Re: [PyMOL] JyMOL vs JSMol

[Robert Hanson]

I guess I should chime in here. JSmol does read (some fraction of) PyMOL
session files. To be sure it has not been a priority to keep up to date
with all the amazing PyMOL capabilities, but certainly as a proof of
concept it has worked well, and it would be great to collaborate on this to
improve it more. See, for example:  http://noys3.weizmann.ac.il/a2jb/browse

I certainly don't claim to know anything about JyMOL, except I guess it
uses JNLP. Does Chrome support JNLP anymore?

Bob Hanson
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Re: [PyMOL] JyMOL vs JSMol

[H. Adam Steinberg]

Wow!!! do I need to apologize for for stating "that I could not use all my 
PyMOL files in Jmol!" I just threw some very complicated .PSE files at Jmol and 
it opened them all competently (so far)! I am very impressed and elated that I 
will not have to rebuild all of these files form scratch.

And yes Bob, if I find something that will not open in Jmol, or something that 
is misrepresented, I will let you know so we can possibly find a way to make it 
work.

Thank you for all your hard work on Jmol and JSmol!


> On Dec 15, 2015, at 6:03 AM, Robert Hanson  wrote:
> 
> I guess I should chime in here. JSmol does read (some fraction of) PyMOL 
> session files. To be sure it has not been a priority to keep up to date with 
> all the amazing PyMOL capabilities, but certainly as a proof of concept it 
> has worked well, and it would be great to collaborate on this to improve it 
> more. See, for example:  http://noys3.weizmann.ac.il/a2jb/browse 
> 
> 
> I certainly don't claim to know anything about JyMOL, except I guess it uses 
> JNLP. Does Chrome support JNLP anymore?
> 
> Bob Hanson
> 

H. Adam Steinberg
7904 Bowman Rd
Lodi, WI 53555
608/592-2366

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Re: [PyMOL] JyMOL vs JSMol

[Robert Hanson]

Don't worry. No apology necessary. It's a closely held secret that JSmol
can do this. In any case, trust me, you will find plenty that JSmol cannot
handle. There are many mysteries of the PSE format that I could only guess
at.

Enjoy!
​
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