Re: [PyMOL] Stereo Set up with PyMOL v1.7.4.4 EDU

2016-05-27 Thread Christoph Parthier 

Dear Chris,

We have  a similar setup using an older Quadro card employing a dual 
screen output (one DP/DVI-port for each projector). The two "screens" 
are in "clone mode" (NVIDIA control panel), as described e.h. here:


http://nvidia.custhelp.com/app/answers/detail/a_id/3012/~/how-to-configure-passive-or-dual-pipe-stereo-with-quadro-cards-in-windows-7.

The projectors are aligned using a projector-built-in test pattern.

In the NVIDIA 3D settings you have to activate 'Stereo' using the 
'NVidia Clone Mode Stereo' (or similarly named). In PyMol you use the 
'Quad-buffered Stereo' option. The NVIDIA driver will do the rest to 
provide the individual left/right images. It works for full screen and 
also for windowed PyMol (OpenGL windows with activated stereo only). The 
rest of the desktop remains "cloned".


Hope this helps,
Christoph



On 05/26/2016 08:34 PM, Christopher Colbert wrote:

Hi All,

We "upgraded" our 3D viewing room with a computer that has a Quadro 
K2000 video card running Windows 7.  The computer displays through two 
NEC projectors with polarizing filters that display agains a special 
screen.  Stereo is viewed through polarized glasses just like in the 
movie theater.   We had the stereo working a couple years ago, but it 
stopped with the upgrade.  Here is my question:


Are there any special Quadro settings I need to set to have the video 
card play nice with PyMOL?
Which stereo_mode do I set for this type of setup?  I ran through all 
the options (1 – 12), but none caused the appropriate stereo effect
Am I restricted to full screen mode or can I run stereo in windowed 
mode?  We only tried Windowed mode.
Does the stereo_mode change if I am using full screen mode versus 
window mode?


Any help or resources you can point me to would be greatly 
appreciated.  (Proper procedure for aligning the projectors would be 
greatly appreciated.  They are fairly well aligned centrally, but 
become blurry from misalignment at the edges.)


Your help is greatly appreciated.

Cheers,

Chris



--
Christopher L. Colbert, Ph.D.
Associate Professor
Department of Chemistry and Biochemistry
North Dakota State University
P.O. Box 6050 Dept. 2710
Fargo, ND 58108-6050
PH: (701) 231-7946
FAX: (701) 231-8324


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Re: [PyMOL] Stereo Set up with PyMOL v1.7.4.4 EDU

2016-05-27 Thread Christopher Colbert 
Thanks to Christoph and Jeroen!

This was the perfect resource to make it work.

Cheers,

Chris

--
Christopher L. Colbert, Ph.D.
Assistant Professor
Department of Chemistry and Biochemistry
North Dakota State University
P.O. Box 6050 Dept. 2710
Fargo, ND 58108-6050
PH: (701) 231-7946
FAX: (701) 231-8324

From: Christoph Parthier 
mailto:cparth...@googlemail.com>>
Date: Friday, May 27, 2016 6:59 AM
To: 
"pymol-users@lists.sourceforge.net" 
mailto:pymol-users@lists.sourceforge.net>>
Cc: Christopher Colbert 
mailto:christopher.colb...@ndsu.edu>>
Subject: Re: [PyMOL] Stereo Set up with PyMOL v1.7.4.4 EDU

Dear Chris,

We have  a similar setup using an older Quadro card employing a dual screen 
output (one DP/DVI-port for each projector). The two "screens" are in "clone 
mode" (NVIDIA control panel), as described e.h. here:

http://nvidia.custhelp.com/app/answers/detail/a_id/3012/~/how-to-configure-passive-or-dual-pipe-stereo-with-quadro-cards-in-windows-7.

The projectors are aligned using a projector-built-in test pattern.

In the NVIDIA 3D settings you have to activate 'Stereo' using the 'NVidia Clone 
Mode Stereo' (or similarly named). In PyMol you use the 'Quad-buffered Stereo' 
option. The NVIDIA driver will do the rest to provide the individual left/right 
images. It works for full screen and also for windowed PyMol (OpenGL windows 
with activated stereo only). The rest of the desktop remains "cloned".

Hope this helps,
Christoph



On 05/26/2016 08:34 PM, Christopher Colbert wrote:
Hi All,

We "upgraded" our 3D viewing room with a computer that has a Quadro K2000 video 
card running Windows 7.  The computer displays through two NEC projectors with 
polarizing filters that display agains a special screen.  Stereo is viewed 
through polarized glasses just like in the movie theater.   We had the stereo 
working a couple years ago, but it stopped with the upgrade.  Here is my 
question:

Are there any special Quadro settings I need to set to have the video card play 
nice with PyMOL?
Which stereo_mode do I set for this type of setup?  I ran through all the 
options (1 - 12), but none caused the appropriate stereo effect
Am I restricted to full screen mode or can I run stereo in windowed mode?  We 
only tried Windowed mode.
Does the stereo_mode change if I am using full screen mode versus window mode?

Any help or resources you can point me to would be greatly appreciated.  
(Proper procedure for aligning the projectors would be greatly appreciated.  
They are fairly well aligned centrally, but become blurry from misalignment at 
the edges.)

Your help is greatly appreciated.

Cheers,

Chris



--
Christopher L. Colbert, Ph.D.
Associate Professor
Department of Chemistry and Biochemistry
North Dakota State University
P.O. Box 6050 Dept. 2710
Fargo, ND 58108-6050
PH: (701) 231-7946
FAX: (701) 231-8324



--
Mobile security can be enabling, not merely restricting. Employees who
bring their own devices (BYOD) to work are irked by the imposition of MDM
restrictions. Mobile Device Manager Plus allows you to control only the
apps on BYO-devices by containerizing them, leaving personal data untouched!
https://ad.doubleclick.net/ddm/clk/304595813;131938128;j



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consuming the most bandwidth. Provides multi-vendor support for NetFlow, 
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[PyMOL] PyMOL 1.8.2.1 bugfix release

2016-05-27 Thread Thomas Holder 
Greetings,

PyMOL 1.8.2.1 fixes a bug in the mutagenesis wizard and adds the "pick32bit" 
setting to work around graphics cards which don't support 32bit color depth for 
picking. Builds are available as usual from http://pymol.org/download

If you have encountered picking errors where the wrong atoms are selected or 
reported when clicking on them, please drop me an email with your graphics card 
and driver information. Thanks.

Cheers,
- The PyMOL Team at Schrödinger

-- 
Thomas Holder
PyMOL Principal Developer
Schrödinger, Inc.
--
What NetFlow Analyzer can do for you? Monitors network bandwidth and traffic
patterns at an interface-level. Reveals which users, apps, and protocols are 
consuming the most bandwidth. Provides multi-vendor support for NetFlow, 
J-Flow, sFlow and other flows. Make informed decisions using capacity 
planning reports. https://ad.doubleclick.net/ddm/clk/305295220;132659582;e
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