[PyMOL] RMSD unit
Dear users, What is the unit of RMSD in pymol? Nanometer or angstrom? PyMOL>align structure1 & n. ca, structure2 & n. ca -- Ahmet Yıldırım -- Rapidly troubleshoot problems before they affect your business. Most IT organizations don't have a clear picture of how application performance affects their revenue. With AppDynamics, you get 100% visibility into your Java,.NET, & PHP application. Start your 15-day FREE TRIAL of AppDynamics Pro! http://pubads.g.doubleclick.net/gampad/clk?id=84349831&iu=/4140/ostg.clktrk___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
Re: [PyMOL] RMSD unit
angstrom J On Dec 12, 2013, at 3:41 AM, Ahmet yıldırım wrote: > Dear users, > > What is the unit of RMSD in pymol? Nanometer or angstrom? > > PyMOL>align structure1 & n. ca, structure2 & n. ca > > -- > Ahmet Yıldırım > > -- > Rapidly troubleshoot problems before they affect your business. Most IT > organizations don't have a clear picture of how application performance > affects their revenue. With AppDynamics, you get 100% visibility into your > Java,.NET, & PHP application. Start your 15-day FREE TRIAL of AppDynamics Pro! > http://pubads.g.doubleclick.net/gampad/clk?id=84349831&iu=/4140/ostg.clktrk___ > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net -- Rapidly troubleshoot problems before they affect your business. Most IT organizations don't have a clear picture of how application performance affects their revenue. With AppDynamics, you get 100% visibility into your Java,.NET, & PHP application. Start your 15-day FREE TRIAL of AppDynamics Pro! http://pubads.g.doubleclick.net/gampad/clk?id=84349831&iu=/4140/ostg.clktrk ___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
Re: [PyMOL] unable to install pymol 1.6.0.0 on centos 5.10
Hi thanks Pete, but I tried to install it with python 2.6.8 (the one I found on the net) and it still doesn't work (for any pymol version)... I eventually reinstalled a very old version (0.99) which is the only one working for now -- Edith Gincel === Universite Paris Descartes UFR des Sciences Pharmaceutiques et Biologiques UMR 8015 CNRS Laboratoire de cristallographie et RMN biologiques 4, avenue de l'Observatoire75270 PARIS Cedex 06 Tel: 33 (0) 1 53 73 96 87Fax: 33 (0) 1 43 26 69 18 email : edith.gin...@parisdescartes.fr === Le 10/12/2013 18:32, Pete Meyer a écrit : > Hi, > > It sounds like you should check the version of python you're using to > try to build pymol. > > I've been able to build pymol 1.4.1 using python 2.6.4 (and pmw 1.3.2) > on several linux distributions (although I haven't tried on Centos > 5.10) and OS X. > > Hope this helps, > > Pete > > Edith Gincel wrote: >> Dear all >> >> I am working on Centos 5.10, kernel 2.6.18-371.1.2.el5 >> >> I was using pymol 1.3r2, and it worked perfectly >> I installed a second screen (useful for NMR) on my computer, and >> since then, I have problems with pymol >> >> I first had to update my kernel, which is now the one I wrote on the >> top of my post. >> but then, I couldn't launch pymol, I always got a "segmentation >> fault" and that was it >> I couln't find any reason for that >> >> So, I decided to install a new version of pymol. >> I tried the 1.6.0.0 one, >> "python setup.py build install" >> Traceback (most recent call last): >>File "setup.py", line 142, in ? >> import create_shadertext >>File "/home/edith/logiciels/pymol/create_shadertext.py", line 8 >> with open(os.path.join(shaderdir, inputfile)) as f: >> ^ >> SyntaxError: invalid syntax >> >> So I tried the 1.5 version, no more success (with other errors) >> neither any of the former versions could be installed (unless the >> 1.3r2 which doesn't work at all) >> >> >> Does someone have any idea? >> >> thank you very much >> >> >> > > -- Rapidly troubleshoot problems before they affect your business. Most IT organizations don't have a clear picture of how application performance affects their revenue. With AppDynamics, you get 100% visibility into your Java,.NET, & PHP application. Start your 15-day FREE TRIAL of AppDynamics Pro! http://pubads.g.doubleclick.net/gampad/clk?id=84349831&iu=/4140/ostg.clktrk ___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
[PyMOL] how to define vectors between pseudoatoms
Hi All, I want to measure the angle between two lines in pymol. So I made two pseudoatoms on each line and want to define two vectors then measure the angle. How can I define this vector? Thanks! -- Rapidly troubleshoot problems before they affect your business. Most IT organizations don't have a clear picture of how application performance affects their revenue. With AppDynamics, you get 100% visibility into your Java,.NET, & PHP application. Start your 15-day FREE TRIAL of AppDynamics Pro! http://pubads.g.doubleclick.net/gampad/clk?id=84349831&iu=/4140/ostg.clktrk ___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
