Re: [PyMOL] Enable selected atoms of disabled object
Hej, a disabled object will not show any display, but you can easily work with selections, provided that a selection is defined. Try something like: hide everything object show sticks selection Cheers, Andreas On Jun 19, 2017 6:00 AM, "Vijay Masand" wrote: > Dear All, > With the help of internal GUI, we can disable the appearance of an > object,however we can still operate on the representations of objects > that are disabled, even with the commands show and hide. The results > are apparent only when we subsequently enable the object. > Is there any way to enable selected atoms of disabled object? I mean > is there is method to visualize selected atoms even when the the > object is not visible in PyMOL's viewer area. > Cheers > Vijay > > -- > Assistant Professor > Department of Chemistry, > Vidya Bharati College, Amravati, 444 602 > Maharashtra, India. > Phone number- +91-9403312628 > https://sites.google.com/site/vijaymasand/ > > > -- > Check out the vibrant tech community on one of the world's most > engaging tech sites, Slashdot.org! http://sdm.link/slashdot > ___ > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > -- Check out the vibrant tech community on one of the world's most engaging tech sites, Slashdot.org! http://sdm.link/slashdot___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
Re: [PyMOL] Enable selected atoms of disabled object
Hi Andreas That's the solution I was looking for. Thanks. Cheers Vijay On 6/19/17, Andreas Warnecke <4ndreas.warne...@gmail.com> wrote: > Hej, > > a disabled object will not show any display, but you can easily work with > selections, provided that a selection is defined. > > Try something like: > hide everything object > show sticks selection > > Cheers, > > Andreas > > On Jun 19, 2017 6:00 AM, "Vijay Masand" wrote: > >> Dear All, >> With the help of internal GUI, we can disable the appearance of an >> object,however we can still operate on the representations of objects >> that are disabled, even with the commands show and hide. The results >> are apparent only when we subsequently enable the object. >> Is there any way to enable selected atoms of disabled object? I mean >> is there is method to visualize selected atoms even when the the >> object is not visible in PyMOL's viewer area. >> Cheers >> Vijay >> >> -- >> Assistant Professor >> Department of Chemistry, >> Vidya Bharati College, Amravati, 444 602 >> Maharashtra, India. >> Phone number- +91-9403312628 >> https://sites.google.com/site/vijaymasand/ >> >> >> -- >> Check out the vibrant tech community on one of the world's most >> engaging tech sites, Slashdot.org! http://sdm.link/slashdot >> ___ >> PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) >> Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users >> Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net >> > -- Assistant Professor Department of Chemistry, Vidya Bharati College, Amravati, 444 602 Maharashtra, India. Phone number- +91-9403312628 https://sites.google.com/site/vijaymasand/ -- Check out the vibrant tech community on one of the world's most engaging tech sites, Slashdot.org! http://sdm.link/slashdot ___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
[PyMOL] Number of bonds separating two atoms
Dear PyMOL Users, I am looking for a command which can determine the separation of two atoms in terms of chemical bonds. I would like to use it in a script to assign atom types for peptide molecules. Does any of you have an idea for that? Thanks in advance, Andras Wacha -- András Ferenc Wacha, PhD research fellow, CREDO instrument responsible Biological Nanochemistry Research Group Institute of Materials and Environmental Chemistry Research Centre for Natural Sciences Hungarian Academy of Sciences (RCNS HAS) Magyar tudósok körútja 2. H-1117 Budapest, Hungary Phone: +36-1-382-6427 Web: http://bionano.ttk.mta.hu, CREDO SAXS instrument: http://credo.ttk.mta.hu 0x63C032B6.asc Description: application/pgp-keys signature.asc Description: OpenPGP digital signature -- Check out the vibrant tech community on one of the world's most engaging tech sites, Slashdot.org! http://sdm.link/slashdot___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
