[PyMOL] 2-fold symmetry notation

2012-02-02 Thread shivesh kumar


 Dear all,

 I appreciate if anyone can help me to show 2-fold symmetry in pymol? I mean 
the notation.

Thanks.--
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[PyMOL] To increase the resolution in pymol

2006-10-04 Thread shivesh kumar

Dear all,
I have to increase the resolution of structure in pymol,I have used ray
command.
ray 2000,2000.Is anything more I can do
Thanx
Shivesh


[PyMOL] to access more color in pymol

2006-10-20 Thread shivesh kumar

Dear all,
How can I use Setting-Edit all option for more color...on double clicking
the color,what happens,it never comes to the color list nor in the working
place.Thanx in advance.
Shivesh


[PyMOL] more color in pymol

2006-10-22 Thread shivesh kumar
Dear all
  How the setting--edit all option can be used for more color,clicking color 
how it can be used.Thanx.
  Shivesh


shivesh

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[PyMOL] more color in pymol

2006-10-25 Thread shivesh kumar
Dear all,
How can I use the color option in the Setting
menu(Edit all) to get more color in the cartoon.Thanx.
Shivesh

shivesh

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[PyMOL] color in pymol

2006-10-28 Thread shivesh kumar
Dear all,
How can I use the color option in the Setting
menu(Edit all) to get more color in the cartoon.Thanx.
Shivesh

shivesh


shivesh
 
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[PyMOL] thread in pymol

2006-10-31 Thread shivesh kumar
Dear all,
  How can I get the thread like structure of the protein molecule as for 
superimposition,ribbon doesn't look good.Thread is smooth and looks 
beautiful.thanx 
  Shivesh


shivesh
 
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[PyMOL] bond distance in pymol

2006-11-24 Thread shivesh kumar
Dear all,
  Is there anyway to calculate the bond distances in pymol and to show the bond 
distances also...
  thanx in advance
  S


shivesh
 
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[PyMOL] electrostatic potential structure

2006-11-29 Thread shivesh kumar
Dear all,
  How can I get the electrostatic potential structure of my protein 
molecule.Thanx in advance.
  S


shivesh
 
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[PyMOL] movie

2007-02-01 Thread shivesh kumar
Dear all,
  How can I make the movie.I have .pdb file.
  First I have to load the file,then mset.Then what is util.mrock.Please help.
  Thanx in advance.
  Shivesh


shivesh
 
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[PyMOL] movie

2007-02-01 Thread shivesh kumar

Dear all,
How can I make a movie of crystal structure using PYMOL.Thanx in advance.
Shivesh


[PyMOL] movie in pymol

2007-02-08 Thread shivesh kumar
Dear all,
  I am trying to make a movie in pymol with two structure of the same 
protein.one is crystal structure and one is NMR structure.The N-terminal part 
of crystal structure is in open conformation whereas that of NMR is closed.What 
command should I use.Is it possible to make the movie with the commands given 
in pymol manual or I should use Slerpy from PyMOL wiki.Any suggestions are 
welcome.Thanx in advance to all.
  Shivesh


shivesh
 
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[PyMOL] coloring figure

2007-07-31 Thread shivesh kumar
Dear all,
  How can I use the color from the  Setting menu.The ranges of color is more.I 
first select the region  which I have to make boron color,I used the color 
boron in setting-color menu,But it failed.Any suggestions are welcome.Thanx in 
advance.
  Shivesh kumar


shivesh
   
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[PyMOL] electron density map representation as dot

2007-08-15 Thread shivesh kumar
Dear all
  How can the dot representation of electron density map is made as in the 
figure in attachment,I know the mess representation through isomesh 
command.Please suggest.Thanx in advance.
  Shivesh kumar


shivesh
   
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[PyMOL] electron density map

2007-08-17 Thread shivesh kumar
Dear all,
  I have to show the electron density at two different positions in the 
structure, wheree two residues are interacting.I have made the object.I load 
the 2fofc.xplor.and given the isomesh m1,map1,1.0,(A...),carve=2.0.I can 
select either the whole chainA or a particular residue,it shows the Electron 
density map.But,how can I get the density at two different residues which are 
apart from each other coming closer in 3D structure,and interacting.
  All suggestions are welcome.Thanx in advance.
  Shivesh Kumar 


shivesh
   
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