has anyone used collusion API for creating graphs?
I want to create graphs with using collusion API from annotated text has anyone used the api? do you have any better suggestion too? -- https://mail.python.org/mailman/listinfo/python-list
Regular Expression
I have a text as follows:
"#D{#C[Health] #P[Information] -
means any information, including #ST[genetic information],
whether #C[oral | (recorded in (any form | medium))], that
(1)#C[Is created or received by] a
#A[health care provider | health plan | public health authority | employer |
life insurer | school | university | or health care clearinghouse];
(2)#C[Relates to] #C[the past, present, or future physical | mental health |
condition of an individual] |
#C[the provision of health care to an individual] |
#C[the past, present, or future payment for the provision of health care to an
individual].}"
I want to get all elements that start with #C and are [] and put it in an
array. For example #C[Health], I try with regex but it doesn't work:
import re
import tkinter.filedialog
import readfile
j = 0
text = [ ]
content = readfile.pattread()
while j < len(content):
constraint = re.compile(r'(#C\[\w*\]'))
result = constraint.search(content[j],re.MULTILINE)
text.append(result)
print(text)
j = j+1
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Re: Regular Expression
On Sunday, 12 April 2015 19:28:44 UTC-4, MRAB wrote:
> On 2015-04-12 23:49, Pippo wrote:
> > I have a text as follows:
> >
> > "#D{#C[Health] #P[Information] -
> > means any information, including #ST[genetic information],
> > whether #C[oral | (recorded in (any form | medium))], that
> > (1)#C[Is created or received by] a
> > #A[health care provider | health plan | public health authority | employer
> > | life insurer | school | university | or health care clearinghouse];
> > (2)#C[Relates to] #C[the past, present, or future physical | mental health
> > | condition of an individual] |
> > #C[the provision of health care to an individual] |
> > #C[the past, present, or future payment for the provision of health care to
> > an individual].}"
> >
> > I want to get all elements that start with #C and are [] and put it in an
> > array. For example #C[Health], I try with regex but it doesn't work:
> >
> "... it doesn't work"? In what way doesn't it work?
>
> > import re
> > import tkinter.filedialog
> > import readfile
> >
> >
> >
> > j = 0
> >
> > text = [ ]
> >
> >
> > content = readfile.pattread()
> >
> > while j < len(content):
> >
> There's a syntax error here:
>
> > constraint = re.compile(r'(#C\[\w*\]'))
> > result = constraint.search(content[j],re.MULTILINE)
> > text.append(result)
> > print(text)
> > j = j+1
> >
result is empty! Although it should have a content.
What is the syntax error?
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Re: Regular Expression
On Sunday, 12 April 2015 19:44:05 UTC-4, Pippo wrote:
> On Sunday, 12 April 2015 19:28:44 UTC-4, MRAB wrote:
> > On 2015-04-12 23:49, Pippo wrote:
> > > I have a text as follows:
> > >
> > > "#D{#C[Health] #P[Information] -
> > > means any information, including #ST[genetic information],
> > > whether #C[oral | (recorded in (any form | medium))], that
> > > (1)#C[Is created or received by] a
> > > #A[health care provider | health plan | public health authority |
> > > employer | life insurer | school | university | or health care
> > > clearinghouse];
> > > (2)#C[Relates to] #C[the past, present, or future physical | mental
> > > health | condition of an individual] |
> > > #C[the provision of health care to an individual] |
> > > #C[the past, present, or future payment for the provision of health care
> > > to an individual].}"
> > >
> > > I want to get all elements that start with #C and are [] and put it in
> > > an array. For example #C[Health], I try with regex but it doesn't work:
> > >
> > "... it doesn't work"? In what way doesn't it work?
> >
> > > import re
> > > import tkinter.filedialog
> > > import readfile
> > >
> > >
> > >
> > > j = 0
> > >
> > > text = [ ]
> > >
> > >
> > > content = readfile.pattread()
> > >
> > > while j < len(content):
> > >
> > There's a syntax error here:
> >
> > > constraint = re.compile(r'(#C\[\w*\]'))
> > > result = constraint.search(content[j],re.MULTILINE)
> > > text.append(result)
> > > print(text)
> > > j = j+1
> > >
>
> result is empty! Although it should have a content.
>
> What is the syntax error?
I fixed the syntax error but the result shows:
>>>
[None]
[None, None]
[None, None, None]
[None, None, None, None]
[None, None, None, None, None]
[None, None, None, None, None, None]
[None, None, None, None, None, None, None]
[None, None, None, None, None, None, None, None]
>>>
No error but if I don't call the content I posted up and call this as a
content: #content = "#C[Health] #P[Information]"
result gives me #C[Health]
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Re: Regular Expression
On Sunday, 12 April 2015 19:47:09 UTC-4, Pippo wrote:
> On Sunday, 12 April 2015 19:44:05 UTC-4, Pippo wrote:
> > On Sunday, 12 April 2015 19:28:44 UTC-4, MRAB wrote:
> > > On 2015-04-12 23:49, Pippo wrote:
> > > > I have a text as follows:
> > > >
> > > > "#D{#C[Health] #P[Information] -
> > > > means any information, including #ST[genetic information],
> > > > whether #C[oral | (recorded in (any form | medium))], that
> > > > (1)#C[Is created or received by] a
> > > > #A[health care provider | health plan | public health authority |
> > > > employer | life insurer | school | university | or health care
> > > > clearinghouse];
> > > > (2)#C[Relates to] #C[the past, present, or future physical | mental
> > > > health | condition of an individual] |
> > > > #C[the provision of health care to an individual] |
> > > > #C[the past, present, or future payment for the provision of health
> > > > care to an individual].}"
> > > >
> > > > I want to get all elements that start with #C and are [] and put it in
> > > > an array. For example #C[Health], I try with regex but it doesn't work:
> > > >
> > > "... it doesn't work"? In what way doesn't it work?
> > >
> > > > import re
> > > > import tkinter.filedialog
> > > > import readfile
> > > >
> > > >
> > > >
> > > > j = 0
> > > >
> > > > text = [ ]
> > > >
> > > >
> > > > content = readfile.pattread()
> > > >
> > > > while j < len(content):
> > > >
> > > There's a syntax error here:
> > >
> > > > constraint = re.compile(r'(#C\[\w*\]'))
> > > > result = constraint.search(content[j],re.MULTILINE)
> > > > text.append(result)
> > > > print(text)
> > > > j = j+1
> > > >
> >
> > result is empty! Although it should have a content.
> >
> > What is the syntax error?
>
> I fixed the syntax error but the result shows:
>
> >>>
> [None]
> [None, None]
> [None, None, None]
> [None, None, None, None]
> [None, None, None, None, None]
> [None, None, None, None, None, None]
> [None, None, None, None, None, None, None]
> [None, None, None, None, None, None, None, None]
> >>>
>
>
> No error but if I don't call the content I posted up and call this as a
> content: #content = "#C[Health] #P[Information]"
>
> result gives me #C[Health]
what is the best way to separate the elements in the [] from the text?
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Re: Regular Expression
On Sunday, 12 April 2015 20:06:08 UTC-4, MRAB wrote:
> On 2015-04-13 00:47, Pippo wrote:
> > On Sunday, 12 April 2015 19:44:05 UTC-4, Pippo wrote:
> >> On Sunday, 12 April 2015 19:28:44 UTC-4, MRAB wrote:
> >> > On 2015-04-12 23:49, Pippo wrote:
> >> > > I have a text as follows:
> >> > >
> >> > > "#D{#C[Health] #P[Information] -
> >> > > means any information, including #ST[genetic information],
> >> > > whether #C[oral | (recorded in (any form | medium))], that
> >> > > (1)#C[Is created or received by] a
> >> > > #A[health care provider | health plan | public health authority |
> >> > > employer | life insurer | school | university | or health care
> >> > > clearinghouse];
> >> > > (2)#C[Relates to] #C[the past, present, or future physical | mental
> >> > > health | condition of an individual] |
> >> > > #C[the provision of health care to an individual] |
> >> > > #C[the past, present, or future payment for the provision of health
> >> > > care to an individual].}"
> >> > >
> >> > > I want to get all elements that start with #C and are [] and put it
> >> > > in an array. For example #C[Health], I try with regex but it doesn't
> >> > > work:
> >> > >
> >> > "... it doesn't work"? In what way doesn't it work?
> >> >
> >> > > import re
> >> > > import tkinter.filedialog
> >> > > import readfile
> >> > >
> >> > >
> >> > >
> >> > > j = 0
> >> > >
> >> > > text = [ ]
> >> > >
> >> > >
> >> > > content = readfile.pattread()
> >> > >
> >> > > while j < len(content):
> >> > >
> >> > There's a syntax error here:
> >> >
> >> > > constraint = re.compile(r'(#C\[\w*\]'))
> >> > > result = constraint.search(content[j],re.MULTILINE)
> >> > > text.append(result)
> >> > > print(text)
> >> > > j = j+1
> >> > >
> >>
> >> result is empty! Although it should have a content.
> >>
> >> What is the syntax error?
> >
> > I fixed the syntax error but the result shows:
> >
> >>>>
> > [None]
> > [None, None]
> > [None, None, None]
> > [None, None, None, None]
> > [None, None, None, None, None]
> > [None, None, None, None, None, None]
> > [None, None, None, None, None, None, None]
> > [None, None, None, None, None, None, None, None]
> >>>>
> >
> >
> > No error but if I don't call the content I posted up and call this as a
> > content: #content = "#C[Health] #P[Information]"
> >
> > result gives me #C[Health]
> >
> What does 'readfile.pattread()' return? Does it return a list of
> strings? I'm guessing it does.
yes it reads a file of string similar to the one I posted above
>
> Try printing each string you're trying to match using 'repr', i.e.:
>
> print(repr(content[j]))
>
> Do any look like they should match?
print(repr(content[j])) gives me the following:
[None]
'#D{#C[Health] #P[Information] - \n'
[None, None]
'means any information, including #ST[genetic information], \n'
[None, None, None]
'whether #C[oral | (recorded in (any form | medium))], that \n'
[None, None, None, None]
'(1)#C[Is created or received by] a \n'
[None, None, None, None, None]
'#A[health care provider | health plan | public health authority | employer |
life insurer | school | university | or health care clearinghouse]; \n'
[None, None, None, None, None, None]
'(2)#C[Relates to] #C[the past, present, or future physical | mental health |
condition of an individual] | \n'
[None, None, None, None, None, None, None]
'#C[the provision of health care to an individual] | \n'
[None, None, None, None, None, None, None, None]
'#C[the past, present, or future payment for the provision of health care to an
individual].}\n'
shouldn't it match "#C[Health]" in the first row? If not, what is the best way
to fetch these items in an array?
>
> If one doesn't, but you think it should, post it here so that someone
> can tell you why it doesn't! :-)
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calling an api in python code
I am new in this matter.. I need some help to understand how do I call an api in python code? -- https://mail.python.org/mailman/listinfo/python-list
Re: Regular Expression
On Sunday, 12 April 2015 20:46:19 UTC-4, Cameron Simpson wrote:
> >> >> > > constraint = re.compile(r'(#C\[\w*\]'))
> >> >> > > result = constraint.search(content[j],re.MULTILINE)
> >> >> > > text.append(result)
> >> >> > > print(text)
> [...]
> >> >> result is empty! Although it should have a content.
> [...]
> >> > I fixed the syntax error but the result shows:
> >> > [None]
> >> > [None, None]
> [...]
>
> Note that "None" is not "empty", though in this case more or less means what
> you think.
>
> You're getting None because the regexp fails to match.
>
> >> Try printing each string you're trying to match using 'repr', i.e.:
> >> print(repr(content[j]))
> >>
> >> Do any look like they should match?
> > print(repr(content[j])) gives me the following:
> >
> >[None]
> >'#D{#C[Health] #P[Information] - \n'
> [...]
> >shouldn't it match "#C[Health]" in the first row?
>
> It looks like it should, unless you have mangled your regular expression. You
> mentioned earlier that you fixed the syntax error, but you never actually
> recited the line after fixing it. Please cut/paste the _exact_ line where you
> compile the regexp as it is now. Superficially I would expect your regexp to
> work, but we would like to see it as it current is.
>
> Also note that you can print the regexp's .pattern attribute:
>
> print(constraint.pattern)
>
> as a check that what was compiled is what you intended to compile.
>
> >If not, what is the best way to fetch these items in an array?
>
> What you've got is ok. I would point out that as you're processing each line
> on
> its own you should not need "re.MULTILINE" in your .compile() call.
>
> Cheers,
> Cameron Simpson
>
> The upside of PHP is that it lets non-programmers create complex
> applications. The downside of PHP is that it lets non-programmers create
> complex applications. - Elliot Lee
This is the complete code:
import re
import tkinter.filedialog
import readfile
j = 0
text = []
#content = "#C[Health] #P[Information]"
content = readfile.pattread()
while j < len(content):
constraint = re.compile(r'(#C\[\w*\])')
result = constraint.search(content[j])
text.append(result)
print(constraint.pattern)
print(text)
print(repr(content[j]))
j = j+1
This is the result I get:
(#C\[\w*\])
[<_sre.SRE_Match object at 0x10292ee40>]
'#D{#C[Health] #P[Information] - \n'
(#C\[\w*\])
[<_sre.SRE_Match object at 0x10292ee40>, None]
'means any information, including #ST[genetic information], \n'
(#C\[\w*\])
[<_sre.SRE_Match object at 0x10292ee40>, None, None]
'whether #C[oral | (recorded in (any form | medium))], that \n'
(#C\[\w*\])
[<_sre.SRE_Match object at 0x10292ee40>, None, None, None]
'(1)#C[Is created or received by] a \n'
(#C\[\w*\])
[<_sre.SRE_Match object at 0x10292ee40>, None, None, None, None]
'#A[health care provider | health plan | public health authority | employer |
life insurer | school | university | or health care clearinghouse]; \n'
(#C\[\w*\])
[<_sre.SRE_Match object at 0x10292ee40>, None, None, None, None, None]
'(2)#C[Relates to] #C[the past, present, or future physical | mental health |
condition of an individual] | \n'
(#C\[\w*\])
[<_sre.SRE_Match object at 0x10292ee40>, None, None, None, None, None, None]
'#C[the provision of health care to an individual] | \n'
(#C\[\w*\])
[<_sre.SRE_Match object at 0x10292ee40>, None, None, None, None, None, None,
None]
'#C[the past, present, or future payment for the provision of health care to an
individual].}\n'
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Re: calling an api in python code
On Sunday, 12 April 2015 20:50:51 UTC-4, Steven D'Aprano wrote:
> On Mon, 13 Apr 2015 10:31 am, Pippo wrote:
>
> > I am new in this matter.. I need some help to understand how do I call an
> > api in python code?
>
> Your question is too general. It is like:
>
>
> "I am new to carpentry and wood-working. How do I use a tool?"
>
> Which tool? Hammer, electric drill, hand saw, electric saw, screwdriver,
> crowbar, something else?
>
>
> The API tells you how to use a library. That's what API means: "Application
> Programming Interface".
>
> The API for integers includes:
>
> - add integers using the + operator: 1 + 2
> - multiply integers using the * operator: 3 * 4
>
> The API for strings include:
>
> - use either single quotes to create a string: 'hello world'
> - or double quotes: "hello world"
> - call the upper() method with no arguments to return an uppercase
> version of the string: 'hello'.upper() -> 'HELLO'
> - call the split() method with no arguments to split the string
> on whitespace: 'hello world'.split() -> ['hello', 'world']
> - call the split() method with a string argument to split the string
> on that string: 'hello world'.split('o') -> ['hell', 'w', 'rld']
>
> and so on and so on and so on. Can you ask a more specific question?
>
>
> --
> Steven
This is what I want to use: https://github.com/mbrubeck/collusion
No proper documentation for it!
Is there an API for creating network graphs in python? I want to create network
for my text files.
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Re: Regular Expression
On Sunday, 12 April 2015 21:07:09 UTC-4, MRAB wrote:
> On 2015-04-13 01:55, Pippo wrote:
> > On Sunday, 12 April 2015 20:46:19 UTC-4, Cameron Simpson wrote:
> >> >> >> > > constraint = re.compile(r'(#C\[\w*\]'))
> >> >> >> > > result = constraint.search(content[j],re.MULTILINE)
> >> >> >> > > text.append(result)
> >> >> >> > > print(text)
> >> [...]
> >> >> >> result is empty! Although it should have a content.
> >> [...]
> >> >> > I fixed the syntax error but the result shows:
> >> >> > [None]
> >> >> > [None, None]
> >> [...]
> >>
> >> Note that "None" is not "empty", though in this case more or less means
> >> what
> >> you think.
> >>
> >> You're getting None because the regexp fails to match.
> >>
> >> >> Try printing each string you're trying to match using 'repr', i.e.:
> >> >> print(repr(content[j]))
> >> >>
> >> >> Do any look like they should match?
> >> > print(repr(content[j])) gives me the following:
> >> >
> >> >[None]
> >> >'#D{#C[Health] #P[Information] - \n'
> >> [...]
> >> >shouldn't it match "#C[Health]" in the first row?
> >>
> >> It looks like it should, unless you have mangled your regular expression.
> >> You
> >> mentioned earlier that you fixed the syntax error, but you never actually
> >> recited the line after fixing it. Please cut/paste the _exact_ line where
> >> you
> >> compile the regexp as it is now. Superficially I would expect your regexp
> >> to
> >> work, but we would like to see it as it current is.
> >>
> >> Also note that you can print the regexp's .pattern attribute:
> >>
> >> print(constraint.pattern)
> >>
> >> as a check that what was compiled is what you intended to compile.
> >>
> >> >If not, what is the best way to fetch these items in an array?
> >>
> >> What you've got is ok. I would point out that as you're processing each
> >> line on
> >> its own you should not need "re.MULTILINE" in your .compile() call.
> >>
> >> Cheers,
> >> Cameron Simpson
> >>
> >> The upside of PHP is that it lets non-programmers create complex
> >> applications. The downside of PHP is that it lets non-programmers create
> >> complex applications. - Elliot Lee
> >
> > This is the complete code:
> >
> > import re
> > import tkinter.filedialog
> > import readfile
> >
> >
> >
> > j = 0
> >
> > text = []
> >
> >
> > #content = "#C[Health] #P[Information]"
> >
> > content = readfile.pattread()
> >
> > while j < len(content):
> >
> > constraint = re.compile(r'(#C\[\w*\])')
> > result = constraint.search(content[j])
> > text.append(result)
> > print(constraint.pattern)
> > print(text)
> > print(repr(content[j]))
> > j = j+1
> >
> > This is the result I get:
> > (#C\[\w*\])
> > [<_sre.SRE_Match object at 0x10292ee40>]
> > '#D{#C[Health] #P[Information] - \n'
> > (#C\[\w*\])
> > [<_sre.SRE_Match object at 0x10292ee40>, None]
> > 'means any information, including #ST[genetic information], \n'
> > (#C\[\w*\])
> > [<_sre.SRE_Match object at 0x10292ee40>, None, None]
> > 'whether #C[oral | (recorded in (any form | medium))], that \n'
> > (#C\[\w*\])
> > [<_sre.SRE_Match object at 0x10292ee40>, None, None, None]
> > '(1)#C[Is created or received by] a \n'
> > (#C\[\w*\])
> > [<_sre.SRE_Match object at 0x10292ee40>, None, None, None, None]
> > '#A[health care provider | health plan | public health authority | employer
> > | life insurer | school | university | or health care clearinghouse]; \n'
> > (#C\[\w*\])
> > [<_sre.SRE_Match object at 0x10292ee40>, None, None, None, None, None]
> > '(2)#C[Relates to] #C[the past, present, or future physical | mental health
> > | condition of an individual] | \n'
> > (#C\[\w*\])
> > [<_sre.SRE_Match object at 0x10292ee40>, None, None, None, None, None, None]
> > '#C[the provision of health care to an individual] | \n'
> > (#C\[\w*\])
> > [<_sre.SRE_Match object at 0x10292ee40>, None, None, None, None, None,
> > None, None]
> > '#C[the past, present, or future payment for the provision of health care
> > to an individual].}\n'
> >
> The search returns a match object. If you want the text that it found,
> use the match object's .group method.
If I add the print it gives me error:
import re
import tkinter.filedialog
import readfile
j = 0
text = []
content = readfile.pattread()
constraint = re.compile(r'(#C\[\w*\])')
while j < len(content):
result = constraint.search(content[j])
text.append(result)
print(constraint.pattern)
print(result.group(0))
print(text)
print(repr(content[j]))
j = j+1
(#C\[\w*\])
#C[Health]
[<_sre.SRE_Match object at 0x10215de40>]
'#D{#C[Health] #P[Information] - \n'
(#C\[\w*\])
Traceback (most recent call last):
File "/Users/sepidehghanavati/Desktop/Programs/python/Python3.3/Main
Modules/testpattern.py", line 23, in
print(result.group(0))
AttributeError: 'NoneType' object has no attribute 'group'
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Re: Regular Expression
On Sunday, 12 April 2015 21:21:48 UTC-4, Cameron Simpson wrote:
> On 12Apr2015 17:55, Pippo wrote:
> >On Sunday, 12 April 2015 20:46:19 UTC-4, Cameron Simpson wrote:
> >> It looks like it should, unless you have mangled your regular expression.
> [...]
> >> Also note that you can print the regexp's .pattern attribute:
> >> print(constraint.pattern)
> >> as a check that what was compiled is what you intended to compile.
> [...]
> >This is the complete code:
> [...]
>
> Thank you.
>
> >while j < len(content):
> >constraint = re.compile(r'(#C\[\w*\])')
> >result = constraint.search(content[j])
>
> I notice you seem to have incorporated MRAB's suggestion that the
> re.MULTILINE
> is a parameter for re.compile, not re.search, and also my suggestion that you
> don't need it at all.
>
> >text.append(result)
> >print(constraint.pattern)
> >print(text)
> >print(repr(content[j]))
> >j = j+1
> >
> >This is the result I get:
> >(#C\[\w*\])
> >[<_sre.SRE_Match object at 0x10292ee40>]
> >'#D{#C[Health] #P[Information] - \n'
> >(#C\[\w*\])
> >[<_sre.SRE_Match object at 0x10292ee40>, None]
>
> I think you've missed the first line, but the above output looks correct to
> me
> at this point.
>
> You may want to modify your code to say something like this:
>
> if result is not None:
> text.append(result)
>
> so that you only accrue matches in your text list.
>
> Then there are assorted things that can be done to improve the code in
> general,
> but could you see if you actual bugs are now fixed?
>
> Cheers,
> Cameron Simpson
>
> A program in conformance will not tend to stay in conformance, because even if
> it doesn't change, the standard will. - Norman Diamond
Thanks Cameron, I added the if statement but I still get this error:
Traceback (most recent call last):
File "/Users/sepidehghanavati/Desktop/Programs/python/Python3.3/Main
Modules/testpattern.py", line 24, in
print(result.group(0))
AttributeError: 'NoneType' object has no attribute 'group'
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Anyone used snap.py for drawing a graph?
Hi, Any guide on this? http://snap.stanford.edu/snappy/#download -- https://mail.python.org/mailman/listinfo/python-list
Re: Regular Expression
> Put the print inside the "if"; you don't really care when result is None, and
> anyway you can't access .group when it is None - it is not an 're.match"
> object, because there was no match.
Thanks Cameron, this worked.
>
> Once you're happy you should consider what happens when there is more than
> one
> "C#[blah]" in a line (if that happens; you know the data better than we).
Now I have this input data:
#D{#C[Health] #P[Information] -
means any information, including #ST[genetic information],
whether #C[oral | (recorded in (any form | medium))], that
(1)#C[Is created or received by] a
#A[health care provider | health plan | public health authority | employer |
life insurer | school | university | or health care clearinghouse];
(2)#C[Relates to] #C[the past, present, or future physical | mental health |
condition of an individual] |
#C[the provision of health care to an individual] |
#C[the past, present, or future payment for the provision of health care to an
individual].}
The result of my code is this:
#C[Health]
[<_sre.SRE_Match object at 0x10212ee40>]
[<_sre.SRE_Match object at 0x10212ee40>]
[<_sre.SRE_Match object at 0x10212ee40>]
[<_sre.SRE_Match object at 0x10212ee40>]
[<_sre.SRE_Match object at 0x10212ee40>]
[<_sre.SRE_Match object at 0x10212ee40>]
[<_sre.SRE_Match object at 0x10212ee40>]
[<_sre.SRE_Match object at 0x10212ee40>]
The code itself:
import re
import tkinter.filedialog
import readfile
j = 0
text = []
content = readfile.pattread()
constraint = re.compile(r'(#C\[\w*\])')
while j < len(content):
result = constraint.search(content[j])
if result is not None:
text.append(result)
print(result.group(0))
print(text)
j = j+1
I know that "[<_sre.SRE_Match object at 0x10212ee40>]" is the result of
print(text). Does this mean that we ONLY found one match object?
What about if I want the code finds also this one? #C[Is created or received
by]?
or this one?
#C[the past, present, or future physical | mental health | condition of an
individual]
Is it because of the space and other characters that it doesn't match them?
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Re: Regular Expression
Sweet! Thanks all of you! I matched everything except these ones... trying to find the best way > whether #C[oral | (recorded in (any form | medium))], that #C[the past, present, or future physical | mental health | condition of an individual] | > #C[the past, present, or future payment for the provision of health care to > an individual].} -- https://mail.python.org/mailman/listinfo/python-list
Re: Regular Expression
I fixed all! Thanks. This is the result: #C[Health] #P[Information] #ST[genetic information] #C[oral | (recorded in (any form | medium))] #C[Is created or received by] #A[health care provider | health plan | public health authority | employer | life insurer | school | university | or health care clearinghouse] #C[Relates to] #C[the past, present, or future physical | mental health | condition of an individual] #C[the provision of health care to an individual] #C[the past, present, or future payment for the provision of health care to an individual] Now I want to save them in array and then create a graph for them... anyone has any suggestion? For example if the node starts with #P then this is the central node with the name P. All other nodes have to connect to this one or have a node that is connected to this one Also, how can I capture "or" in my node graphs? -- https://mail.python.org/mailman/listinfo/python-list
installing matplotlib
Hi guys, I am trying to install matplotlib and I keep getting error: Traceback (most recent call last): File "setup.py", line 155, in result = package.check() File "/Users/sepidehghanavati/Desktop/Programs/python/matplotlib-1.4.3/setupext.py", line 961, in check min_version='2.3', version=version) File "/Users/sepidehghanavati/Desktop/Programs/python/matplotlib-1.4.3/setupext.py", line 445, in _check_for_pkg_config if (not is_min_version(version, min_version)): File "/Users/sepidehghanavati/Desktop/Programs/python/matplotlib-1.4.3/setupext.py", line 173, in is_min_version return found_version >= expected_version File "/Library/Frameworks/Python.framework/Versions/3.3/lib/python3.3/distutils/version.py", line 76, in __ge__ c = self._cmp(other) File "/Library/Frameworks/Python.framework/Versions/3.3/lib/python3.3/distutils/version.py", line 343, in _cmp if self.version < other.version: TypeError: unorderable types: str() < int() any idea? -- https://mail.python.org/mailman/listinfo/python-list
Re: installing matplotlib
On Monday, 13 April 2015 15:58:58 UTC-4, Ned Deily wrote: > In article <176d49d3-6ff8-4d35-b8ec-647f13250...@googlegroups.com>, > Pippo wrote: > > I am trying to install matplotlib and I keep getting error: > [...] > > File > > > > "/Library/Frameworks/Python.framework/Versions/3.3/lib/python3.3/distutils/v > > ersion.py", line 343, in _cmp > > if self.version < other.version: > > TypeError: unorderable types: str() < int() > > > > any idea? > > If you are running on OS X 10.10 (Yosemite), try upgrading to a current > Python 3.4.x. 3.3.x is no longer supported and was released long before > Yosemite was. > > http://bugs.python.org/issue21811 > > -- > Ned Deily, > n...@acm.org Thanks -- https://mail.python.org/mailman/listinfo/python-list
showing a graph
Hi,
I want to show the graph for this code:
import re
from Tkinter import *
import tkFileDialog
import testpattern
import networkx as nx
import matplotlib.pyplot as plt
patternresult =[]
nodes = {}
edges = {}
pattern = ['(#P\[\w*\])', '(#C\[\w*[\s\(\w\,\s\|\)]+\])',
'(#ST\[\w*[\s\(\w\,\s\|\)]+\])', '(#A\[\w*[\s\(\w\,\s\|\)]+\])']
patternresult = testpattern.patternfinder()
G=nx.Graph()
for patres in patternresult:
G.add_node(patres)
if patres[1] == "P":
first_node = patres
for patres in patternresult:
if patres[1:3] == "ST":
G.add_edge(first_node, patres, label="Sub-type")
elif patres[1:2] == "C":
G.add_edge(first_node, patres, label="Constraint_by")
elif patres[1:3] == "A":
G.add_edge(first_node, patres, label="Created_by")
#graph = G.edge()
pos = nx.shell_layout(G)
#nx.draw(G, pos)
nx.draw_networkx_nodes(G, pos, nodelist=None,
node_size=300, node_color='r',
node_shape='o', alpha=1.0,
cmap=None, vmin=None, vmax=None,
ax=None, linewidths=None)
nx.draw_networkx_edges(G, pos, edgelist=None, width=1.0, edge_color='k',
style='solid',alpha=None, edge_cmap=None,
edge_vmin=None, edge_vmax=None,ax=None, arrows=True)
nx.draw_networkx_labels(G, pos,font_size=10, font_family='sans-serif')
plt.show()
#plt.savefig("path.png")
But when I run the code, only a bar is shown on my desktop without showing the
proper graph. Note that I checked the number of edges and the number of nodes
and they are correct and this output also has been shown:
#C[Health]
#P[Information]
#ST[genetic information]
#C[oral | (recorded in (any form | medium))]
#C[Is created or received by]
#A[health care provider | health plan | public health authority | employer |
life insurer | school | university | or health care clearinghouse]
#C[Relates to]
#C[the past, present, or future physical | mental health | condition of an
individual]
#C[the provision of health care to an individual]
#C[the past, present, or future payment for the provision of health care to an
individual]
I don't get any error. Just that I don't see any graph!
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Using Dictionary
How can I use dictionary to save the following information? #C[Health] #P[Information] #ST[genetic information] #C[oral | (recorded in (any form | medium))] #C[Is created or received by] #A[health care provider | health plan | public health authority | employer | life insurer | school | university | or health care clearinghouse] #C[Relates to] #C[the past, present, or future physical | mental health | condition of an individual] #C[the provision of health care to an individual] #C[the past, present, or future payment for the provision of health care to an individual] -- https://mail.python.org/mailman/listinfo/python-list
creating a graph out of text
Hi,
I am not sure why my code doesn't show the graph. It clearly creates the right
nodes and edges but it doesn't show them. Any idea?
mport re
from Tkinter import *
import tkFileDialog
import testpattern
import networkx as nx
import matplotlib.pyplot as plt
patternresult =[]
nodes = {}
edges = {}
pattern = ['(#P\[\w*\])', '(#C\[\w*[\s\(\w\,\s\|\)]+\])',
'(#ST\[\w*[\s\(\w\,\s\|\)]+\])', '(#A\[\w*[\s\(\w\,\s\|\)]+\])']
patternresult = testpattern.patternfinder()
G=nx.Graph()
for patres in patternresult:
G.add_node(patres)
if patres[1] == "P":
first_node = patres
for patres in patternresult:
if patres[1:3] == "ST":
G.add_edge(first_node, patres, label="Sub-type")
elif patres[1:2] == "C":
G.add_edge(first_node, patres, label="Constraint_by")
elif patres[1:3] == "A":
G.add_edge(first_node, patres, label="Created_by")
#graph = G.edge()
pos = nx.shell_layout(G)
#nx.draw(G, pos)
nx.draw_networkx_nodes(G, pos, nodelist=None,
node_size=300, node_color='r',
node_shape='o', alpha=1.0,
cmap=None, vmin=None, vmax=None,
ax=None, linewidths=None)
nx.draw_networkx_edges(G, pos, edgelist=None, width=1.0, edge_color='k',
style='solid',alpha=None, edge_cmap=None,
edge_vmin=None, edge_vmax=None,ax=None, arrows=True)
nx.draw_networkx_labels(G, pos,font_size=10, font_family='sans-serif')
plt.show()
#plt.savefig("path.png")
I think the problem starts from nx.draw
This is what I want to create graph for:
#C[Health]
#P[Information]
#ST[genetic information]
#C[oral | (recorded in (any form | medium))]
#C[Is created or received by]
#A[health care provider | health plan | public health authority | employer |
life insurer | school | university | or health care clearinghouse]
#C[Relates to]
#C[the past, present, or future physical | mental health | condition of an
individual]
#C[the provision of health care to an individual]
#C[the past, present, or future payment for the provision of health care to an
individual]
This also shows all of the edges that are created...
{'#C[the past, present, or future payment for the provision of health care to
an individual]': 1, '#A[health care provider | health plan | public health
authority | employer | life insurer | school | university | or health care
clearinghouse]': 0, '#C[Relates to]': 1, '#C[the past, present, or future
physical | mental health | condition of an individual]': 1, '#C[Is created or
received by]': 1, '#C[the provision of health care to an individual]': 1,
'#C[Health]': 1, '#C[oral | (recorded in (any form | medium))]': 1,
'#ST[genetic information]': 1, '#P[Information]': 8}
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Re: Using Dictionary
On Tuesday, 14 April 2015 09:54:46 UTC-4, Michiel Overtoom wrote:
> On Apr 14, 2015, at 15:34, Pippo wrote:
>
> > How can I use dictionary to save the following information?
>
> What a curious question. The purpose of a dictionary is not to save
> information, but to store data as a key -> value mapping:
>
> telbook = {}
> telbook["jan"] = "0627832873"
> telbook["mary"] = "050-932390"
>
> Or do you mean 'store' when you mention 'save'?
>
> ...and to store a bunch of lines you don't need a dictionary either. A list
> would do:
>
> info = [
> "#C[Health]",
> "#P[Information]",
> "#ST[genetic information]",
> ]
>
> Greetings,
>
> --
> "You can't actually make computers run faster, you can only make them do
> less." - RiderOfGiraffes
Thanks. I wanted to store them.
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