Dear Freesurfer Experts,
I recently installed freesurfer. In my first subject, it did the largest
part of the calculations (recon-all all) but ended up with the following
error:
#...@# Cortical ribbon mask Tue May 12 22:29:18 CEST 2009
/Applications/freesurfer/subjects/sleep001_RJ/mri
\n mris_volmask --label_left_white 2 --label_left_ribbon 3
--label_right_white 41 --label_right_ribbon 42 --save_ribbon
--save_distance sleep001_RJ \n
dyld: Library not loaded: /usr/X11/lib/libfontconfig.1.dylib
Referenced from:
/Applications/freesurfer/lib/vtk/lib/vtk-5.2/libvtkHybrid.5.2.dylib
Reason: Incompatible library version: libvtkHybrid.5.2.dylib requires
version 5.0.0 or later, but libfontconfig.1.dylib provides version 3.0.0
Trace/BPT trap
Darwin hpsystem.kispi.int 9.2.2 Darwin Kernel Version 9.2.2: Tue Mar 4
21:17:34 PST 2008; root:xnu-1228.4.31~1/RELEASE_I386 i386
recon-all exited with ERRORS at Tue May 12 22:29:20 CEST 2009
How can I fix this incompatibility?
Best regards
Andreas
Error log:
SUBJECT sleep001_RJ
DATE Tue May 12 22:29:20 CEST 2009
USER EGI
HOST hpsystem.kispi.int
PROCESSOR i386
OS Darwin
Darwin hpsystem.kispi.int 9.2.2 Darwin Kernel Version 9.2.2: Tue Mar 4
21:17:34 PST 2008; root:xnu-1228.4.31~1/RELEASE_I386 i386
$Id: recon-all,v 1.133.2.42 2009/04/01 15:53:05 nicks Exp $
/Applications/freesurfer/bin/recon-all
PWD /Applications/freesurfer/subjects/sleep001_RJ/mri
CMD mris_volmask --label_left_white 2 --label_left_ribbon 3
--label_right_white 41 --label_right_ribbon 42 --save_ribbon
--save_distance sleep001_RJ
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