[Freesurfer] Freeview Save and Go-to Point Issue
Hi, I am experiencing an issue where I try to save a point in an inflated brain view and go to the saved point on my brainmask/wm volume and the point is jumping to a space off of the brain. This happens consistently. Am I doing something wrong or is this a bug? Thank you, Alexander ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Re: [Freesurfer] Freeview Save and Go-to Point Issue
I was strictly using the freeview GUI and not tksurfer so I didn¹t notice any error messages. Alexander On 1/27/14, 12:10 PM, "Bruce Fischl" wrote: >Hi Alexander > >do you see any error messages in the terminal window where you started >tksurfer? > >Bruce > > >On Mon, 27 Jan 2014, Denker, >Alexander (NIH/NIMH) [F] wrote: > >> Hi, >> >> I am experiencing an issue where I try to save a point in an inflated >>brain view and go to the saved point on my brainmask/wm volume and the >>point is jumping to a space off of the brain. This happens consistently. >>Am I doing something wrong or is this a bug? >> >> Thank you, >> Alexander >> >> ___ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> > > >The information in this e-mail is intended only for the person to whom it >is >addressed. If you believe this e-mail was sent to you in error and the >e-mail >contains patient information, please contact the Partners Compliance >HelpLine at >http://www.partners.org/complianceline . If the e-mail was sent to you in >error >but does not contain patient information, please contact the sender and >properly >dispose of the e-mail. > ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Re: [Freesurfer] Freeview Save and Go-to Point Issue
It seems to be happening with all of our volumes. On 1/27/14, 1:23 PM, "Ruopeng Wang" wrote: >Would it be possible to share the data that shows this issue? Or does it >happen to any volume you are viewing with freeview? > >Ruopeng > > >On 01/27/2014 12:47 PM, Denker, Alexander (NIH/NIMH) [F] wrote: >> I was strictly using the freeview GUI and not tksurfer so I didn¹t >>notice >> any error messages. >> >> >> Alexander >> >> On 1/27/14, 12:10 PM, "Bruce Fischl" wrote: >> >>> Hi Alexander >>> >>> do you see any error messages in the terminal window where you started >>> tksurfer? >>> >>> Bruce >>> >>> >>> On Mon, 27 Jan 2014, Denker, >>> Alexander (NIH/NIMH) [F] wrote: >>> >>>> Hi, >>>> >>>> I am experiencing an issue where I try to save a point in an inflated >>>> brain view and go to the saved point on my brainmask/wm volume and the >>>> point is jumping to a space off of the brain. This happens >>>>consistently. >>>> Am I doing something wrong or is this a bug? >>>> >>>> Thank you, >>>> Alexander >>>> >>>> ___ >>>> Freesurfer mailing list >>>> Freesurfer@nmr.mgh.harvard.edu >>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>> >>>> >>>> >>> >>> The information in this e-mail is intended only for the person to whom >>>it >>> is >>> addressed. If you believe this e-mail was sent to you in error and the >>> e-mail >>> contains patient information, please contact the Partners Compliance >>> HelpLine at >>> http://www.partners.org/complianceline . If the e-mail was sent to you >>>in >>> error >>> but does not contain patient information, please contact the sender and >>> properly >>> dispose of the e-mail. >>> >> >> ___ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> > ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
[Freesurfer] Erasing, adding voxels in Freeview
Hi all, This is probably a very elementary error in my use of Freeview, but I have been having trouble adding voxels to scans. I set the eraser value to "0", but when I draw, the voxel still shows up as a black box instead of grey. Am I not setting the right values or am I just in the wrong viewing mode? Thanks! Alexander ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Re: [Freesurfer] Erasing, adding voxels in Freeview
So if I keep the value of the eraser at "1" then what do I need to change to add the voxels? It seems that no matter what value I put for drawing/erasing, I click and get a black box drawn on the screen. It seems that I am not combining button-clicks or values for the eraser and adding correctly. Thank you Sent with Good (www.good.com) -Original Message- From: Louis Nicholas Vinke [vi...@nmr.mgh.harvard.edu<mailto:vi...@nmr.mgh.harvard.edu>] Sent: Monday, February 10, 2014 02:04 PM Eastern Standard Time To: Denker, Alexander (NIH/NIMH) [F] Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Erasing, adding voxels in Freeview Hi Alexander, If you are editing FS recons, then you should keep the eraser value set to "1" so that the edits can be detected by recon-all. -Louis On Mon, 10 Feb 2014, Ruopeng Wang wrote: > Hi Alexander, > > Eraser value is used for erasing. Brush value is used for drawing. To > erase, just hold shift key and press left mouse button. > > Best, > Ruopeng > > On 02/10/2014 10:23 AM, Denker, Alexander (NIH/NIMH) [F] wrote: >> Hi all, >> >> This is probably a very elementary error in my use of Freeview, but I have >> been having trouble adding voxels to scans. I set the eraser value to "0", >> but when I draw, the voxel still shows up as a black box instead of grey. Am >> I not setting the right values or am I just in the wrong viewing mode? >> >> Thanks! >> Alexander >> >> ___ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> > > ___ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
