI users] Bug in 1.3 nightly
Can you provide any further details? See http://www.open-mpi.org/community/help/ . On Dec 16, 2008, at 3:27 AM, Gabriele Fatigati wrote: Dear OpenMPI developers, trying to compile 1.3 nightly version , i get the follow error: ../../../orte/.libs/libopen-rte.so: undefined reference to `ORTE_NAME_PRINT' ../../../orte/.libs/libopen-rte.so: undefined reference to `ORTE_JOBID_PRINT' The version affected are: openmpi-1.3rc3r20130 openmpi-1.3rc3r20107 openmpi-1.3rc3r20092 openmpi-1.3rc2r20084 Thanks in advance. -- Ing. Gabriele Fatigati Parallel programmer CINECA Systems & Tecnologies Department Supercomputing Group Via Magnanelli 6/3, Casalecchio di Reno (BO) Italy www.cineca.itTel: +39 051 6171722 g.fatig...@cineca.it ___ users mailing list us...@open-mpi.org http://www.open-mpi.org/mailman/listinfo.cgi/users -- Jeff Squyres Cisco Systems
[OMPI users] Mi Yan is out of the office.
I will be out of the office starting 12/21/2008 and will not return until 01/02/2009.
