Re: [PyMOL] dcd files
Hola Paola, if you were able to search the PyMOL mailing list archive (why am I not??), you'd find an email from Marius Retegan explaining how to enable DCD support in PyMOL: Open setup.py and uncomment lines 126, 127, 146 and change the zero on line 293 with a 1. Basically all the lines that deal with "VMD plugin support". Then recompile. Andreas Paola Beassoni wrote: > Hy Pymol Users! > > I have a dcd file from NAMD output. How should i load it and play it? I > can load it but the frames are not loaded, so i can`t play it! > thanks! > Paola > > -- > Paola Beassoni - PhD > Dpto. Biologia Molecular - FCEFQyN > Universidad Nacional de Rio Cuarto > Río Cuarto - Argentina > 00-54-358-4676422 > 00-54-358-4676232 (Fax) > -- Andreas Förster, Research Associate Paul Freemont & Xiaodong Zhang Labs Department of Biochemistry, Imperial College London http://www.msf.bio.ic.ac.uk -- Come build with us! The BlackBerry(R) Developer Conference in SF, CA is the only developer event you need to attend this year. Jumpstart your developing skills, take BlackBerry mobile applications to market and stay ahead of the curve. Join us from November 9 - 12, 2009. Register now! http://p.sf.net/sfu/devconference ___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
[PyMOL] Change location of measurement label
Hi! I need to make some pictures of very simple di-peptide systems, and need to include values (from wizard->measurement->dihedrals) of certain dihedral angles. However, the two labels end up very close, with the values almost on top of each other making them un-readable. Is there a way to change the location of the measurement labels? Thanks! /Per -- Come build with us! The BlackBerry(R) Developer Conference in SF, CA is the only developer event you need to attend this year. Jumpstart your developing skills, take BlackBerry mobile applications to market and stay ahead of the curve. Join us from November 9 - 12, 2009. Register now! http://p.sf.net/sfu/devconference ___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
Re: [PyMOL] Change location of measurement label
I don't know if this is version dependent, but in my case (version 1.2r2) you have to enter in editing mode (Mouse -> 3 Buttons Editing) and Ctrl+left click the label and drag. Hope this helps Marius On Wed, Oct 14, 2009 at 11:55 AM, Per Larsson wrote: > Hi! > > I need to make some pictures of very simple di-peptide systems, and > need to include values (from wizard->measurement->dihedrals) of > certain dihedral angles. However, the two labels end up very close, > with the values almost on top of each other making them un-readable. > Is there a way to change the location of the measurement labels? > > Thanks! > /Per > > > > -- > Come build with us! The BlackBerry(R) Developer Conference in SF, CA > is the only developer event you need to attend this year. Jumpstart your > developing skills, take BlackBerry mobile applications to market and stay > ahead of the curve. Join us from November 9 - 12, 2009. Register now! > http://p.sf.net/sfu/devconference > ___ > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > -- Come build with us! The BlackBerry(R) Developer Conference in SF, CA is the only developer event you need to attend this year. Jumpstart your developing skills, take BlackBerry mobile applications to market and stay ahead of the curve. Join us from November 9 - 12, 2009. Register now! http://p.sf.net/sfu/devconference ___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
Re: [PyMOL] Change location of measurement label
Switch the mouse into editing mode, then ctrl-left-click-and-drag on the label to reposition. Cheers, Warren -- Warren L. DeLano, Ph.D. war...@delsci.com (Sent from an iPhone -- please forgive brevity and/or typos!) On Oct 14, 2009, at 8:03 AM, "Per Larsson" wrote: > Hi! > > I need to make some pictures of very simple di-peptide systems, and > need to include values (from wizard->measurement->dihedrals) of > certain dihedral angles. However, the two labels end up very close, > with the values almost on top of each other making them un-readable. > Is there a way to change the location of the measurement labels? > > Thanks! > /Per > > > > --- > --- > --- > - > Come build with us! The BlackBerry(R) Developer Conference in SF, CA > is the only developer event you need to attend this year. Jumpstart > your > developing skills, take BlackBerry mobile applications to market and > stay > ahead of the curve. Join us from November 9 - 12, 2009. Register now! > http://p.sf.net/sfu/devconference > ___ > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/pymol- > us...@lists.sourceforge.net > > -- Come build with us! The BlackBerry(R) Developer Conference in SF, CA is the only developer event you need to attend this year. Jumpstart your developing skills, take BlackBerry mobile applications to market and stay ahead of the curve. Join us from November 9 - 12, 2009. Register now! http://p.sf.net/sfu/devconference ___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
[PyMOL] Error loading pymol
Hi, I am running the same version of pymol, 1.2, compiled from source in 2 different machines, but both with pentium multicore processors, linux x86_64 (Opensuse distribution on both). But on one of them, my laptom, it happens the following error when I try to go to "help" or either if I try the plugins (such as APBS module): /usr/local/bin/pymol: line 2: 12037 Segmentation fault /usr/bin/python /usr/local/lib64/python2.6/site-packages/pymol/__init__.py "$@" The line changes depending on the module I try to load. Any ideas??? It is quite important to me to load some plugins for my teaching!! Hugo -- Hugo G. de Teran, PhD. "Parga Pondal" Research fellow Fundación Pública Galega de Medicina Xenómica - SERGAS Santiago de Compostela (SPAIN) Phone +34 981563100 ext 13873 e-mail:hugo.te...@usc.es http://web.usc.es/~hugogdt -- Come build with us! The BlackBerry(R) Developer Conference in SF, CA is the only developer event you need to attend this year. Jumpstart your developing skills, take BlackBerry mobile applications to market and stay ahead of the curve. Join us from November 9 - 12, 2009. Register now! http://p.sf.net/sfu/devconference ___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
