[sage-support] Re: Reverse sage_root-5.13

2014-03-09 Thread Dima Pasechnik
On 2014-03-09, Bikerman  wrote:
> I thought it might require more horsepower than I have on this server 
> (under 2gig memory and single processor CENTOS.  I had a few problems 
> getting 5.10 and then 6.0 installed - the installation (source) bombs when 
> it runs out of memory - usually on Linbook - and I have to put the server 
> into a deep coma before I can get a clean install. Once done then it runs 
> fine with my other stuff - Apache web-server mainly.  I can't just add more 
> virtual because its a VPS, and although I can hack a swapfile using a 
> couple of tricks, it doesn't seem to help much. It needs over a gig of free 
> memory before it will even get close to a clean run.
>
You might try using git to repair what's damaged by your package
installation. Probably just one command:

git checkout master

will do the trick.
See http://www.sagemath.org/doc/developer/manual_git.html
for more details.


> Do you happen to know if 6.11 is hungrier than 6.0? If it hasn't done a 
> Microsoft (ie bloated at least 10% on each minor release and up to 100% per 
> major) then it would make sense to give it a go.

I don't think it is much different in this way. 
You can try using git
to pull the updates and then run make. It might work without the need
to rebuild the whole thing.

>
> (Now...where's my server hammer? I'll need to put the little guy to sleep 
> to stop him squirming around and spoiling the surgery.  :-)
>
> On Saturday, 8 March 2014 17:50:30 UTC, Dima Pasechnik wrote:
>>
>> On 2014-03-08, Bikerman > wrote: 
>> > Is there a simple way to reverse the effect of loading spkg 
>> sage_root-5.13 
>> > into a sage 6.0 installation. 
>> > I installed it by accident (forgot to delete it from a file holding the 
>> > names of spkg installs to batch) and naturally the installation now 
>> fails 
>> > to recognise the packages previously installed. It will take some while 
>> to 
>> > reinstall them all, so I'm wondering if there is a quick and dirty way 
>> to 
>> > just reverse the effects, since I'm pretty sure the package only reset 
>> an 
>> > index and didn't actually uninstall anything. 
>> The package had overwritten a bunch of stuff, I guess. 
>> Do you have any pressing reason not to upgrade to Sage 6.1.1 ? 
>> This would have been the simplest way out... 
>>
>>
>

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[sage-support] I get lost

2014-03-09 Thread Larisa Mazurkevich
I get lost where I must post the new message/ I'd like to see my message 
immidiatly jn the first line of incoming group/ But I cannot find my lines only
between sended What am I doing wrong?

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[sage-support] Modelica & Sage

2014-03-09 Thread Peter Balazovic
Is there any use of Modelica (OpenModelica) within sage?
BR/P

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[sage-support] Re: `GLIBC_2.14' not found' running make on 64-bit Sage 4.8 Install: ???

2014-03-09 Thread Chak Wing Sin
On Monday, 9 April 2012 23:20:26 UTC+8, rvau...@gmail.com  wrote:
> Trying to install 64-bit Sage 4.8.  Run make, receive...
> 
> "Installing c_lib
> python: /lib64/libc.so.6: version `GLIBC_2.14' not found 
> (required by 
> /spare/sage/sage-4.8-linux-64bit-fedora_release_16_verne_-x86_64-Linux/local/lib/libpython2.6.so.1.0)
> ERROR: There was an error building c_lib."
> 
> When I "rpm -qa|grep glibc" I get:
> glibc-2.5-81.el5_8.1.i686
> glibc-2.5-81.el5_8.1.x86_64
> glibc-devel-2.5-81.el5_8.1.i386
> glibc-devel-2.5-81.el5_8.1.x86_64
> glibc-common-2.5-81.el5_8.1.x86_64
> glibc-headers-2.5-81.el5_8.1.x86_64
> glibc-utils-2.5-81.el5_8.1.x86_64"
> 
> When I "yum list |grep glibc" I get:
> glibc.i686    2.5-81.el5_8.1 installed
> glibc.x86_64  2.5-81.el5_8.1 installed
> glibc-common.x86_64   2.5-81.el5_8.1 installed
> glibc-devel.i386  2.5-81.el5_8.1 installed
> glibc-devel.x86_64    2.5-81.el5_8.1 installed
> glibc-headers.x86_64  2.5-81.el5_8.1 installed
> glibc-utils.x86_64    2.5-81.el5_8.1 installed
> compat-glibc.i386 1:2.3.4-2.26   sl-base
> compat-glibc.x86_64   1:2.3.4-2.26   sl-base
> compat-glibc-headers.x86_64   1:2.3.4-2.26   sl-base"
> 
> Thoughts/experience re this?
> 
> Thanks,
> -Richard Vaughn

I have a similar issue with Glibc.  My system has Glibc6 installed.
Sage would not start.

Any suggestion as to how to resolve this?

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[sage-support] Re: jmol on notebook blocked in firefox

2014-03-09 Thread ssinglet
I'll try this again; google groups just gave me a "This message has been 
deleted" after I posted...anyone know why this happened?


On Thursday, March 6, 2014 8:48:28 AM UTC-6, Luis Finotti wrote:
>
> Dear all,
>
> I am making a presentation of Sage for undergraduate math students next 
> week, and when trying some old example I see that I cannot make a 3D graph 
> interactive anymore.
>
> The first error is that the java plugin is "out of date and vulnerable".  
> I've installed the latest plugin (from 
> http://www.oracle.com/technetwork/java/javase/downloads/jdk7-downloads-1880260.html,
>  
> namely Java Plug-in 1.7.0_25) and the problem persists.  (I had tried 
> open-jdk and icedtea in the past, and they seemed not to work well with 
> sage/jmol, at least at the time).
>
> I'm running sage-6.1.1, on 64-bit up to date Debian Unstable (Linux), with 
> Firefox 27 and Chromium 32.
>
> If I try to allow (by clicking on "run once"), I get a message "Your 
> security setting have blocked an application from running with an 
> out-of-date or expired version of Java."
>
>
I have a similar Ubuntu setup with java-7-oracle and saw the same problems 
with sage cell server 3d plots trying to start jmol.  Here was what worked 
for me:
- Run the "jconfig" application (mine was in the path at /usr/bin/jconfig; 
"locate" might find it elsewhere)
- Click Security tab, click "Enable Java content in the browser", lower 
Security Level to "Medium",
- I also added "https://cloud.sagemath.com"; to the Exception Site List, but 
if you're running a "local install", may not need this.

Starting jmol will give some warning messages, but it seems to work fine.

Hope this works for you, too.
SSingleton

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[sage-support] Re: View dynamic Sage tutorial from local program

2014-03-09 Thread Larisa Mazurkevich
On Friday, March 7, 2014 5:30:50 AM UTC+4, J. R. L. wrote:
> I'm trying to view the "dynamic" (not static) version of the Sage tutorial 
> from my locally started instance of Sage. I'm running version 5.13 on Windows 
> 7 (through VirtualBox), and whenever I click "Help", I can view the static 
> version, but the link for the interactive tutorial only returns a dead page. 
> I know I can do this online, but is there a way to access this from my copy 
> of Sage? Thanks!

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[sage-support] Change color in command line

2014-03-09 Thread Nitin Prasad
Hi all, 

I've started using Sage (mostly from the command line) and I've noticed by 
default a lot of the output text is colored blue. This is very difficult to see 
on the background of the terminal, so I was wondering if there was any way to 
change this easily? There was one topic posted here a while ago but that was 
about changing the color of the text on the notebook; I want this for the 
command line.

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Re: [sage-support] Re: Sagetex issues

2014-03-09 Thread sdermon
Hi, it's been a really long time since my previous post.

I had given up trying to use sagetex (I actually had completely forgotten about 
it). But then recently, I rediscovered it and decided I should try to use it 
again.

I am still having issues with the example file, so I'll copy paste the error 
below :

Sage commandline 6
Traceback (most recent call last):
  File "/Users/sdermon/Documents/popo/example.sagetex.py", line 367, in 
_st_.endofdoc()
  File 
"/Applications/Sage-6.1.1.app/Contents/Resources/sage/local/lib/python2.7/site-packages/sagetex.py",
 line 282, in endofdoc
sagef = open(self.filename + '.sagetex.sage', 'r')
IOError: [Errno 2] No such file or directory: 'example.sagetex.sage'
logout

I have Python/Sage/TeXLive running fine with no issues whatsoever but I'm still 
having issues with this file.

I thank you in advance for any helpful advice you may give.
Samuel DM

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[sage-support] Re: jmol on notebook blocked in firefox

2014-03-09 Thread ssinglet
Hello,

On Thursday, March 6, 2014 8:48:28 AM UTC-6, Luis Finotti wrote:
>
> Dear all,
>
>
> The first error is that the java plugin is "out of date and vulnerable".  
> I've installed the latest plugin (from 
> http://www.oracle.com/technetwork/java/javase/downloads/jdk7-downloads-1880260.html,
>  
> namely Java Plug-in 1.7.0_25) and the problem persists.  (I had tried 
> open-jdk and icedtea in the past, and they seemed not to work well with 
> sage/jmol, at least at the time).
>
> I'm running sage-6.1.1, on 64-bit up to date Debian Unstable (Linux), with 
> Firefox 27 and Chromium 32.
>
> I had a similar problem with the sage cell server. My system: Ubuntu 
12.04-32, Chromium 32, FF 27, java-7-oracle. The fix for me: found an 
application called jcontrol; I used "locate jcontrol" and found it hiding 
at:

/usr/bin/jcontrol
/usr/lib/jvm/java-7-oracle/bin/jcontrol
/usr/lib/jvm/java-7-oracle/jre/bin/jcontrol

Run jcontrol; click the "Security" tab; click "Enable Java content in the 
browser", lower the security slider to "Medium", add 
"https://cloud.sagemath.com"; to the Exception Site List.   I still get 
various security warnings, but jmol now works inline. The slider and 
exception list are probably redundant, but now java works on other sites, 
too.

Hope it works for you!
SSingleton


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Re: [sage-support] Change color in command line

2014-03-09 Thread Jan Groenewald
Would be nice to have a general theme toggle. background=dark or
background=light, like vim. Also, on systems with default black background
terminals, background=dark default would be nice.

Regards,
Jan



On 9 March 2014 01:05, Nitin Prasad  wrote:

> Hi all,
>
> I've started using Sage (mostly from the command line) and I've noticed by
> default a lot of the output text is colored blue. This is very difficult to
> see on the background of the terminal, so I was wondering if there was any
> way to change this easily? There was one topic posted here a while ago but
> that was about changing the color of the text on the notebook; I want this
> for the command line.
>
> --
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>



-- 
  .~.
  /V\ Jan Groenewald
 /( )\www.aims.ac.za
 ^^-^^

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Re: [sage-support] Change color in command line

2014-03-09 Thread John H Palmieri
The colors are controlled by IPython. You should be able to create a file 
$HOME/.sage/ipython-0.12/profile_sage/ipython_config.py with the lines

c = get_config()
# Set the color scheme (NoColor, Linux, or LightBG).
c.TerminalInteractiveShell.colors = 'Linux'

for example, to change the color scheme. See 
http://ipython.org/ipython-doc/rel-1.0.0/config/old.html#color for some 
more information. You can also run "sage --ipython config -h" for a help 
message about configuring IPython.

It might not be a bad idea to have several of our own pre-defined color 
schemes, with switches for the as Jan suggests...

  John





On Sunday, March 9, 2014 8:13:02 AM UTC-7, Jan Groenewald wrote:
>
> Would be nice to have a general theme toggle. background=dark or 
> background=light, like vim. Also, on systems with default black background 
> terminals, background=dark default would be nice.
>
> Regards,
> Jan
>
>
>
> On 9 March 2014 01:05, Nitin Prasad > wrote:
>
>> Hi all,
>>
>> I've started using Sage (mostly from the command line) and I've noticed 
>> by default a lot of the output text is colored blue. This is very difficult 
>> to see on the background of the terminal, so I was wondering if there was 
>> any way to change this easily? There was one topic posted here a while ago 
>> but that was about changing the color of the text on the notebook; I want 
>> this for the command line.
>>
>> --
>> You received this message because you are subscribed to the Google Groups 
>> "sage-support" group.
>> To unsubscribe from this group and stop receiving emails from it, send an 
>> email to sage-support...@googlegroups.com .
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>> .
>> Visit this group at http://groups.google.com/group/sage-support.
>> For more options, visit https://groups.google.com/d/optout.
>>
>
>
>
> -- 
>   .~. 
>   /V\ Jan Groenewald
>  /( )\www.aims.ac.za
>  ^^-^^ 
>  

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[sage-support] Re: `GLIBC_2.14' not found' running make on 64-bit Sage 4.8 Install: ???

2014-03-09 Thread Volker Braun
Compile from source

On Saturday, March 8, 2014 4:39:09 AM UTC, Chak Wing Sin wrote:
>
> On Monday, 9 April 2012 23:20:26 UTC+8, rvau...@gmail.com  wrote: 
> > Trying to install 64-bit Sage 4.8.  Run make, receive... 
> > 
> > "Installing c_lib 
> > python: /lib64/libc.so.6: version `GLIBC_2.14' not found 
> > (required by 
> /spare/sage/sage-4.8-linux-64bit-fedora_release_16_verne_-x86_64-Linux/local/lib/libpython2.6.so.1.0)
>  
>
> > ERROR: There was an error building c_lib." 
> > 
> > When I "rpm -qa|grep glibc" I get: 
> > glibc-2.5-81.el5_8.1.i686 
> > glibc-2.5-81.el5_8.1.x86_64 
> > glibc-devel-2.5-81.el5_8.1.i386 
> > glibc-devel-2.5-81.el5_8.1.x86_64 
> > glibc-common-2.5-81.el5_8.1.x86_64 
> > glibc-headers-2.5-81.el5_8.1.x86_64 
> > glibc-utils-2.5-81.el5_8.1.x86_64" 
> > 
> > When I "yum list |grep glibc" I get: 
> > glibc.i6862.5-81.el5_8.1 
> installed 
> > glibc.x86_64  2.5-81.el5_8.1 
> installed 
> > glibc-common.x86_64   2.5-81.el5_8.1 
> installed 
> > glibc-devel.i386  2.5-81.el5_8.1 
> installed 
> > glibc-devel.x86_642.5-81.el5_8.1 
> installed 
> > glibc-headers.x86_64  2.5-81.el5_8.1 
> installed 
> > glibc-utils.x86_642.5-81.el5_8.1 
> installed 
> > compat-glibc.i386 1:2.3.4-2.26   
> sl-base 
> > compat-glibc.x86_64   1:2.3.4-2.26   
> sl-base 
> > compat-glibc-headers.x86_64   1:2.3.4-2.26   
> sl-base" 
> > 
> > Thoughts/experience re this? 
> > 
> > Thanks, 
> > -Richard Vaughn 
>
> I have a similar issue with Glibc.  My system has Glibc6 installed. 
> Sage would not start. 
>
> Any suggestion as to how to resolve this?

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Re: [sage-support] Change color in command line

2014-03-09 Thread Nitin Prasad
Thank you very much for the assistance! 

I'd like to try to add the ability to toggle colors in sage itself. As a 
new user (and developer), I'd appreciate you input. Would a good way to go 
about this be to add a target to the Makefile that creates a file like you 
described, and then create a function in sage that will modify this upon 
request? Also, when you mentioned 

"It might not be a bad idea to have several of our own pre-defined color 
schemes"

I noticed that the preset values of Linux and LightBG basically correspond 
to dark and light background respectively, so making our own color seems 
would be a bit redundant. Did you have any other color schemes in mind? 

Thanks, 

Nitin Prasad

On Sunday, March 9, 2014 1:46:59 PM UTC-5, John H Palmieri wrote:
>
> The colors are controlled by IPython. You should be able to create a file 
> $HOME/.sage/ipython-0.12/profile_sage/ipython_config.py with the lines
>
> c = get_config()
> # Set the color scheme (NoColor, Linux, or LightBG).
> c.TerminalInteractiveShell.colors = 'Linux'
>
> for example, to change the color scheme. See 
> http://ipython.org/ipython-doc/rel-1.0.0/config/old.html#color for some 
> more information. You can also run "sage --ipython config -h" for a help 
> message about configuring IPython.
>
> It might not be a bad idea to have several of our own pre-defined color 
> schemes, with switches for the as Jan suggests...
>
>   John
>
>
>
>
>
> On Sunday, March 9, 2014 8:13:02 AM UTC-7, Jan Groenewald wrote:
>>
>> Would be nice to have a general theme toggle. background=dark or 
>> background=light, like vim. Also, on systems with default black background 
>> terminals, background=dark default would be nice.
>>
>> Regards,
>> Jan
>>
>>
>>
>> On 9 March 2014 01:05, Nitin Prasad  wrote:
>>
>>> Hi all,
>>>
>>> I've started using Sage (mostly from the command line) and I've noticed 
>>> by default a lot of the output text is colored blue. This is very difficult 
>>> to see on the background of the terminal, so I was wondering if there was 
>>> any way to change this easily? There was one topic posted here a while ago 
>>> but that was about changing the color of the text on the notebook; I want 
>>> this for the command line.
>>>
>>> --
>>> You received this message because you are subscribed to the Google 
>>> Groups "sage-support" group.
>>> To unsubscribe from this group and stop receiving emails from it, send 
>>> an email to sage-support...@googlegroups.com.
>>> To post to this group, send email to sage-s...@googlegroups.com.
>>> Visit this group at http://groups.google.com/group/sage-support.
>>> For more options, visit https://groups.google.com/d/optout.
>>>
>>
>>
>>
>> -- 
>>   .~. 
>>   /V\ Jan Groenewald
>>  /( )\www.aims.ac.za
>>  ^^-^^ 
>>  
>

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Re: [sage-support] Change color in command line

2014-03-09 Thread John H Palmieri
Maybe we don't need any more color schemes; I certainly don't have anything 
in mind. I just use the default one all of the time.

Rather than a Makefile target, a Sage command to change on-the-fly would be 
nice. You might investigate whether IPython allows changing color schemes 
while it's running, or if it needs to be restarted for such changes to take 
effect. If the former, just provide access to that command. If the latter, 
at least updating the Installation guide with information about how to 
change it would be a start. A Makefile target is not appropriate since a 
sysadmin may be building and installing Sage for many users; instead, you 
want a run-time solution. Maybe a command-line flag ("sage --color=...")? 
This would just pass the appropriate configuration option to IPython.

Also note http://trac.sagemath.org/ticket/14713, which updates the version 
of IPython in Sage. I'm guessing that the changes on that ticket will be 
available in the next beta release.

  John




On Sunday, March 9, 2014 4:00:36 PM UTC-7, Nitin Prasad wrote:
>
> Thank you very much for the assistance! 
>
> I'd like to try to add the ability to toggle colors in sage itself. As a 
> new user (and developer), I'd appreciate you input. Would a good way to go 
> about this be to add a target to the Makefile that creates a file like you 
> described, and then create a function in sage that will modify this upon 
> request? Also, when you mentioned 
>
> "It might not be a bad idea to have several of our own pre-defined color 
> schemes"
>
> I noticed that the preset values of Linux and LightBG basically correspond 
> to dark and light background respectively, so making our own color seems 
> would be a bit redundant. Did you have any other color schemes in mind? 
>
> Thanks, 
>
> Nitin Prasad
>
> On Sunday, March 9, 2014 1:46:59 PM UTC-5, John H Palmieri wrote:
>>
>> The colors are controlled by IPython. You should be able to create a file 
>> $HOME/.sage/ipython-0.12/profile_sage/ipython_config.py with the lines
>>
>> c = get_config()
>> # Set the color scheme (NoColor, Linux, or LightBG).
>> c.TerminalInteractiveShell.colors = 'Linux'
>>
>> for example, to change the color scheme. See 
>> http://ipython.org/ipython-doc/rel-1.0.0/config/old.html#color for some 
>> more information. You can also run "sage --ipython config -h" for a help 
>> message about configuring IPython.
>>
>> It might not be a bad idea to have several of our own pre-defined color 
>> schemes, with switches for the as Jan suggests...
>>
>>   John
>>
>>
>>
>>
>>
>> On Sunday, March 9, 2014 8:13:02 AM UTC-7, Jan Groenewald wrote:
>>>
>>> Would be nice to have a general theme toggle. background=dark or 
>>> background=light, like vim. Also, on systems with default black background 
>>> terminals, background=dark default would be nice.
>>>
>>> Regards,
>>> Jan
>>>
>>>
>>>
>>> On 9 March 2014 01:05, Nitin Prasad  wrote:
>>>
 Hi all,

 I've started using Sage (mostly from the command line) and I've noticed 
 by default a lot of the output text is colored blue. This is very 
 difficult 
 to see on the background of the terminal, so I was wondering if there was 
 any way to change this easily? There was one topic posted here a while ago 
 but that was about changing the color of the text on the notebook; I want 
 this for the command line.

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>>>
>>>
>>>
>>> -- 
>>>   .~. 
>>>   /V\ Jan Groenewald
>>>  /( )\www.aims.ac.za
>>>  ^^-^^ 
>>>  
>>

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