[sage-devel] Re: OpenSUSE source build failure
Yes, the output is; Using built-in specs. Target: i586-suse-linux Configured with: ../configure --enable-threads=posix --prefix=/usr -- with-local-prefix=/usr/local --infodir=/usr/share/info --mandir=/usr/ share/man --libdir=/usr/lib --libexecdir=/usr/lib --enable- languages=c,c++,objc,fortran,java,ada --enable-checking=release --with- gxx-include-dir=/usr/include/c++/4.1.0 --enable-ssp --disable-libssp -- enable-java-awt=gtk --enable-gtk-cairo --disable-libjava-multilib -- with-slibdir=/lib --with-system-zlib --enable-shared --enable- __cxa_atexit --enable-libstdcxx-allocator=new --without-system- libunwind --with-cpu=generic --host=i586-suse-linux Thread model: posix gcc version 4.1.0 (SUSE Linux) -- To post to this group, send an email to sage-devel@googlegroups.com To unsubscribe from this group, send an email to sage-devel+unsubscr...@googlegroups.com For more options, visit this group at http://groups.google.com/group/sage-devel URL: http://www.sagemath.org
[sage-devel] Re: OpenSUSE source build failure
Hello, I received the same error, relating to the installation of R; make[6]: Entering directory `/nano/scratch/camiles/binaries/sage-4.4.4/ spkg/build/r-2.10.1.p1/src/src/library/grDevices' Warning in solve.default(rgb) : unable to load shared library '/users/camiles/nano-scratch/binaries/ sage-4.4.4/spkg/build/r-2.10.1.p1/src/modules//lapack.so': /users/camiles/nano-scratch/binaries/sage-4.4.4/local/lib/ liblapack.so: undefined symbol: __powisf2 Error in solve.default(rgb) : lapack routines cannot be loaded Error: unable to load R code in package 'grDevices' Execution halted make[6]: *** [mklazy] Error 1 make[6]: Leaving directory `/nano/scratch/camiles/binaries/sage-4.4.4/ spkg/build/r-2.10.1.p1/src/src/library/grDevices' make[5]: *** [all] Error 2 make[5]: Leaving directory `/nano/scratch/camiles/binaries/sage-4.4.4/ spkg/build/r-2.10.1.p1/src/src/library/grDevices' make[4]: *** [R] Error 1 make[4]: Leaving directory `/nano/scratch/camiles/binaries/sage-4.4.4/ spkg/build/r-2.10.1.p1/src/src/library' make[3]: *** [R] Error 1 make[3]: Leaving directory `/nano/scratch/camiles/binaries/sage-4.4.4/ spkg/build/r-2.10.1.p1/src/src' make[2]: *** [R] Error 1 make[2]: Leaving directory `/nano/scratch/camiles/binaries/sage-4.4.4/ spkg/build/r-2.10.1.p1/src' Error building R. using gcc-4.3.3, however, I downloaded and compiled R successfully so I am wondering if I can replace the R source used in Sage with the source provided by the developers of R. Caleb -- To post to this group, send an email to sage-devel@googlegroups.com To unsubscribe from this group, send an email to sage-devel+unsubscr...@googlegroups.com For more options, visit this group at http://groups.google.com/group/sage-devel URL: http://www.sagemath.org
Re: [sage-devel] Re: Virtual machines -- I'm curious...
Hello, I am a software development intern at Inktank [1] in Los Angeles and I would also be interested in helping with this project, as well Salvus. I know that the automatic creation of virtual machine images is a problem that we had to tackle so there is a body of tools that could probably be modified for SAGE, although I personally did no development operations work myself, which may be helpful if one of the purposes of the server is to test clean installations of new releases. Also it might be nice, once the server is set up, to have something similar to [2] to show developers the build status of their incremental features on different platforms. - caleb [1] http://www.inktank.com/ [2] http://ceph.com/gitbuilder.cgi -- You received this message because you are subscribed to the Google Groups "sage-devel" group. To post to this group, send email to sage-devel@googlegroups.com. To unsubscribe from this group, send email to sage-devel+unsubscr...@googlegroups.com. Visit this group at http://groups.google.com/group/sage-devel?hl=en.
Re: [sage-devel] Re: Virtual machines -- I'm curious...
Hello, I am a software development intern at Inktank [1] in Los Angeles and I would also be interested in helping with this project, as well Salvus. I know that the automatic creation of virtual machine images is a problem that we had to tackle so there is a body of tools that could probably be modified for SAGE, although I personally did no development operations work myself, which may be helpful if one of the purposes of the server is to test clean installations of new releases. Also it might be nice, once the server is set up, to have something similar to [2] to show developers the build status of their incremental features on different platforms. - caleb [1] http://www.inktank.com/ [2] http://ceph.com/gitbuilder.cgi -- You received this message because you are subscribed to the Google Groups "sage-devel" group. To post to this group, send email to sage-devel@googlegroups.com. To unsubscribe from this group, send email to sage-devel+unsubscr...@googlegroups.com. Visit this group at http://groups.google.com/group/sage-devel?hl=en.
Re: [sage-devel] Salvus
Hello, I am currently an software development intern at Inktank [1] although my undergraduate background was in physics and mathematics, well as much as one can have a background in those fields as an undergraduate at a liberal arts college, the Salvus project sounds exactly what I wanted to develop for a few of my undergraduate professors as a thank you for all their help during my education, although my original intention was to use the parallel processing infrastructure of IPython [3]. Inktank is a member of both the Linux Foundation and the our parent company Dreamhost [2] is a member of the OpenStack Foundation so there is a lot of expert talent that I can help ping when it comes to cloud services development and all it entails, provisioning and deployment of virtual machines etc, so please I would love to throw my hands into the project now that I finally have some free time after graduation. - caleb [1] http://www.inktank.com/ [2] http://dreamhost.com/ [3] http://ipython.org/ipython-doc/dev/parallel/index.html -- You received this message because you are subscribed to the Google Groups "sage-devel" group. To post to this group, send email to sage-devel@googlegroups.com. To unsubscribe from this group, send email to sage-devel+unsubscr...@googlegroups.com. Visit this group at http://groups.google.com/group/sage-devel?hl=en.
[sage-devel] Re: OpenSUSE source build failure
Yes, I believe so too, however, the latest version of gcc 4.5.0 causes a build error with R, so I'm compiling and testing an intermediate version , gcc-4.3.5. On Mon, Jun 28, 2010 at 9:46 PM, Robert Bradshaw < rober...@math.washington.edu> wrote: > On Jun 28, 2010, at 9:12 AM, caleb wrote: > > I've attached the output of gcc -v to the discussion, but I notice now >> that it was mentioned in some earlier discussion that gcc 4.1.0 was >> blacklisted. The version of gcc is the only difference that I notice >> between the cluster that complies Sage flawlessly and this one. >> > > Well, the answer is to us a more recent gcc (as 4.1.0 clearly has a bug in > it). > > >> Caleb >> >> On Jun 27, 1:54 am, Robert Bradshaw >> wrote: >> >>> On Jun 27, 2010, at 1:40 AM, caleb miles wrote: >>> >>> Hello, >>>> >>> >>> I am attempting to compile SAGE 4.4.4 on an OpenSUSE cluster for >>>> local use, however, the build process fails while installing Cython, >>>> and I have attached the portion of install.log corresponding to the >>>> build process. >>>> >>> >>> Thanks. The key lines seem to be >>> >>> /nano/scratch/camiles/binaries/sage-4.4.4/spkg/build/cython-0.12.1/src/ >>> Cython/Compiler/Parsing.c: In function >>> ‘__pyx_f_6Cython_8Compiler_7Parsing_flatten_parallel_assignments’: >>> /nano/scratch/camiles/binaries/sage-4.4.4/spkg/build/cython-0.12.1/src/ >>> Cython/Compiler/Parsing.c:17225: internal compiler error: in >>> merge_alias_info, at tree-ssa-copy.c:235 >>> Please submit a full bug report, >>> with preprocessed source if appropriate. >>> See http://www.suse.de/feedback> for instructions. >>> error: command 'gcc' failed with exit status 1 >>> >>> i.e. a compiler error. Can you do gcc -v? >>> >>> The cluster has four processors, on the administration node I am >>>> working on of the type: >>>> >>> >>> processor : 0 >>>> vendor_id : GenuineIntel >>>> cpu family : 6 >>>> model : 15 >>>> model name : Intel(R) Xeon(R) CPU5140 @ 2.33GHz >>>> stepping: 6 >>>> cpu MHz : 2327.554 >>>> cache size : 4096 KB >>>> physical id : 0 >>>> siblings: 2 >>>> core id : 0 >>>> cpu cores : 2 >>>> fdiv_bug: no >>>> hlt_bug : no >>>> f00f_bug: no >>>> coma_bug: no >>>> fpu : yes >>>> fpu_exception : yes >>>> cpuid level : 10 >>>> wp : yes >>>> flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr >>>> pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm >>>> pbe nx lm constant_tsc pni monitor ds_cpl v >>>> mx est tm2 cx16 xtpr lahf_lm >>>> bogomips: 4658.82 >>>> >>> >>> further information about the computer >>>> >>> >>> Linux version 2.6.16.27-0.9-chpc (ge...@buildhost) (gcc version >>>> 4.1.0 (SUSE Linux)) #1 SMP Tue Mar 27 15:24:37 MDT 2007 >>>> >>> >>> I was able to compile SAGE version 3.4.3 on another similar cluster >>>> which is working wonderfully, so I was rather surprised by the >>>> failure in this case. Any help would be greatly appreciated. >>>> >>> >>> Sincerely, >>>> >>> >>> Caleb Miles >>>> -- >>>> Cahn's Axiom: >>>>When all else fails, read the instructions. >>>> >>> >>> -- >>>> To post to this group, send an email to sage-devel@googlegroups.com >>>> To unsubscribe from this group, send an email to >>>> sage-devel+unsubscr...@googlegroups.com >>>> For more options, visit this group athttp:// >>>> groups.google.com/group/sage-devel >>>> >>>> URL:http://www.sagemath.org >>>> >>>> >>> > -- To post to this group, send an email to sage-devel@googlegroups.com To unsubscribe from this group, send an email to sage-devel+unsubscr...@googlegroups.com For more options, visit this group at http://groups.google.com/group/sage-devel URL: http://www.sagemath.org
Re: [sage-devel] Error Building Sage With WSL
The problem solved itself, sage is now building correctly. I think rebooting my computer is probably what fixed things. Thank you for all your help! On Tuesday, January 28, 2025 at 6:41:09 AM UTC-7 Caleb Van't Land wrote: > That worked and I was able to successfully build sage. > Unfortunately it started failing again once I pulled the latest version > (10.6.beta5). > > Now ./configure is failing with the following error: > configure: error: found a good version of tar in /bin//tar, but it's not > the first "tar" program in your PATH > > I have tried running 'make distclean', it does not appear to make a > difference. > > Googling the error I found the following issue, which may be relevant: > https://github.com/sagemath/sage/issues/38856 > > I have attached config.log. > > On Sunday, January 26, 2025 at 9:56:35 PM UTC-7 dim...@gmail.com wrote: > >> your config.log says you have leftovers from the previous attempt to >> install, which was unsuccessful due to conda issues. >> >> Please clean up by running >> >> make distclean >> >> and then start again with >> >> ./bootstrap >> ./configure >> make >> >> >> On 26 January 2025 17:17:11 GMT-06:00, Caleb Van't Land < >> caleb.v...@gmail.com> wrote: >> >>> I was not trying to use conda, but I had previously used conda to >>> install the user version of sage. I think you are correct that this was >>> part of the problem, conda was active and parts of the PATH were pointing >>> to locations associated with conda. >>> >>> I have now deactivated conda and I ran the following command: >>> $ export PATH=/usr/sbin/:/sbin/:/bin/:/usr/lib/wsl/lib/ >>> as suggested in step 8 of: https://github.com/sagemath/sage/#readme >>> >>> Sage still does not build correctly. I think it's getting farther, Gap >>> looks to have built correctly, but it's now failing to build lcalc-2.0.5. >>> >>> I have attached the relevant log files. >>> >>> Thank you for your help, >>> Caleb >>> >>> On Friday, January 24, 2025 at 6:48:31 AM UTC-7 dim...@gmail.com wrote: >>> >>>> How are you trying to install Sage. Using conda, or not? >>>> >>>> If not, them you need to make sure your conda libraries are not >>>> interfering. >>>> So you might need to deactivate the conda environments and make sure >>>> PATH etc are not pointing anywhere >>>> where parts of conda are installed. >>>> >>>> On Thu, Jan 23, 2025 at 1:18 PM Caleb Van't Land >>>> wrote: >>>> > >>>> > Hello, >>>> > >>>> > I'm attempting to build sage on my machine using WSL. My computer is >>>> running Windows 10, build 19045.5371. >>>> > >>>> > I have attempted to follow the instructions at >>>> https://github.com/sagemath/sage/#readme, but the 'make' command is >>>> failing when it tries to build gap-4.13.1. I have attached the two logs >>>> files indicated by the error message. >>>> > >>>> > I have tried running 'make distclean' then trying to build sage >>>> again. It does not appear to make any difference. >>>> > >>>> > Thanks in advance for any help you can provide, >>>> > Caleb >>>> > >>>> > -- >>>> > You received this message because you are subscribed to the Google >>>> Groups "sage-devel" group. >>>> > To unsubscribe from this group and stop receiving emails from it, >>>> send an email to sage-devel+...@googlegroups.com. >>>> > To view this discussion visit >>>> https://groups.google.com/d/msgid/sage-devel/4ce82a2b-a516-4d4e-8790-de0e2e6ef526n%40googlegroups.com. >>>> >>>> >>>> >>> -- You received this message because you are subscribed to the Google Groups "sage-devel" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-devel+unsubscr...@googlegroups.com. To view this discussion visit https://groups.google.com/d/msgid/sage-devel/c5448640-c0a4-4a45-a707-20a0ccf537a4n%40googlegroups.com.
Re: [sage-devel] Error Building Sage With WSL
That worked and I was able to successfully build sage. Unfortunately it started failing again once I pulled the latest version (10.6.beta5). Now ./configure is failing with the following error: configure: error: found a good version of tar in /bin//tar, but it's not the first "tar" program in your PATH I have tried running 'make distclean', it does not appear to make a difference. Googling the error I found the following issue, which may be relevant: https://github.com/sagemath/sage/issues/38856 I have attached config.log. On Sunday, January 26, 2025 at 9:56:35 PM UTC-7 dim...@gmail.com wrote: > your config.log says you have leftovers from the previous attempt to > install, which was unsuccessful due to conda issues. > > Please clean up by running > > make distclean > > and then start again with > > ./bootstrap > ./configure > make > > > On 26 January 2025 17:17:11 GMT-06:00, Caleb Van't Land < > caleb.v...@gmail.com> wrote: > >> I was not trying to use conda, but I had previously used conda to install >> the user version of sage. I think you are correct that this was part of the >> problem, conda was active and parts of the PATH were pointing to locations >> associated with conda. >> >> I have now deactivated conda and I ran the following command: >> $ export PATH=/usr/sbin/:/sbin/:/bin/:/usr/lib/wsl/lib/ >> as suggested in step 8 of: https://github.com/sagemath/sage/#readme >> >> Sage still does not build correctly. I think it's getting farther, Gap >> looks to have built correctly, but it's now failing to build lcalc-2.0.5. >> >> I have attached the relevant log files. >> >> Thank you for your help, >> Caleb >> >> On Friday, January 24, 2025 at 6:48:31 AM UTC-7 dim...@gmail.com wrote: >> >>> How are you trying to install Sage. Using conda, or not? >>> >>> If not, them you need to make sure your conda libraries are not >>> interfering. >>> So you might need to deactivate the conda environments and make sure >>> PATH etc are not pointing anywhere >>> where parts of conda are installed. >>> >>> On Thu, Jan 23, 2025 at 1:18 PM Caleb Van't Land >>> wrote: >>> > >>> > Hello, >>> > >>> > I'm attempting to build sage on my machine using WSL. My computer is >>> running Windows 10, build 19045.5371. >>> > >>> > I have attempted to follow the instructions at >>> https://github.com/sagemath/sage/#readme, but the 'make' command is >>> failing when it tries to build gap-4.13.1. I have attached the two logs >>> files indicated by the error message. >>> > >>> > I have tried running 'make distclean' then trying to build sage again. >>> It does not appear to make any difference. >>> > >>> > Thanks in advance for any help you can provide, >>> > Caleb >>> > >>> > -- >>> > You received this message because you are subscribed to the Google >>> Groups "sage-devel" group. >>> > To unsubscribe from this group and stop receiving emails from it, send >>> an email to sage-devel+...@googlegroups.com. >>> > To view this discussion visit >>> https://groups.google.com/d/msgid/sage-devel/4ce82a2b-a516-4d4e-8790-de0e2e6ef526n%40googlegroups.com. >>> >>> >>> >> -- You received this message because you are subscribed to the Google Groups "sage-devel" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-devel+unsubscr...@googlegroups.com. To view this discussion visit https://groups.google.com/d/msgid/sage-devel/868f86f8-abb8-4407-97ac-e364c26923e2n%40googlegroups.com. This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. It was created by Sage configure 10.6.beta5, which was generated by GNU Autoconf 2.69. Invocation command line was $ ./configure ## - ## ## Platform. ## ## - ## hostname = DESKTOP-MTPH8O8 uname -m = x86_64 uname -r = 5.10.16.3-microsoft-standard-WSL2 uname -s = Linux uname -v = #1 SMP Fri Apr 2 22:23:49 UTC 2021 /usr/bin/uname -p = x86_64 /bin/uname -X = unknown /bin/arch = x86_64 /usr/bin/arch -k = unknown /usr/convex/getsysinfo = unknown /usr/bin/hostinfo = unknown /bin/machine = unknown /usr/bin/oslevel = unknown /bin/universe = unknown PATH: /usr/sbin/ PATH: /sbin/ PATH: /bin/ PATH: /usr/lib/wsl/lib/ ## --- ## ##
