[Freesurfer] Invalid license key error for Freesurfer 5.1
External Email - Use Caution Hello Freesurfer developers, Right now I am trying to use Freesurfer 5.1.0. But the software showed ERROR “Invalid FreeSurfer license key found in license file”. We tried to apply license online, however, the license provided online is now for 6.0.0 version and it seems not applicable for 5.1.0 since I still got the same error message as before. May I ask how to get the licnese of 5.1.0? Thanks for your help! -- Best Regards, An Lijun ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
[Freesurfer] Invalid License Key Error for Freesurfer 5.1
External Email - Use Caution Hello Freesurfer developers, Right now I am trying to use Freesurfer 5.1.0. But the software showed ERROR “Invalid FreeSurfer license key found in license file”. We tried to apply license online, however, the license provided online is now for 6.0.0 version and it seems not applicable for 5.1.0 since I still got the same error message as before. May I ask how to get the licnese of 5.1.0? Thanks for your help! --- Best Regards, An Lijun ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
[Freesurfer] Invalid Key Error for Freesurfer 5.1
External Email - Use Caution Dear Freesurfer experts, Right now I am trying to use Freesurfer 5.1.0. But the software showed ERROR “Invalid FreeSurfer license key found in license file”. We tried to apply license online, however, the license provided online is now for 6.0.0 version and it seems not applicable for 5.1.0 since I still got the same error message as before. May I ask how to get the licnese of 5.1.0? The tricky part is the format of lecense now I get from Fresssurfer is different from the old one in Freesurfer 5.1. New License I get(call license.txt): x...@gmail.com<mailto:x...@gmail.com> 43508 *CRBDdLNbgmws FSOkaDD5AxOQk Old License(call .license): x...@gmail.com<mailto:x...@gmail.com> 39689 *1 PS: I tried to use `dos2unix` to transfer the license to unix format, but it seems no help. Thanks for your help! -- Best Regards, An Lijun ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
[Freesurfer] Invaild Key Error for Freesurfer 5.1
External Email - Use Caution Dear Freesurfer experts, Right now I am trying to use Freesurfer 5.1.0. But the software showed ERROR “Invalid FreeSurfer license key found in license file”. We tried to apply license online, however, the license provided online is now for 6.0.0 version and it seems not applicable for 5.1.0 since I still got the same error message as before. May I ask how to get the licnese of 5.1.0? The tricky part is the format of lecense now I get from Fresssurfer is different from the old one in Freesurfer 5.1. New License I get(call license.txt): x...@gmail.com<mailto:x...@gmail.com> 43508 *CRBDdLNbgmws FSOkaDD5AxOQk Old License(call .license): x...@gmail.com<mailto:x...@gmail.com> 39689 *1 PS: I tried to use `dos2unix` to transfer the license to unix format, but it seems no help. Thanks for your help! -- Best Regards, An Lijun ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
[Freesurfer] Volume (WM Parcellation) of RightCerebralCortex--Freesurfer 6.0
External Email - Use Caution Dear Freesurfer experts, I am trying to use ADNI MERGE R package to get 'wholebrain' volume. It requires CerebralCortex. The information I get from ADNI merge is "Volume (WM Parcellation) of RightCerebralCortex". But when I ran Freesurfer reconall 6.0, I could not find CerebralCortex under 'stats' folder, do you know where it could be? Thanks so much. Best Regards, An Lijun ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
[Freesurfer] Volume (WM Parcellation) of RightCerebralCortex -- Freesurfer 6.0
External Email - Use Caution Dear Freesurfer experts, I am trying to use ADNI MERGE R package to get 'wholebrain' volume. It requires CerebralCortex. The information I get from ADNI merge is "Volume (WM Parcellation) of RightCerebralCortex". But when I ran Freesurfer reconall 6.0, I could not find CerebralCortex under 'stats' folder, do you know where it could be? Thanks so much. Best Regards, An Lijun ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Re: [Freesurfer] Volume (WM Parcellation) of RightCerebralCortex--Freesurfer 6.0
External Email - Use Caution Thanks for your reply! You mean LeftCerebralCortex is actually lhCortex in aseg.stats, right? Best Regards, An Lijun Greve, Douglas N.,Ph.D. mailto:dgr...@mgh.harvard.edu>> 于2019年11月19日周二 上午2:20写道： You can find it in aseg.stats under # Measure lhCortex, lhCortexVol, Left hemisphere cortical gray matter volume, 272816.537999, mm^3 # Measure rhCortex, rhCortexVol, Right hemisphere cortical gray matter volume, 260016.082731, mm^3 # Measure Cortex, CortexVol, Total cortical gray matter volume, 532832.620730, mm^3 On 11/13/19 11:54 PM, An Lijun wrote: > > External Email - Use Caution > > Dear Freesurfer experts, > > I am trying to use ADNI MERGE R package to get 'wholebrain' volume. > > It requires CerebralCortex. The information I get from > ADNI merge is "*Volume (WM Parcellation) of RightCerebralCortex*". > > But when I ran Freesurfer reconall 6.0, I could not > find CerebralCortex under 'stats' folder, do you know > where it could be? Thanks so much. > > Best Regards, > An Lijun > > ___ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu<mailto:Freesurfer@nmr.mgh.harvard.edu> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu<mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Re: [Freesurfer] extract lgi
External Email - Use Caution Dear Yanyan, Actually you could refer to the freesurfer tutorial firstly. Best Regards, An Lijun Lin Yanyan mailto:linyan...@outlook.com>> 于2019年11月26日周二 下午12:49写道： External Email - Use Caution Hello, I have a question about lgi computing and extracting. I had run recon-all -s -all, and there are lh.pail/rh.pail under each subject, then what should I do? ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu<mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Re: [Freesurfer] New UCSF Cross-Sectional FreeSurfer (6.0) data
External Email - Use Caution Hi Hasan Al MarzouqiBest Regards, 1. You need to register firstly by this link. http://adni.loni.usc.edu/data-samples/access-data/ 2. After you get apporval, you could log in to https://ida.loni.usc.edu/login.jsp?project=ADNI&page=HOME 3. After log in to loni and you could see click the adni repo and access data. As far as I know, ADNI only released partial Freesurfer 6.0 data (ADNI 3 maybe I could not remember clearly) An Lijun Hasan Al Marzouqi mailto:hasan.almarzo...@ku.ac.ae>> 于2020年2月3日周一 下午12:52写道： External Email - Use Caution I’m trying to access the ADNI/FreeSurfer dataset mentioned in the link below. How can I download it the directions are not clear. How can I get to the DOWNLOAD | Imaging | MR Image Analysis section of the ADNI archive? http://adni.loni.usc.edu/new-ucsf-cross-sectional-freesurfer-6-0-data-available/ Hasan Al Marzouqi Assistant Professor Electrical and Computer Engineering [X] P O Box 127788, , UAE T +971 2 6075090 F +971 2 447 2442 hasan.almarzo...@ku.ac.ae ku.ac.ae<http://www.ku.ac.ae/> [X] [X]<http://bit.ly/mbzirc> <http://bit.ly/KUranking16> <http://bit.ly/KUranking16> ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu<mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
