Re: [PyMOL] PyMOL-users Digest, Vol 5, Issue 22

[Andreas Forster]

Oh, works like a charm.

(If you're a bit more descriptive about your problem, we can help you 
better.)



Andreas


surendra negi wrote:

Is there any 32 bit version of pymol?  I am unable to install it  in XP

- Original Message 

[PyMOL] color in pymol

[shivesh kumar]

Dear all,
How can I use the color option in the Setting
menu(Edit all) to get more color in the cartoon.Thanx.
Shivesh

shivesh


shivesh
 
-
Get your email and see which of your friends are online - Right on the  new 
Yahoo.com

Re: [PyMOL] color in pymol

[DeLano Scientific]

> How can I use the color option in the Setting menu(Edit all) 
> to get more color in the cartoon.Thanx.

What do you mean by "more color in the cartoon"?  You set the cartoon color
independently using a command such as:

set cartoon_color, color-name

for example

set cartoon_color, red

Cheers,

DeLano Scientific LLC
Email Support Services 

> -Original Message-
> From: pymol-users-boun...@lists.sourceforge.net 
> [mailto:pymol-users-boun...@lists.sourceforge.net] On Behalf 
> Of shivesh kumar
> Sent: Saturday, October 28, 2006 4:33 AM
> To: PyMOL-users@lists.sourceforge.net
> Subject: [PyMOL] color in pymol
> 
> Dear all,
> How can I use the color option in the Setting menu(Edit all) 
> to get more color in the cartoon.Thanx.
> Shivesh
> 
> shivesh
> 
> 
> shivesh
> 
> 
> 
> Get your email and see which of your friends are online - 
> Right on the new Yahoo.com 
>   
> 

Re: [PyMOL] color in pymol

[andreas]

Hey Shivesh,

you can get more color in your cartoons by coloring every residue
differently.

color red, i. 20
color blue, i. 21
color yellow, i. 22

Don't pay too much attention to the menus.  They're really just there so
traditional Mac and Windows users to get scared when they start using
PyMOL.  You will find that the command line does everything quicker and
easier.


Andreas


>> -Original Message-
>> From: pymol-users-boun...@lists.sourceforge.net
>> [mailto:pymol-users-boun...@lists.sourceforge.net] On Behalf
>> Of shivesh kumar
>> Sent: Saturday, October 28, 2006 4:33 AM
>> To: PyMOL-users@lists.sourceforge.net
>> Subject: [PyMOL] color in pymol
>>
>> Dear all,
>> How can I use the color option in the Setting menu(Edit all)
>> to get more color in the cartoon.Thanx.
>> Shivesh
>>
>> shivesh
>>

[PyMOL] question about domain movement

[Qun Wan]

Hi,
I have built two models from one protein molecule with the different
nucleotides bound: one is ATP, one is ADP. Their overall structures
are similar except that a few secondary structure domains shift. For
example, alpha4 helix has move left for about 1.2Å and rotate about
4º.
Could I use pymol to accurately measure the shift, not just give
rough approximation?

Thanks!