[Rpy] SF.net SVN: rpy: [489] trunk/rpy/rpy.py
Revision: 489
http://rpy.svn.sourceforge.net/rpy/?rev=489&view=rev
Author: warnes
Date: 2008-04-16 07:19:47 -0700 (Wed, 16 Apr 2008)
Log Message:
---
Fix R.__repr__() bug.
Modified Paths:
--
trunk/rpy/rpy.py
Modified: trunk/rpy/rpy.py
===
--- trunk/rpy/rpy.py2008-04-12 09:04:32 UTC (rev 488)
+++ trunk/rpy/rpy.py2008-04-16 14:19:47 UTC (rev 489)
@@ -332,7 +332,7 @@
self.print_(helpobj)
def __repr__(self):
-Rver = self.__getitem__('R_version_string')
+Rver = self.__getitem__('R.version.string')
return "RPy version %s [%s]" % (rpy_version, Rver)
def __str__(self):
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[Rpy] [ rpy-Bugs-1931617 ] module _rpy2062 not included
Bugs item #1931617, was opened at 2008-04-01 16:23 Message generated for change (Comment added) made by warnes You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=453021&aid=1931617&group_id=48422 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. >Category: Build Group: None >Status: Closed >Resolution: Fixed Priority: 5 Private: No Submitted By: Nobody/Anonymous (nobody) Assigned to: Nobody/Anonymous (nobody) Summary: module _rpy2062 not included Initial Comment: Module _rpy2062 did not seem to be included in the download package rpy-1.0.1-R-1.3.0-to-2.6.1-Numpy-win32-py2.5.exe -- >Comment By: Gregory Warnes (warnes) Date: 2008-04-16 10:16 Message: Logged In: YES user_id=9316 Originator: NO Fixed in 1.0.2 -- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=453021&aid=1931617&group_id=48422 - This SF.net email is sponsored by the 2008 JavaOne(SM) Conference Don't miss this year's exciting event. There's still time to save $100. Use priority code J8TL2D2. http://ad.doubleclick.net/clk;198757673;13503038;p?http://java.sun.com/javaone ___ rpy-list mailing list rpy-list@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/rpy-list
[Rpy] [ rpy-Bugs-1908350 ] the R.__repr__ method is broken
Bugs item #1908350, was opened at 2008-03-05 17:07
Message generated for change (Comment added) made by warnes
You can respond by visiting:
https://sourceforge.net/tracker/?func=detail&atid=453021&aid=1908350&group_id=48422
Please note that this message will contain a full copy of the comment thread,
including the initial issue submission, for this request,
not just the latest update.
Category: None
Group: rpy
Status: Open
>Resolution: Fixed
Priority: 5
Private: No
Submitted By: Nobody/Anonymous (nobody)
>Assigned to: Gregory Warnes (warnes)
Summary: the R.__repr__ method is broken
Initial Comment:
$ python
Python 2.5.1 (r251:54863, Oct 5 2007, 13:36:32)
[GCC 4.1.3 20070929 (prerelease) (Ubuntu 4.1.2-16ubuntu2)] on linux2
Type "help", "copyright", "credits" or "license" for more information.
>>> import rpy
>>> rpy.r
Traceback (most recent call last):
File "", line 1, in
File "rpy.py", line 323, in __repr__
Rver = self.__getitem__('R_version_string')
File "rpy.py", line 306, in __getitem__
obj = self.__dict__[name] = self.__dict__.get(name, self.get(name))
rpy.RPy_RException: Error in get(x, envir, mode, inherits) : variable
"R_version_string" was not found
Note: I used the 1.0.1 release of rpy.
--
>Comment By: Gregory Warnes (warnes)
Date: 2008-04-16 10:57
Message:
Logged In: YES
user_id=9316
Originator: NO
Fixed in svn, will be part of next release.
--
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[Rpy] SF.net SVN: rpy: [490] branches/rpy_nextgen/rpy/rinterface/tests/ test_SexpVector.py
Revision: 490
http://rpy.svn.sourceforge.net/rpy/?rev=490&view=rev
Author: lgautier
Date: 2008-04-16 12:14:12 -0700 (Wed, 16 Apr 2008)
Log Message:
---
code layout
Modified Paths:
--
branches/rpy_nextgen/rpy/rinterface/tests/test_SexpVector.py
Modified: branches/rpy_nextgen/rpy/rinterface/tests/test_SexpVector.py
===
--- branches/rpy_nextgen/rpy/rinterface/tests/test_SexpVector.py
2008-04-16 14:19:47 UTC (rev 489)
+++ branches/rpy_nextgen/rpy/rinterface/tests/test_SexpVector.py
2008-04-16 19:14:12 UTC (rev 490)
@@ -70,9 +70,12 @@
self.assertTrue(ok)
def testNewVector(self):
-sexp_char = rinterface.SexpVector(["abc", ], rinterface.STRSXP)
-sexp_int = rinterface.SexpVector([1, ], rinterface.INTSXP)
-sexp = rinterface.SexpVector([sexp_char, sexp_int], rinterface.VECSXP)
+sexp_char = rinterface.SexpVector(["abc", ],
+ rinterface.STRSXP)
+sexp_int = rinterface.SexpVector([1, ],
+ rinterface.INTSXP)
+sexp = rinterface.SexpVector([sexp_char, sexp_int],
+ rinterface.VECSXP)
isList = rinterface.globalEnv.get("is.list")
ok = isList(sexp)[0]
self.assertTrue(ok)
@@ -111,12 +114,14 @@
c_R = rinterface.globalEnv.get("c")
myVec = c_R(rinterface.SexpVector([0, 1, 2, 3, 4, 5],
rinterface.INTSXP))
#import pdb; pdb.set_trace()
-self.assertRaises(ValueError, myVec.__setitem__, 0,
rinterface.SexpVector(["a", ], rinterface.STRSXP))
+self.assertRaises(ValueError, myVec.__setitem__, 0,
+ rinterface.SexpVector(["a", ], rinterface.STRSXP))
def testAssignItemOutOfBound(self):
c_R = rinterface.globalEnv.get("c")
myVec = c_R(rinterface.SexpVector([0, 1, 2, 3, 4, 5],
rinterface.INTSXP))
-self.assertRaises(IndexError, myVec.__setitem__, 10,
rinterface.SexpVector([1, ], rinterface.INTSXP))
+self.assertRaises(IndexError, myVec.__setitem__, 10,
+ rinterface.SexpVector([1, ], rinterface.INTSXP))
def testAssignItemInt(self):
c_R = rinterface.globalEnv.get("c")
@@ -129,7 +134,8 @@
def testAssignItemReal(self):
c_R = rinterface.globalEnv.get("c")
-myVec = c_R(rinterface.SexpVector([0.0, 1.0, 2.0, 3.0, 4.0, 5.0],
rinterface.REALSXP))
+myVec = c_R(rinterface.SexpVector([0.0, 1.0, 2.0, 3.0, 4.0, 5.0],
+ rinterface.REALSXP))
myVec[0] = rinterface.SexpVector([100.0, ], rinterface.REALSXP)
self.assertTrue(floatEqual(myVec[0], 100.0))
@@ -138,7 +144,8 @@
def testAssignItemLogical(self):
c_R = rinterface.globalEnv.get("c")
-myVec = c_R(rinterface.SexpVector([True, False, True, True, False],
rinterface.LGLSXP))
+myVec = c_R(rinterface.SexpVector([True, False, True, True, False],
+ rinterface.LGLSXP))
myVec[0] = rinterface.SexpVector([False, ], rinterface.LGLSXP)
self.assertFalse(myVec[0])
@@ -147,7 +154,8 @@
def testAssignItemComplex(self):
c_R = rinterface.globalEnv.get("c")
-myVec = c_R(rinterface.SexpVector([1.0+2.0j, 2.0+2.0j, 3.0+2.0j,
4.0+2.0j, 5.0+2.0j], rinterface.CPLXSXP))
+myVec = c_R(rinterface.SexpVector([1.0+2.0j, 2.0+2.0j, 3.0+2.0j,
4.0+2.0j, 5.0+2.0j],
+ rinterface.CPLXSXP))
myVec[0] = rinterface.SexpVector([100.0+200.0j, ], rinterface.CPLXSXP)
self.assertTrue(floatEqual(myVec[0].real, 100.0))
self.assertTrue(floatEqual(myVec[0].imag, 200.0))
@@ -159,21 +167,24 @@
def testAssignItemList(self):
myVec = rinterface.SexpVector([rinterface.SexpVector(["a", ],
rinterface.STRSXP),
rinterface.SexpVector([1, ],
rinterface.INTSXP),
- rinterface.SexpVector([3, ],
rinterface.INTSXP)], rinterface.VECSXP)
+ rinterface.SexpVector([3, ],
rinterface.INTSXP)],
+ rinterface.VECSXP)
-myVec[0] = rinterface.SexpVector([rinterface.SexpVector([100.0, ],
rinterface.REALSXP), ], rinterface.VECSXP)
+myVec[0] = rinterface.SexpVector([rinterface.SexpVector([100.0, ],
rinterface.REALSXP), ],
+ rinterface.VECSXP)
self.assertTrue(floatEqual(myVec[0][0][0], 100.0))
-myVec[2] = rinterface.SexpVector([rinterface.SexpVector(["a", ],
rinterface.STRSXP), ], rinterface.VECSXP)
+myVec[2] = rinterface.SexpVector([rinterface.SexpVector(["a", ],
rinterface.STRSXP), ],
+ rinterface.VECSXP)
[Rpy] SF.net SVN: rpy: [491] branches/rpy_nextgen/demos
Revision: 491
http://rpy.svn.sourceforge.net/rpy/?rev=491&view=rev
Author: lgautier
Date: 2008-04-16 12:16:28 -0700 (Wed, 16 Apr 2008)
Log Message:
---
Toy R GUI as an example (might be worth it making a real GUI).
Modified Paths:
--
branches/rpy_nextgen/demos/radmin.py
Added Paths:
---
branches/rpy_nextgen/demos/rpy2_logo.png
Modified: branches/rpy_nextgen/demos/radmin.py
===
--- branches/rpy_nextgen/demos/radmin.py2008-04-16 19:14:12 UTC (rev
490)
+++ branches/rpy_nextgen/demos/radmin.py2008-04-16 19:16:28 UTC (rev
491)
@@ -2,17 +2,19 @@
pygtk.require('2.0')
import gtk
import rpy2.robjects as robjects
+import itertools
+import gobject
-
-
class LibraryPanel(gtk.VBox):
cell = gtk.CellRendererText()
cell.set_property('cell-background', 'black')
cell.set_property('foreground', 'white')
-
-def __init__(self):
+PACKAGE_I = 0
+
+def __init__(self, console=None):
super(LibraryPanel, self).__init__()
+self._console = console
self._table = gtk.ListStore(str, str, str)
self.updateInstalledLibraries()
self._treeView = gtk.TreeView(model = self._table)
@@ -30,10 +32,13 @@
sbox = gtk.HBox(homogeneous=False, spacing=0)
sbox.show()
+slabel = gtk.Label("Search:")
+slabel.show()
+sbox.pack_start(slabel, True, True, 0)
self.sentry = gtk.Entry()
self.sentry.show()
sbox.add(self.sentry)
-sbutton = gtk.Button("Search")
+sbutton = gtk.Button("Refresh")
sbutton.connect("clicked", self.searchAction, "search")
sbutton.show()
sbox.add(sbutton)
@@ -44,6 +49,14 @@
s_window.show()
s_window.add(self._treeView)
self.add(s_window)
+
+lbox = gtk.HBox(homogeneous=False, spacing=0)
+lbox.show()
+lbutton = gtk.Button("Load")
+lbutton.connect("clicked", self.loadAction, "load")
+lbutton.show()
+lbox.add(lbutton)
+self.pack_start(lbox, expand=False, fill=False, padding=0)
def updateInstalledLibraries(self):
self._table.clear()
@@ -76,9 +89,31 @@
for r in toremove:
self._table.remove(self._table.get_iter(r))
+def loadAction(self, widget, data=None):
+# Get the selection in the gtk.TreeView
+ selection = self._treeView.get_selection()
+ # Get the selection iter
+ model, selection_iter = selection.get_selected()
+if selection_iter:
+packName = self._table.get_value(selection_iter,
+self.PACKAGE_I)
+self._console.append('library("%s")\n' %packName)
+
+tmp = robjects.baseNameSpaceEnv["fifo"]("")
+robjects.baseNameSpaceEnv["sink"](tmp)
+
+robjects.baseNameSpaceEnv["library"](packName)
+out = robjects.baseNameSpaceEnv["readLines"](tmp)
+for line in out:
+self._console.append(str(line)+"\n")
+robjects.r.close(tmp)
+self._console.append("> ")
+
class VignetteExplorer(gtk.VBox):
+PACKAGE_I = 0
+ITEM_I = 1
def __init__(self):
super(VignetteExplorer, self).__init__()
self._table = gtk.ListStore(str, str, str)
@@ -95,6 +130,7 @@
col.pack_start(cr, True)
self._valueCells.append(cr)
col.set_attributes(cr, text=col_i)
+
sbox = gtk.HBox(homogeneous=False, spacing=0)
#sbox.show()
sentry = gtk.Entry()
@@ -110,6 +146,13 @@
s_window.show()
s_window.add(self._treeView)
self.add(s_window)
+vbox = gtk.HBox(homogeneous=False, spacing=0)
+vbox.show()
+vbutton = gtk.Button("View")
+vbutton.connect("clicked", self.viewAction, "view")
+vbutton.show()
+vbox.add(vbutton)
+self.pack_start(vbox, expand=False, fill=False, padding=0)
def updateKnownVignettes(self):
self._table.clear()
@@ -126,6 +169,76 @@
row.append(pack)
self._table.append(row)
+def viewAction(self, widget, data=None):
+# Get the selection in the gtk.TreeView
+ selection = self._treeView.get_selection()
+ # Get the selection iter
+ model, selection_iter = selection.get_selected()
+if selection_iter:
+packName = self._table.get_value(selection_iter,
+ self.PACKAGE_I)
+vigName = self._table.get_value(selection_iter,
+self.ITEM_I)
+robjects.r.vignette(vigName, package = packName)
+
+
+class GraphicalDeviceExplorer(gtk.VBox):
+
+def __init__(self):
+super(GraphicalDeviceExplorer, self).__init__()
+self._table = gtk.Lis
[Rpy] installing rpy on a max running osx10.4
Can anybody offer me any advice on installing rpy on a max running osx10.4. I'm generally using python 2.5 but don't mind using 10.4 if necessary. Thanks Mark - This SF.net email is sponsored by the 2008 JavaOne(SM) Conference Don't miss this year's exciting event. There's still time to save $100. Use priority code J8TL2D2. http://ad.doubleclick.net/clk;198757673;13503038;p?http://java.sun.com/javaone ___ rpy-list mailing list rpy-list@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/rpy-list
Re: [Rpy] installing rpy on a max running osx10.4
Hi Mark I do my rpy development on OSX 10.4, using python 2.4.2. To install rpy, just download and unpack the source .tar.gz file, then run python setup.py build sudo python setup.py install you'll probably want to ensure that Numpy is installed before you do this so you get better support for matrix objects on the python side. -G On Apr 16, 2008, at 5:35PM , Mark Thomas wrote: Can anybody offer me any advice on installing rpy on a max running osx10.4. I'm generally using python 2.5 but don't mind using 10.4 if necessary. Thanks Mark -- --- This SF.net email is sponsored by the 2008 JavaOne(SM) Conference Don't miss this year's exciting event. There's still time to save $100. Use priority code J8TL2D2. http://ad.doubleclick.net/clk;198757673;13503038;p?http:// java.sun.com/javaone ___ rpy-list mailing list rpy-list@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/rpy-list - This SF.net email is sponsored by the 2008 JavaOne(SM) Conference Don't miss this year's exciting event. There's still time to save $100. Use priority code J8TL2D2. http://ad.doubleclick.net/clk;198757673;13503038;p?http://java.sun.com/javaone___ rpy-list mailing list rpy-list@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/rpy-list
