[Freesurfer] qdec - ERROR: CSDread():
Dear expert, I got an error while clicking the Monte Carlo simulation in qdec. I am using Mac 10.6 and qdec version 1.4, freesufer 5.1 Have no clue why it always gives this error in the terminal: mri_surfcluster --in /Longitudinal_template2/qdec/lh-thick-rate-10mm-group/lh-Avg-Intercept-long.thickness-rate/sig.mgh --csd /Applications/freesurfer/average/mult-comp-cor/fsaverage/lh/cortex/fwhm9/abs/th20/mc-z.csd --mask /Longitudinal_template2/qdec/lh-thick-rate-10mm-group/mask.mgh --cwsig /Longitudinal_template2/qdec/lh-thick-rate-10mm-group/lh-Avg-Intercept-long.thickness-rate/mc-z.abs.th20.sig.cluster.mgh --vwsig /Longitudinal_template2/qdec/lh-thick-rate-10mm-group/lh-Avg-Intercept-long.thickness-rate/mc-z.abs.th20.sig.vertex.mgh --sum /Longitudinal_template2/qdec/lh-thick-rate-10mm-group/lh-Avg-Intercept-long.thickness-rate/mc-z.abs.th20.sig.cluster.summary --ocn /Longitudinal_template2/qdec/lh-thick-rate-10mm-group/lh-Avg-Intercept-long.thickness-rate/mc-z.abs.th20.sig.ocn.mgh --oannot /Longitudinal_template2/qdec/lh-thick-rate-10mm-group/lh-Avg-Intercept-long.thickness-rate/mc-z.abs.th20.sig.ocn.annot --csdpdf /Longitudinal_template2/qdec/lh-thick-rate-10mm-group/lh-Avg-Intercept-long.thickness-rate/mc-z.abs.th20.pdf.dat --annot aparc --cwpvalthresh 0.05 --surf white ERROR: CSDread(): could not open /Applications/freesurfer/average/mult-comp-cor/fsaverage/lh/cortex/fwhm9/abs/th20/mc-z.csd ERROR! Very appreciate for the help ! Thank you in advance, Natalia ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
[Freesurfer] Error in qdec longitudinal 5.1
Dear list, I got an error after following the newer version of the longitudinal stream 5.1. long_mris_slopes worked without problems for my data which was longtudinally processed in 4.5. I also split the qdec.table to the cross for being able to be loaded in qdec GUI. Somehow I got the error that the Templatesubxx/surf/xh.thickness.fwhm.xx.fsaverage.mgh. I went back to check inside the Templatesubxx/surf has only the xh.long.thickness-xxx.fwhmx.fsaverage.mgh Is there something I am missing? Thanks a lot for the help ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
[Freesurfer] longitudinal version
Dear list, I have a question about the longitudinal stream´s version. I used Freesurfer 4.5 and followed the longitudinal tutorials (the tutorials "before" June 2011) for my data. I saw on the updated version, there are scripts which can do the post-process longitudinal data, like long_mris_slopes, long_stats_slopes, long_qdec_table. Can I use these scripts to do the stats even though I used version 4.5 for the longitudinal process? Thanks for the help ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
