[R] Automation of R input

2013-04-23 Thread Vahe nr
Hi all,

I have R script which during its run require an input like this:
choose between one of the grouping factor available :
c("Village", "Country")

can I automate this part, in other word to pass for example Village when I
am running the script.

One more thing the script is the TimeSeriesAnalysis {ndvits}.

Thanks in advance for any help or suggestion.

Regards,
 Vahe

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[R] Re

2013-04-23 Thread Vahe nr
Hi andrija djurovic,

Thanks a lot for your replyand for your useful suggestions.
Actually I need to run this script without user interaction, so when it is
required to input Village I need to pass it automatically not by the user.

Regards,
 Vahe

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[R] One more question...

2013-04-23 Thread Vahe nr
Thanks a lot Andrija...

I run the following in Rsutdio:
library("ndvits", lib.loc="/home/vahe/R/i686-pc-linux-gnu-library/2.15")
ndvidirectory=paste(system.file("extdata/VITO_Mzimba",
package="ndvits"), "/", sep="")
region="Mzimba"
Ystart=2004
Yend=2006
shape="SLP_Mzimba"
shapedir=paste(system.file("extdata/shape", package="ndvits"),
   "/", sep="")
outfile = "mzimbaTS2.txt"
outfile2 = "MzimbaTS2.pdf"
outfiel3 = "my.pdf"
signal = TimeSeriesAnalysis(shape, shapedir, ndvidirectory, region, Ystart,
Yend, outfile, outfile2)
Village

So the village is passed, but when I am running it in R script from the
linux terminal it is repeating the line when I need to enter village
continually
can you suggest anything.

Regards,
 Vahe

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[R] One more question please...

2013-04-23 Thread Vahe nr
I executed the code in rstudio successfully:
library("ndvits", lib.loc="/home/vahe/R/i686-pc-linux-gnu-library/2.15")
ndvidirectory=paste(system.file("extdata/VITO_Mzimba",
package="ndvits"), "/", sep="")
region="Mzimba"
Ystart=2004
Yend=2006
shape="SLP_Mzimba"
shapedir=paste(system.file("extdata/shape", package="ndvits"),
   "/", sep="")
outfile = "mzimbaTS2.txt"
outfile2 = "MzimbaTS2.pdf"
outfiel3 = "my.pdf"
signal = TimeSeriesAnalysis(shape, shapedir, ndvidirectory, region, Ystart,
Yend, outfile, outfile2)
Village

But the same code is not going well in linux terminal by R script, it
is continually repeat the line enter Village or Country, what is the
difference here between R script and rstudio script ?

Regards,
 Vahe

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[R] Need a little help about this script...

2013-04-23 Thread Vahe nr
library("ndvits", lib.loc="/home/vahe/R/i686-pc-linux-gnu-library/2.15")
ndvidirectory=paste(system.file("extdata/VITO_Mzimba",
package="ndvits"), "/", sep="")
region="Mzimba"
Ystart=2004
Yend=2006
shape="SLP_Mzimba"
shapedir=paste(system.file("extdata/shape", package="ndvits"),
   "/", sep="")
outfile = "mzimbaTS2.txt"
outfile2 = "MzimbaTS2.pdf"
outfiel3 = "my.pdf"
signal = TimeSeriesAnalysis(shape, shapedir, ndvidirectory, region, Ystart,
Yend, outfile, outfile2)
Village

I have run this in rstudio successfully, so the Village is passed to c()
function, but when I am trying to run it from R script in linux terminal
the line of c() input is repeatedly coming back and it is not working...

any help or suggestion, thanks in advance.

Regards,
 Vahe

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[R] Fwd: One more question please...

2013-04-23 Thread Vahe nr
I executed the code in rstudio successfully:
library("ndvits", lib.loc="/home/vahe/R/i686-pc-linux-gnu-library/2.15")
ndvidirectory=paste(system.file("extdata/VITO_Mzimba",
package="ndvits"), "/", sep="")
region="Mzimba"
Ystart=2004
Yend=2006
shape="SLP_Mzimba"
shapedir=paste(system.file("extdata/shape", package="ndvits"),
   "/", sep="")
outfile = "mzimbaTS2.txt"
outfile2 = "MzimbaTS2.pdf"
outfiel3 = "my.pdf"
signal = TimeSeriesAnalysis(shape, shapedir, ndvidirectory, region, Ystart,
Yend, outfile, outfile2)
Village

But the same code is not going well in linux terminal by R script, it
is continually repeat the line enter Village or Country, what is the
difference here between R script and rstudio script ?

Regards,
 Vahe

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and provide commented, minimal, self-contained, reproducible code.


[R] Simulate user input in R

2013-04-23 Thread Vahe nr
Dear all,

Can we simulate user input in R ?
for example if we have a function which needs an input from the user to
continue its work, can we automate this step (simulate the input...)

Here is the sample:
choose between one of the grouping factor available :
c("Village", "Country")
we need to enter Village or Country to continue.can I automatically
pass one of the values without user input.

Regards,
 Vahe

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R-help@r-project.org mailing list
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.


Re: [R] Simulate user input in R

2013-04-24 Thread Vahe nr
Thanks Jeff for your reply...
The code is not written by me it is the NDVITS package which is used in R.
TimeSeriesAnalysis {ndvits}
And at that point it requires my input.

Regards,
 Vahe


On Wed, Apr 24, 2013 at 11:04 AM, Jeff Newmiller
wrote:

> Your example is not reproducible, so it is open to misinterpretation.
>
> Normally the approach taken in R is not to wait for user input, but have
> the user call the function with the desired values. One interpretation of
> your question is that the function you are using is broken by design, and
> you should re-write it.
>
> ---
> Jeff NewmillerThe .   .  Go Live...
> DCN:Basics: ##.#.   ##.#.  Live
> Go...
>   Live:   OO#.. Dead: OO#..  Playing
> Research Engineer (Solar/BatteriesO.O#.   #.O#.  with
> /Software/Embedded Controllers)   .OO#.   .OO#.  rocks...1k
> ---
> Sent from my phone. Please excuse my brevity.
>
> Vahe nr  wrote:
>
> >Dear all,
> >
> >Can we simulate user input in R ?
> >for example if we have a function which needs an input from the user to
> >continue its work, can we automate this step (simulate the input...)
> >
> >Here is the sample:
> >choose between one of the grouping factor available :
> >c("Village", "Country")
> >we need to enter Village or Country to continue.can I automatically
> >pass one of the values without user input.
> >
> >Regards,
> > Vahe
> >
> >   [[alternative HTML version deleted]]
> >
> >__
> >R-help@r-project.org mailing list
> >https://stat.ethz.ch/mailman/listinfo/r-help
> >PLEASE do read the posting guide
> >http://www.R-project.org/posting-guide.html
> >and provide commented, minimal, self-contained, reproducible code.
>
>

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[R] Error in validObject(.Object) :

2013-04-25 Thread Vahe nr
Hi all,

I am trying to run R NDVITS package, and I am getting the following error:
Error in validObject(.Object) :
  invalid class “GridTopology” object: cells.dim has incorrect dimension

Can you please suggest any idea about understanding this error and solving it.


Regards,
 Vahe

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and provide commented, minimal, self-contained, reproducible code.


[R] read .csv file and plot a graph

2013-05-03 Thread Vahe nr
Hi all,

I have a big .csv file (21Mb with 100 rows) it has this shape:
x
1 NaN
2 NaN
3 0.23

and so on.

So the first column has x as a header then row number, the second column
contains values between -1,1 and NaN for empty values.

What should I need to do is: create a new .csv file from this one excluding
NaN values and plot a line graph using the new .csv file.

Or can I use the old .csv file to plot a graph excluding NaN values.

Thanks in advance for any help or suggestions.

Regards,
 Vahe

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and provide commented, minimal, self-contained, reproducible code.