[R-pkg-devel] System requirements of a vignette engine
Dear All, inspired by Karl Broman`s reader on using 'knitr' with 'asciidoc' (http://kbroman.org/knitr_knutshell/pages/asciidoc.html), I wrote package rasciidoc some time ago. It is just a wrapper to knitr and asciidoc, which is a system requirement for the package. CRAN does not need to have asciidoc installed to build and check the package, although the package is pretty useless without asciidoc. Now I have added a vignette engine to write vignettes using rasciidoc. And here is the problem: this engine obviously needs asciidoc to be installed, which is not the case on CRAN, so the package with the vignette engine fails the autocheck. Writing vignettes that cannot go to CRAN seems pretty pointless. Does that mean that writing vignette engines that do not rely on pandoc or LaTeX is pointless? Or is it possible to get system requirements for vignette engines installed on CRAN? Thanks for your answers, Dominik __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel
Re: [R-pkg-devel] System requirements of a vignette engine
Pls write to c...@r-project.org. Best, Uwe Ligges On 30.03.2020 01:09, fvaf...@mailbox.org wrote: Dear All, inspired by Karl Broman`s reader on using 'knitr' with 'asciidoc' (http://kbroman.org/knitr_knutshell/pages/asciidoc.html), I wrote package rasciidoc some time ago. It is just a wrapper to knitr and asciidoc, which is a system requirement for the package. CRAN does not need to have asciidoc installed to build and check the package, although the package is pretty useless without asciidoc. Now I have added a vignette engine to write vignettes using rasciidoc. And here is the problem: this engine obviously needs asciidoc to be installed, which is not the case on CRAN, so the package with the vignette engine fails the autocheck. Writing vignettes that cannot go to CRAN seems pretty pointless. Does that mean that writing vignette engines that do not rely on pandoc or LaTeX is pointless? Or is it possible to get system requirements for vignette engines installed on CRAN? Thanks for your answers, Dominik __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel # __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel
[R-pkg-devel] Help with Error Messages
Hi, I am submitting a package to CRAN for the first time and I am not sure what the following error means and how to solve it: https://win-builder.r-project.org/incoming_pretest/MetaClean_0.1.0_20200330_150936/Windows/00install.out Could someone please help me with this? Thank you, Kelsey Chetnik [[alternative HTML version deleted]] __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel
Re: [R-pkg-devel] Help with Error Messages
On Mon, 2020-03-30 at 10:18 -0400, Kelsey Chetnik wrote: > Hi, > > I am submitting a package to CRAN for the first time and I am not > sure what > the following error means and how to solve it: > https://win-builder.r-project.org/incoming_pretest/MetaClean_0.1.0_20200330_150936/Windows/00install.out > > Could someone please help me with this? > The link will go away, so here is the error: ** byte-compile and prepare package for lazy loading Error: .onLoad failed in loadNamespace() for 'S4Vectors', details: call: validObject(.Object) error: invalid class "LLint" object: superclass "integer_OR_LLint" not defined in the environment of the object's class Execution halted ERROR: lazy loading failed for package 'MetaClean' Does your package compile and run locally? Is the 'S4Vectors' package properly listed in 'Imports' ? This error might be related to S4Vectors, and unrelated to you directly. Check on other Winbuilder architectures, R-Hub, etc, and see if the error is replicated there. Regards, Brian __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel
[R-pkg-devel] Error creating union class: object ‘.__C__compMatrix’ not found
Hi,
when R CMD check is run under R-devel (2020-03-29 r78108) I get the following
error at installation:
Error in get(cname, envir = cwhere, inherits = FALSE) :
object ‘.__C__compMatrix’ not found
Error in setClassUnion("mMatrix", c("Matrix", "matrix")) :
unable to create union class: could not set members "Matrix"
This does not happen on R 3.6.3.
I tried with Matrix listed in Depends but I still get the same error.
Is this linked to some changes in union classes or the Matrix package?
Thank you.
Bests,
Renaud
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[R-pkg-devel] Failing incoming tests on 'stringsAsFactors = TRUE'
Trying to update a package on CRAN. It passes all the following tests: Local (r CMD --as-cran, R 3.6.2), devtools::check_win_dev, devtools::check_rhub, and my personal .yml file on travis-ci.org But, the incoming CRAN tests last week for windows fail (linux test throw different warning that I can fix). This is the log file: * using log directory 'd:/RCompile/CRANincoming/R-devel/SDraw.Rcheck' * using R version 4.0.0 alpha (2020-03-26 r78078) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * checking for file 'SDraw/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'SDraw' version '2.1.10' * checking CRAN incoming feasibility ... Note_to_CRAN_maintainers Maintainer: 'Trent McDonald ' * checking package namespace information ... OK --- snip multiple checks, all OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... WARNING Warning message: In options(stringsAsFactors = TRUE) : 'options(stringsAsFactors = TRUE)' is deprecated and will be disabled ERROR Warning message: In options(stringsAsFactors = TRUE) : 'options(stringsAsFactors = TRUE)' is deprecated and will be disabled * DONE Status: 1 ERROR, 1 WARNING Course forward unknown. Googling unproductive. I searched the package source for the use of 'stringsAsFactors'. I never set the option nor call data.frame with it nor read.csv nor use stringsAsFactors anywhere. In my local .Rprofile, I set 'options(stringsAsFactors=FALSE)', but that should not matter, correct? Suggestions? My local version is 3.6.2. Source code link : https://github.com/tmcd82070/SDraw *Trent McDonald* * Senior Statistician* [[alternative HTML version deleted]] __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel
Re: [R-pkg-devel] Failing incoming tests on 'stringsAsFactors = TRUE'
The warning about stringsAsFactors is very new; I don't think it's even mentioned in the NEWS, though the help ?data.frame mentions it. So I suspect either the Windows build happened in the middle of committing code to implement the warning, and it wasn't all tested yet, or some package you depend on sets options(stringsAsFactors = TRUE). I'd try submitting your package to Win-builder R-devel and see if it still finds that issue. (Instructions are here: https://win-builder.r-project.org/). Duncan Murdoch On 30/03/2020 6:42 p.m., Trent McDonald wrote: Trying to update a package on CRAN. It passes all the following tests: Local (r CMD --as-cran, R 3.6.2), devtools::check_win_dev, devtools::check_rhub, and my personal .yml file on travis-ci.org But, the incoming CRAN tests last week for windows fail (linux test throw different warning that I can fix). This is the log file: * using log directory 'd:/RCompile/CRANincoming/R-devel/SDraw.Rcheck' * using R version 4.0.0 alpha (2020-03-26 r78078) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * checking for file 'SDraw/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'SDraw' version '2.1.10' * checking CRAN incoming feasibility ... Note_to_CRAN_maintainers Maintainer: 'Trent McDonald ' * checking package namespace information ... OK --- snip multiple checks, all OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... WARNING Warning message: In options(stringsAsFactors = TRUE) : 'options(stringsAsFactors = TRUE)' is deprecated and will be disabled ERROR Warning message: In options(stringsAsFactors = TRUE) : 'options(stringsAsFactors = TRUE)' is deprecated and will be disabled * DONE Status: 1 ERROR, 1 WARNING Course forward unknown. Googling unproductive. I searched the package source for the use of 'stringsAsFactors'. I never set the option nor call data.frame with it nor read.csv nor use stringsAsFactors anywhere. In my local .Rprofile, I set 'options(stringsAsFactors=FALSE)', but that should not matter, correct? Suggestions? My local version is 3.6.2. Source code link : https://github.com/tmcd82070/SDraw *Trent McDonald* * Senior Statistician* [[alternative HTML version deleted]] __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel
