[Bug 274284] science/py-scipy hangs during configure phase
https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=274284 Charlie Li changed: What|Removed |Added CC||vish...@freebsd.org Status|New |Open Flags|maintainer-feedback?(python |maintainer-feedback+ |@FreeBSD.org) | --- Comment #5 from Charlie Li --- Building using the distutils method has been deprecated and finally removed with the 1.11.2; the new/current method is PEP-517 with the meson-python build backend. I have had a few scipy versions built successfully using PEP-517, including with the current openblas, but have not had a chance to verify runtime or test suite yet, particularly with mathematical correctness (since a couple build variables had to be removed). -- You are receiving this mail because: You are the assignee for the bug.
[exp - 124amd64-default-build-as-user][science/py-scipy] Failed for py39-scipy-1.11.1 in configure/runaway
You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: python@FreeBSD.org Log URL: https://pkg-status.freebsd.org/package19/data/124amd64-default-build-as-user/9ce8c29b90c7/logs/py39-scipy-1.11.1.log Build URL: https://pkg-status.freebsd.org/package19/build.html?mastername=124amd64-default-build-as-user&build=9ce8c29b90c7 Log: =>> Building science/py-scipy build started at Mon Oct 9 14:56:16 UTC 2023 port directory: /usr/ports/science/py-scipy package name: py39-scipy-1.11.1 building for: FreeBSD 124amd64-default-build-as-user-job-12 12.4-RELEASE-p6 FreeBSD 12.4-RELEASE-p6 amd64 maintained by: python@FreeBSD.org Makefile ident: Poudriere version: 3.2.8-23-ga7f8d188 Host OSVERSION: 150 Jail OSVERSION: 1204000 Job Id: 12 ---Begin Environment--- SHELL=/bin/csh OSVERSION=1204000 UNAME_v=FreeBSD 12.4-RELEASE-p6 UNAME_r=12.4-RELEASE-p6 BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-23-ga7f8d188 MASTERMNT=/poudriere/data/.m/124amd64-default-build-as-user/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= GID=0 UID=0 PWD=/poudriere/data/.m/124amd64-default-build-as-user/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=124amd64-default-build-as-user SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/poudriere/data/.m/124amd64-default-build-as-user/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR=py39 DEPENDS_ARGS= MAKE_ARGS= FLAVOR=py39 ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for py39-scipy-1.11.1: DOCS=on: Build and/or install documentation ===> Use 'make config' to modify these settings ---End OPTIONS List--- --MAINTAINER-- python@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- F77="gfortran12" F90="gfortran12" FC="gfortran12"FFLAGS="-O -std=legacy -Wl,-rpath=/usr/local/lib/gcc12" F90FLAGS="-O -std=legacy -Wl,-rpath=/usr/local/lib/gcc12" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc12" PYTHON="/usr/local/bin/python3.9" XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-scipy/work-py39 XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-scipy/work-py39 XDG_CACHE_HOME=/wrkdirs/usr/ports/science/py-scipy/work-py39/.cache HOME=/wrkdirs/usr/ports/science/py-scipy/work-py39 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/py-scipy/work-py39/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/py-scipy/work-py39/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- F77="gfortran12" F90="gfortran12" FC="gfortran12"FFLAGS="-O -std=legacy -Wl,-rpath=/usr/local/lib/gcc12" F90FLAGS="-O -std=legacy -Wl,-rpath=/usr/local/lib/gcc12" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc12" XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-scipy/work-py39 XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-scipy/work-py39 XDG_CACHE_HOME=/wrkdirs/usr/ports/science/py-scipy/work-py39/.cache HOME=/wrkdirs/usr/ports/science/py-scipy/work-py39 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/py-scipy/work-py39/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/py-scipy/work-py39/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/l ocal/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -shared -Wl,-rpath=/usr/local/lib/gcc12 -L/usr/local/lib/gcc12 -B/usr/local/bin -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PORTDOCS="" PYTHON_INCLUDEDIR=incl
[package - 132i386-default][science/py-scipy] Failed for py39-scipy-1.11.1 in configure/runaway
You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: python@FreeBSD.org Log URL: https://pkg-status.freebsd.org/beefy15/data/132i386-default/08943441f26e/logs/py39-scipy-1.11.1.log Build URL: https://pkg-status.freebsd.org/beefy15/build.html?mastername=132i386-default&build=08943441f26e Log: =>> Building science/py-scipy build started at Tue Oct 10 01:14:29 UTC 2023 port directory: /usr/ports/science/py-scipy package name: py39-scipy-1.11.1 building for: FreeBSD 132i386-default-job-13 13.2-RELEASE-p4 FreeBSD 13.2-RELEASE-p4 i386 maintained by: python@FreeBSD.org Makefile ident: Poudriere version: 3.2.8-23-ga7f8d188 Host OSVERSION: 150 Jail OSVERSION: 1302001 Job Id: 13 ---Begin Environment--- SHELL=/bin/csh UNAME_p=i386 UNAME_m=i386 OSVERSION=1302001 UNAME_v=FreeBSD 13.2-RELEASE-p4 UNAME_r=13.2-RELEASE-p4 BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-23-ga7f8d188 MASTERMNT=/usr/local/poudriere/data/.m/132i386-default/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/132i386-default/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=132i386-default SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/132i386-default/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR=py39 DEPENDS_ARGS= MAKE_ARGS= FLAVOR=py39 ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for py39-scipy-1.11.1: DOCS=on: Build and/or install documentation ===> Use 'make config' to modify these settings ---End OPTIONS List--- --MAINTAINER-- python@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- F77="gfortran12" F90="gfortran12" FC="gfortran12"FFLAGS="-O -std=legacy -Wl,-rpath=/usr/local/lib/gcc12" F90FLAGS="-O -std=legacy -Wl,-rpath=/usr/local/lib/gcc12" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc12" PYTHON="/usr/local/bin/python3.9" XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-scipy/work-py39 XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-scipy/work-py39 XDG_CACHE_HOME=/wrkdirs/usr/ports/science/py-scipy/work-py39/.cache HOME=/wrkdirs/usr/ports/science/py-scipy/work-py39 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/py-scipy/work-py39/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/py-scipy/work-py39/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- F77="gfortran12" F90="gfortran12" FC="gfortran12"FFLAGS="-O -std=legacy -Wl,-rpath=/usr/local/lib/gcc12" F90FLAGS="-O -std=legacy -Wl,-rpath=/usr/local/lib/gcc12" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc12" XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-scipy/work-py39 XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-scipy/work-py39 XDG_CACHE_HOME=/wrkdirs/usr/ports/science/py-scipy/work-py39/.cache HOME=/wrkdirs/usr/ports/science/py-scipy/work-py39 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/py-scipy/work-py39/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/py-scipy/work-py39/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/l ocal/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -shared -Wl,-rpath=/usr/local/lib/gcc12 -L/usr/local/lib/gcc12 -B/usr/local/bin -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PORTDOCS="" PYTHON_INCLUDEDIR=include/python3.9 PYTHON_LIBDIR=lib/pyt
[package - 132i386-quarterly][science/py-scipy] Failed for py39-scipy-1.11.1 in configure/runaway
You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: python@FreeBSD.org Log URL: https://pkg-status.freebsd.org/beefy13/data/132i386-quarterly/32195e384156/logs/py39-scipy-1.11.1.log Build URL: https://pkg-status.freebsd.org/beefy13/build.html?mastername=132i386-quarterly&build=32195e384156 Log: =>> Building science/py-scipy build started at Tue Oct 10 01:59:23 UTC 2023 port directory: /usr/ports/science/py-scipy package name: py39-scipy-1.11.1 building for: FreeBSD 132i386-quarterly-job-10 13.2-RELEASE-p4 FreeBSD 13.2-RELEASE-p4 i386 maintained by: python@FreeBSD.org Makefile ident: Poudriere version: 3.2.8-23-ga7f8d188 Host OSVERSION: 150 Jail OSVERSION: 1302001 Job Id: 10 ---Begin Environment--- SHELL=/bin/csh UNAME_p=i386 UNAME_m=i386 OSVERSION=1302001 UNAME_v=FreeBSD 13.2-RELEASE-p4 UNAME_r=13.2-RELEASE-p4 BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-23-ga7f8d188 MASTERMNT=/usr/local/poudriere/data/.m/132i386-quarterly/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/132i386-quarterly/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=132i386-quarterly SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/132i386-quarterly/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR=py39 DEPENDS_ARGS= MAKE_ARGS= FLAVOR=py39 ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for py39-scipy-1.11.1: DOCS=on: Build and/or install documentation ===> Use 'make config' to modify these settings ---End OPTIONS List--- --MAINTAINER-- python@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- F77="gfortran12" F90="gfortran12" FC="gfortran12"FFLAGS="-O -std=legacy -Wl,-rpath=/usr/local/lib/gcc12" F90FLAGS="-O -std=legacy -Wl,-rpath=/usr/local/lib/gcc12" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc12" PYTHON="/usr/local/bin/python3.9" XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-scipy/work-py39 XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-scipy/work-py39 XDG_CACHE_HOME=/wrkdirs/usr/ports/science/py-scipy/work-py39/.cache HOME=/wrkdirs/usr/ports/science/py-scipy/work-py39 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/py-scipy/work-py39/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/py-scipy/work-py39/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- F77="gfortran12" F90="gfortran12" FC="gfortran12"FFLAGS="-O -std=legacy -Wl,-rpath=/usr/local/lib/gcc12" F90FLAGS="-O -std=legacy -Wl,-rpath=/usr/local/lib/gcc12" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc12" XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-scipy/work-py39 XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-scipy/work-py39 XDG_CACHE_HOME=/wrkdirs/usr/ports/science/py-scipy/work-py39/.cache HOME=/wrkdirs/usr/ports/science/py-scipy/work-py39 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/py-scipy/work-py39/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/py-scipy/work-py39/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/l ocal/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -shared -Wl,-rpath=/usr/local/lib/gcc12 -L/usr/local/lib/gcc12 -B/usr/local/bin -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PORTDOCS="" PYTHON_INCLUDEDIR=include/python3.9 PYTHON_
[Bug 274284] science/py-scipy hangs during configure phase
https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=274284 --- Comment #6 from Charlie Li --- Please give review D42144 a try. -- You are receiving this mail because: You are the assignee for the bug.
