[R-pkg-devel] New Package olr 4 NOTES
Hi All,
This is the first time I am trying to upload a package. It is fun learning this
stuff.
Thank you all for kindly looking at the NOTES.
This is the log I recevied from CRAN volunteers:
https://win-builder.r-project.org/incoming_pretest/olr_1.0.0.2000_20191129_024844/Windows/00check.log
(I was wondering how to reproduce that log. I have run other things like
devtools::check())
The package is here: https://github.com/MatHatter/olr_r/tree/master/Rstuff
I will address every problem below:
1. OK. Not misspelled:
Possibly mis-spelled words in DESCRIPTION:
olr (8:18, 9:20)
2. FIXED thisThe Description field should not start with the package name,
'This package' or similar.
3. FIXED thisThe Description field contains
https://pypi.org/project/olr/.
Please enclose URLs in angle brackets (<...>).
4. Don't know how to fix this, unless it is not anything.
The build time stamp is missing.
5. First I took these files out of the folder completely, but then I thought
that it might be needed for something and .Rhistory probably will be there no
matter what so I used the function
> usethis::use_build_ignore(c(".Rproj.user", ".gitignore", ".Rhistory"))✔
> Setting active project to 'C:/Rstuff/olr'✔ Adding '^\\.gitignore$',
> '^\\.Rhistory$' to '.Rbuildignore'
but as you see .Rproj.user was already in my .Rbuildignore so I don't know if
this is going to work.* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
.Rhistory
.gitignore
.Rproj.user
These were most likely included in error. See section 'Package
structure' in the 'Writing R Extensions' manual.
6. Lastly, I do not know how to fix this. I used the use_gpl3_license() I
believe.
* checking top-level files ... NOTE
Non-standard files/directories found at top level:
'LICENSE.md' 'olr.Rproj'
FYI,This is what my .Rbuildignore file looks
like^olr\.Rproj$^\.Rproj\.user$^LICENSE\.md$^\.gitignore$^\.Rhistory$
Thank you all so much.
From,
Mathew Fok
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Re: [R-pkg-devel] New Package olr 4 NOTES
Hi,
Thank you. I am wondering why the log would output .Rproj.user when it was
already in the .Rignorefile. Hope the .Rignore file is correct anyways as I
have mentioned below.
Thanks,
Mathew
Sent from Yahoo Mail for iPhone
On Wednesday, December 4, 2019, 2:11 PM, Duncan Murdoch
wrote:
On 04/12/2019 1:02 p.m., Mat Fok via R-package-devel wrote:
> Hi All,
> This is the first time I am trying to upload a package. It is fun learning
> this stuff.
> Thank you all for kindly looking at the NOTES.
> This is the log I recevied from CRAN volunteers:
> https://win-builder.r-project.org/incoming_pretest/olr_1.0.0.2000_20191129_024844/Windows/00check.log
> (I was wondering how to reproduce that log. I have run other things like
> devtools::check())
>
> The package is here: https://github.com/MatHatter/olr_r/tree/master/Rstuff
>
> I will address every problem below:
> 1. OK. Not misspelled:
> Possibly mis-spelled words in DESCRIPTION:
> olr (8:18, 9:20)
> 2. FIXED thisThe Description field should not start with the package name,
> 'This package' or similar.
> 3. FIXED thisThe Description field contains
> https://pypi.org/project/olr/.
> Please enclose URLs in angle brackets (<...>).
> 4. Don't know how to fix this, unless it is not anything.
> The build time stamp is missing.
That's a sign that you didn't build the package using "R CMD build" at
the command line (or one of the R functions that calls it). Don't use
tar directly to create it, let R do it (because adding a timestamp is
not the only thing it does).
If you used a devtools function to build the tarball, then you probably
did something wrong, but it's hard to say what without seeing the
command you used. Or maybe devtools has a bug, but it's pretty widely
used, so I doubt that.
> 5. First I took these files out of the folder completely, but then I thought
> that it might be needed for something and .Rhistory probably will be there no
> matter what so I used the function
>> usethis::use_build_ignore(c(".Rproj.user", ".gitignore", ".Rhistory"))✔
>> Setting active project to 'C:/Rstuff/olr'✔ Adding '^\\.gitignore$',
>> '^\\.Rhistory$' to '.Rbuildignore'
> but as you see .Rproj.user was already in my .Rbuildignore so I don't know if
> this is going to work.* checking for hidden files and directories ... NOTE
> Found the following hidden files and directories:
> .Rhistory
> .gitignore
> .Rproj.user
> These were most likely included in error. See section 'Package
> structure' in the 'Writing R Extensions' manual.
If you had .Rbuildignore set to ignore them, then R would not put them
in the tarball.
Duncan Murdoch
>
> 6. Lastly, I do not know how to fix this. I used the use_gpl3_license() I
> believe.
> * checking top-level files ... NOTE
> Non-standard files/directories found at top level:
> 'LICENSE.md' 'olr.Rproj'
> FYI,This is what my .Rbuildignore file looks
> like^olr\.Rproj$^\.Rproj\.user$^LICENSE\.md$^\.gitignore$^\.Rhistory$
> Thank you all so much.
> From,
> Mathew Fok
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Re: [R-pkg-devel] New Package olr 4 NOTES
I meant .Rbuildignore. Sent from Yahoo Mail for iPhone On Thursday, December 5, 2019, 3:19 AM, Martin Maechler wrote: >>>>> Mat Fok via R-package-devel >>>>> on Wed, 4 Dec 2019 22:25:47 + writes: > Hi, > Thank you. I am wondering why the log would output .Rproj.user when it was already in the .Rignorefile. Hope the .Rignore file is correct anyways as I have mentioned below. If you really use .Rignore then no wonder you have problems. The correct file name is .Rbuildignore Martin > Thanks, > Mathew [[alternative HTML version deleted]] __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel
Re: [R-pkg-devel] New Package olr 4 NOTES
Hi Max,
Following your comment about, ".Rbuildignore is used by R CMD build to exclude
some files from the bundled package. If you created the tar.gz file manually,
then .Rbuildignore was, well, ignored. And .Rproj.user would then have been
included in the tarball."
I assume that if I create the tar.gz file "automatically" through R and not
7zip, then the .Rbuildignore is not ignored and I won't have the problem of
.Rproj.user being included in the tarball:
devtools::build(pkg = "C:/Rstuff/olr", path = NULL, binary = FALSE, vignettes =
TRUE, manual = FALSE, args = NULL, quiet = FALSE)
√ checking for file 'C:\Rstuff\olr/DESCRIPTION' ...- preparing 'olr':√
checking DESCRIPTION meta-information ...- checking for LF line-endings in
source and make files and shell scripts- checking for empty or unneeded
directories- building 'olr_1.0.0.2000.tar.gz' [1]
"C:/Rstuff/olr_1.0.0.2000.tar.gz"
Thank you very much!
On Thursday, December 5, 2019, 9:25 AM, Max Turgeon
wrote:
#yiv7416260906 -- P {margin-top:0;margin-bottom:0;}#yiv7416260906
.Rbuildignore is used by R CMD build to exclude some files from the bundled
package. If you created the tar.gz file manually, then .Rbuildignore was, well,
ignored. And .Rproj.user would then have been included in the tarball.
Max Turgeon
Assistant ProfessorDepartment of Statistics
Department of Computer Science
University of Manitobamaxturgeon.ca
From: R-package-devel on behalf of Mat
Fok via R-package-devel
Sent: December 5, 2019 8:17 AM
To: Martin Maechler
Cc: R-package-devel
Subject: Re: [R-pkg-devel] New Package olr 4 NOTES I meant .Rbuildignore.
Sent from Yahoo Mail for iPhone
On Thursday, December 5, 2019, 3:19 AM, Martin Maechler
wrote:
>>>>> Mat Fok via R-package-devel
>>>>> on Wed, 4 Dec 2019 22:25:47 + writes:
> Hi,
> Thank you. I am wondering why the log would output .Rproj.user when it
was already in the .Rignorefile. Hope the .Rignore file is correct anyways as I
have mentioned below.
If you really use .Rignore then no wonder you have problems.
The correct file name is .Rbuildignore
Martin
> Thanks,
> Mathew
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[R-pkg-devel] Update on olr package
Hi, MatHatter/olr_r Thank you all for helping! It has lead me in the right direction. I have resolved a lot of the previous .Rbuildignore problems, because I have been using R CMD to build the tarball or in other words, I have been using the batch files to run the build and checks. R CMD -as--cran These are the two problems I am seeing now: The Description field contains https://pypi.org/project/olr/.Please enclose URLs in angle brackets (<...>). However, I have already put the brackets there. Second issue: * checking PDF version of manual ... WARNINGLaTeX errors when creating PDF version.This typically indicates Rd problems.* checking PDF version of manual without hyperrefs or index ... ERRORRe-running with no redirection of stdout/stderr.* DONEStatus: 1 ERROR, 1 WARNING, 1 NOTE HOWEVER, when I do R CMD -no--manual I don't have any issues. Can I make an override to CRAN or how do I address these issues? Thank you! [[alternative HTML version deleted]] __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel
