[Freesurfer] Aseg stats question

[Rosalia Dacosta Aguayo]

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Dear Freesurfer team,

I have found a warning about not using amygdala, hippocampus and brainstem
volumes from asegstats file.

I wonder if that is true.

Best wishes,

Rosie
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[Freesurfer] Additional question in "SynthSR and SynthSeg" FreeSurfer list - RE. 2022.12.15

[Yoonho Hwang]

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Dear Douglas N. Greve,

Thank you for quickly replying.
Although I ask many questions, To reply to the mail kindly and quickly is
very grateful for me.
It became clear how to analyze it. Nevertheless, *there is an additional
question*.

Q) 4. When I process T1WI data with Freesurfer dev version, is it installed
based on the new version in HPC per version update for freesurfer?
A) I don't know what you mean. hcp=?

*Additional question)*
HPC is high-performance computing (computer cluster).
I knew that in order to use the latest SynthSR and SynthSeg, I had to use
the latest freesurfer developer version, and the developer version
continues to be updated on a daily basis.
When the freesurfer development version is updated, should I repeat the
process of removing and re-installing the freesurfer development version to
use the latest SynthSR and SynthSeg?
And then, can you tell me what I need to do to measure the brain
morphological property (e.g., cortical thickness and volume, etc) after
using synthSR and synthSeg?

Thank you very much.


Best regards,
Yoonho

-- 
*Hwang, Yoonho*
*Research professor*
*Institute of Human Genomic Study,*
*College of Medicine, Korea University*

*#123, Jeokgeum-ro, Danwon-gu, Ansan-si, Gyeonggi-do, **15355, Republic of
Korea.*

*Email: ken.lmsta...@gmail.com *
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[Freesurfer] mri_segstats error:

[Brooklyn Wright]

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Hello Freesurfer Developers,

I am currently trying to perform reconstructions on 1mm^3 T1 data and am 
finding this error towards the end of the processing;


\n mri brainvol _stats cor. 15 \n

Segmentation fault

Darwin UW-C02L2083DNMP 18.7.0 Darwin Kernel Version 18.7.0: Tue Jun 22 19:37:08 
PDT 2021; root:xnu-4903.278.79-1/RELEASE_X86_ 64 x86_64

recon-al1 -s cor 15 exited with ERRORS at Tue Dec 20 11:16:05 AEDT 2022

Do you know why this is happening and how to fix this?

Kindest,
Brooklyn.
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