FreeBSD ports you maintain which are out of date
Dear port maintainer, The portscout new distfile checker has detected that one or more of your ports appears to be out of date. Please take the opportunity to check each of the ports listed below, and if possible and appropriate, submit/commit an update. If any ports have already been updated, you can safely ignore the entry. You will not be e-mailed again for any of the port/version combinations below. Full details can be found at the following URL: http://portscout.freebsd.org/pyt...@freebsd.org.html Port| Current version | New version +-+ devel/py-pytest | 4.5.0 | 6.1.0 +-+ If any of the above results are invalid, please check the following page for details on how to improve portscout's detection and selection of distfiles on a per-port basis: http://portscout.freebsd.org/info/portscout-portconfig.txt Reported by:portscout! ___ freebsd-python@freebsd.org mailing list https://lists.freebsd.org/mailman/listinfo/freebsd-python To unsubscribe, send any mail to "freebsd-python-unsubscr...@freebsd.org"
[Bug 249337] [meta] Ports broken by Python 2.7 End-of-Life and removal
https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=249337 Bug 249337 depends on bug 249759, which changed state. Bug 249759 Summary: science/silo: depends on python 2.x https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=249759 What|Removed |Added Status|New |Closed Resolution|--- |FIXED -- You are receiving this mail because: You are the assignee for the bug. ___ freebsd-python@freebsd.org mailing list https://lists.freebsd.org/mailman/listinfo/freebsd-python To unsubscribe, send any mail to "freebsd-python-unsubscr...@freebsd.org"
[Bug 249936] www/py-notebook: not working in jail, "Kernel starting, please wait..."
https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=249936
Bug ID: 249936
Summary: www/py-notebook: not working in jail, "Kernel
starting, please wait..."
Product: Ports & Packages
Version: Latest
Hardware: amd64
OS: Any
Status: New
Severity: Affects Many People
Priority: ---
Component: Individual Port(s)
Assignee: pyt...@freebsd.org
Reporter: leonardo.r...@informemedico.com.ar
Flags: maintainer-feedback?(pyt...@freebsd.org)
Assignee: pyt...@freebsd.org
Hi, I'm trying to run py37-notebook-6.0.3_2 on a FreeBSD 12.1 Jail. I've been
trying to make it work since more than a week ago without success.
I installed it first using `pkg install` and when I found this problem I tried
with `pip3 install `, but both methods ends with the same problem.
After installing and making some changes in the config file
`/home/jupyter/.jupyter/jupyter_notebook_config.py` I can open it from a web
browser. The changes are these:
c.NotebookApp.ip ='*'
c.NotebookApp.open_browser = False
c.NotebookApp.notebook_dir = '/tmp'
c.NotebookApp.port =
I can point from another machine using `http://192.168.0.111:`, and get
this:
So everything seems to be working...until I try do execute a simple calc like
`1+1` or `print("hello world")`. When I do that and press ctrl+r
there's a `Kernel starting, please wait...`, and after a while, in the server's
console there's this:
[I 16:23:09.145 NotebookApp] Creating new notebook in
/usr/local/lib/python3.7/site-packages/jupyter_client/connect.py:164:
RuntimeWarning: Failed to set sticky bit on
'/usr/home/jupyter/.local/share/jupyter/runtime/kernel-67e1b082-cc4e-4b25-b5a5-a38d13fd717f.json':
[Errno 79] Inappropriate file type or format:
'/usr/home/jupyter/.local/share/jupyter/runtime/kernel-67e1b082-cc4e-4b25-b5a5-a38d13fd717f.json'
Probably not a big deal, but runtime files may be cleaned up periodically.
RuntimeWarning,
[I 16:23:10.143 NotebookApp] Kernel started:
67e1b082-cc4e-4b25-b5a5-a38d13fd717f
[W 16:23:10.192 NotebookApp] 404 GET
/nbextensions/widgets/notebook/js/extension.js?v=20200926161340 (192.168.0.110)
0.99ms
referer=http://192.168.0.111:/notebooks/Untitled4.ipynb?kernel_name=python3
/usr/local/lib/python3.7/site-packages/jupyter_client/connect.py:164:
RuntimeWarning: Failed to set sticky bit on
'/usr/home/jupyter/.local/share/jupyter/runtime/kernel-67e1b082-cc4e-4b25-b5a5-a38d13fd717f.json':
[Errno 79] Inappropriate file type or format:
'/usr/home/jupyter/.local/share/jupyter/runtime/kernel-67e1b082-cc4e-4b25-b5a5-a38d13fd717f.json'
Probably not a big deal, but runtime files may be cleaned up periodically.
RuntimeWarning,
[I 16:23:17.731 NotebookApp] Saving file at /Untitled3.ipynb
[W 16:23:31.238 NotebookApp] Replacing stale connection:
67e1b082-cc4e-4b25-b5a5-a38d13fd717f:f20bd23a2dc0450c8f9db79d7eb82a33
[W 16:23:54.305 NotebookApp] Replacing stale connection:
67e1b082-cc4e-4b25-b5a5-a38d13fd717f:f20bd23a2dc0450c8f9db79d7eb82a33
[W 16:24:10.227 NotebookApp] Timeout waiting for kernel_info reply from
67e1b082-cc4e-4b25-b5a5-a38d13fd717f
[I 16:24:10.234 NotebookApp] Starting buffering for
67e1b082-cc4e-4b25-b5a5-a38d13fd717f:f20bd23a2dc0450c8f9db79d7eb82a33
[I 16:24:10.235 NotebookApp] Restoring connection for
67e1b082-cc4e-4b25-b5a5-a38d13fd717f:f20bd23a2dc0450c8f9db79d7eb82a33
[jupyter@jupyterlab ~]$ jupyter --version
jupyter core : 4.6.3
jupyter-notebook : 6.0.3
qtconsole: not installed
ipython : 7.16.1
ipykernel: 5.3.0
jupyter client : 6.1.3
jupyter lab : not installed
nbconvert: 5.6.1
ipywidgets : not installed
nbformat : 5.0.7
traitlets: 4.3.3
By searching on the web I found others have a similar issue with `tornado 6`,
but this installation is running `py37-tornado-5.1.1` which is installed
automatically by `pkg install notebook`.
Can anyone help me with this?
--
You are receiving this mail because:
You are the assignee for the bug.
___
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maintainer-feedback requested: [Bug 249936] www/py-notebook: not working in jail, "Kernel starting, please wait..."
Bugzilla Automation has asked freebsd-python (Nobody)
for maintainer-feedback:
Bug 249936: www/py-notebook: not working in jail, "Kernel starting, please
wait..."
https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=249936
--- Description ---
Hi, I'm trying to run py37-notebook-6.0.3_2 on a FreeBSD 12.1 Jail. I've been
trying to make it work since more than a week ago without success.
I installed it first using `pkg install` and when I found this problem I tried
with `pip3 install `, but both methods ends with the same problem.
After installing and making some changes in the config file
`/home/jupyter/.jupyter/jupyter_notebook_config.py` I can open it from a web
browser. The changes are these:
c.NotebookApp.ip ='*'
c.NotebookApp.open_browser = False
c.NotebookApp.notebook_dir = '/tmp'
c.NotebookApp.port =
I can point from another machine using `http://192.168.0.111:`, and get
this:
So everything seems to be working...until I try do execute a simple calc like
`1+1` or `print("hello world")`. When I do that and press ctrl+r
there's a `Kernel starting, please wait...`, and after a while, in the server's
console there's this:
[I 16:23:09.145 NotebookApp] Creating new notebook in
/usr/local/lib/python3.7/site-packages/jupyter_client/connect.py:164:
RuntimeWarning: Failed to set sticky bit on
'/usr/home/jupyter/.local/share/jupyter/runtime/kernel-67e1b082-cc4e-4b25-b5a5-
a38d13fd717f.json':
[Errno 79] Inappropriate file type or format:
'/usr/home/jupyter/.local/share/jupyter/runtime/kernel-67e1b082-cc4e-4b25-b5a5-
a38d13fd717f.json'
Probably not a big deal, but runtime files may be cleaned up periodically.
RuntimeWarning,
[I 16:23:10.143 NotebookApp] Kernel started:
67e1b082-cc4e-4b25-b5a5-a38d13fd717f
[W 16:23:10.192 NotebookApp] 404 GET
/nbextensions/widgets/notebook/js/extension.js?v=20200926161340 (192.168.0.110)
0.99ms
referer=http://192.168.0.111:/notebooks/Untitled4.ipynb?kernel_name=python3
/usr/local/lib/python3.7/site-packages/jupyter_client/connect.py:164:
RuntimeWarning: Failed to set sticky bit on
'/usr/home/jupyter/.local/share/jupyter/runtime/kernel-67e1b082-cc4e-4b25-b5a5-
a38d13fd717f.json':
[Errno 79] Inappropriate file type or format:
'/usr/home/jupyter/.local/share/jupyter/runtime/kernel-67e1b082-cc4e-4b25-b5a5-
a38d13fd717f.json'
Probably not a big deal, but runtime files may be cleaned up periodically.
RuntimeWarning,
[I 16:23:17.731 NotebookApp] Saving file at /Untitled3.ipynb
[W 16:23:31.238 NotebookApp] Replacing stale connection:
67e1b082-cc4e-4b25-b5a5-a38d13fd717f:f20bd23a2dc0450c8f9db79d7eb82a33
[W 16:23:54.305 NotebookApp] Replacing stale connection:
67e1b082-cc4e-4b25-b5a5-a38d13fd717f:f20bd23a2dc0450c8f9db79d7eb82a33
[W 16:24:10.227 NotebookApp] Timeout waiting for kernel_info reply from
67e1b082-cc4e-4b25-b5a5-a38d13fd717f
[I 16:24:10.234 NotebookApp] Starting buffering for
67e1b082-cc4e-4b25-b5a5-a38d13fd717f:f20bd23a2dc0450c8f9db79d7eb82a33
[I 16:24:10.235 NotebookApp] Restoring connection for
67e1b082-cc4e-4b25-b5a5-a38d13fd717f:f20bd23a2dc0450c8f9db79d7eb82a33
[jupyter@jupyterlab ~]$ jupyter --version
jupyter core : 4.6.3
jupyter-notebook : 6.0.3
qtconsole: not installed
ipython : 7.16.1
ipykernel: 5.3.0
jupyter client : 6.1.3
jupyter lab : not installed
nbconvert: 5.6.1
ipywidgets : not installed
nbformat : 5.0.7
traitlets: 4.3.3
By searching on the web I found others have a similar issue with `tornado 6`,
but this installation is running `py37-tornado-5.1.1` which is installed
automatically by `pkg install notebook`.
Can anyone help me with this?
___
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[Bug 249936] www/py-notebook: not working in jail, "Kernel starting, please wait..."
https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=249936 Danilo G. Baio changed: What|Removed |Added Flags|maintainer-feedback?(python |maintainer-feedback+ |@FreeBSD.org) | Status|New |Open CC||db...@freebsd.org --- Comment #1 from Danilo G. Baio --- Hi. It seems you are using packages from the quarterly branch. Could you try the latest repo? It has some updates on jupyter-notebook, ipython and traitlets. More details here: https://www.freebsd.org/doc/handbook/pkgng-intro.html#quarterly-latest-branch If the issue still occurs, we'll need to investigate more. And the quarterly repo will be updated soon, finishing this quarter in a few days. -- You are receiving this mail because: You are the assignee for the bug. ___ freebsd-python@freebsd.org mailing list https://lists.freebsd.org/mailman/listinfo/freebsd-python To unsubscribe, send any mail to "freebsd-python-unsubscr...@freebsd.org"
[Bug 249337] [meta] Ports broken by Python 2.7 End-of-Life and removal
https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=249337 Bug 249337 depends on bug 249534, which changed state. Bug 249534 Summary: graphics/opencolorio: update to git snapshot https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=249534 What|Removed |Added Status|New |Closed Resolution|--- |FIXED -- You are receiving this mail because: You are the assignee for the bug. ___ freebsd-python@freebsd.org mailing list https://lists.freebsd.org/mailman/listinfo/freebsd-python To unsubscribe, send any mail to "freebsd-python-unsubscr...@freebsd.org"
[Bug 249337] [meta] Ports broken by Python 2.7 End-of-Life and removal
https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=249337 Bug 249337 depends on bug 249341, which changed state. Bug 249341 Summary: devel/gobject-introspection: update to 1.66.0 https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=249341 What|Removed |Added Status|New |Closed Resolution|--- |FIXED -- You are receiving this mail because: You are the assignee for the bug. ___ freebsd-python@freebsd.org mailing list https://lists.freebsd.org/mailman/listinfo/freebsd-python To unsubscribe, send any mail to "freebsd-python-unsubscr...@freebsd.org"
[Bug 249490] security/py-acme security/py-certbot* : Update to 1.8.0
https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=249490 Danilo G. Baio changed: What|Removed |Added Assignee|pyt...@freebsd.org |db...@freebsd.org CC||db...@freebsd.org -- You are receiving this mail because: You are the assignee for the bug. ___ freebsd-python@freebsd.org mailing list https://lists.freebsd.org/mailman/listinfo/freebsd-python To unsubscribe, send any mail to "freebsd-python-unsubscr...@freebsd.org"
Problem reports for pyt...@freebsd.org that need special attention
To view an individual PR, use: https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=(Bug Id). The following is a listing of current problems submitted by FreeBSD users, which need special attention. These represent problem reports covering all versions including experimental development code and obsolete releases. Status |Bug Id | Description +---+--- Open|205308 | devel/py-pip and devel/py-virtualenv don't aggree Open|240343 | x11-themes/plasma5-breeze-gtk: Fails to build if Open|242896 | lang/python*: Fail to package in poudriere (testp Open|245747 | lang/pypy: Cleanup In Progress |241416 | [NEW PORT] lang/python38 Open|243937 | lang/python38: Fails to package in certain condit Open|224115 | devel/py-babel directory name != port name New |231555 | Mk/Uses/python.mk: Add USE_PYTHON=pytest 8 problems total for which you should take action. ___ freebsd-python@freebsd.org mailing list https://lists.freebsd.org/mailman/listinfo/freebsd-python To unsubscribe, send any mail to "freebsd-python-unsubscr...@freebsd.org"
[Bug 249936] www/py-notebook: not working in jail, "Kernel starting, please wait..."
https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=249936 --- Comment #2 from Leonardo M. Ramé --- Hi Danilo, I created a new jail, with the latest repo, which containts py37-notebook vestion 6.1.4, instead of 6.0.3_2 and the problem is still there: [I 18:23:42.510 NotebookApp] Serving notebooks from local directory: /tmp [I 18:23:42.510 NotebookApp] Jupyter Notebook 6.1.4 is running at: [I 18:23:42.510 NotebookApp] http://jupyterlab:/ [I 18:23:42.510 NotebookApp] Use Control-C to stop this server and shut down all kernels (twice to skip confirmation). [W 18:23:46.730 NotebookApp] 404 GET /notebooks/Untitled.ipynb?kernel_name=python3 (192.168.0.110): No such file or directory: Untitled.ipynb [W 18:23:46.750 NotebookApp] 404 GET /notebooks/Untitled.ipynb?kernel_name=python3 (192.168.0.110) 20.28ms referer=http://192.168.0.111:/tree? [I 18:23:52.054 NotebookApp] Creating new notebook in /usr/local/lib/python3.7/site-packages/jupyter_client/connect.py:164: RuntimeWarning: Failed to set sticky bit on '/usr/home/jupyter/.local/share/jupyter/runtime/kernel-b4649028-a681-47b3-83fb-0d1c22625c6f.json': [Errno 79] Inappropriate file type or format: '/usr/home/jupyter/.local/share/jupyter/runtime/kernel-b4649028-a681-47b3-83fb-0d1c22625c6f.json' Probably not a big deal, but runtime files may be cleaned up periodically. RuntimeWarning, [I 18:23:53.134 NotebookApp] Kernel started: b4649028-a681-47b3-83fb-0d1c22625c6f, name: python3 [W 18:23:53.136 NotebookApp] 404 GET /nbextensions/widgets/notebook/js/extension.js?v=20200927182342 (192.168.0.110) 0.89ms referer=http://192.168.0.111:/notebooks/Untitled.ipynb?kernel_name=python3 /usr/local/lib/python3.7/site-packages/jupyter_client/connect.py:164: RuntimeWarning: Failed to set sticky bit on '/usr/home/jupyter/.local/share/jupyter/runtime/kernel-b4649028-a681-47b3-83fb-0d1c22625c6f.json': [Errno 79] Inappropriate file type or format: '/usr/home/jupyter/.local/share/jupyter/runtime/kernel-b4649028-a681-47b3-83fb-0d1c22625c6f.json' Probably not a big deal, but runtime files may be cleaned up periodically. RuntimeWarning, -- You are receiving this mail because: You are the assignee for the bug. ___ freebsd-python@freebsd.org mailing list https://lists.freebsd.org/mailman/listinfo/freebsd-python To unsubscribe, send any mail to "freebsd-python-unsubscr...@freebsd.org"
[Bug 249337] [meta] Ports broken by Python 2.7 End-of-Life and removal
https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=249337 Bug 249337 depends on bug 249657, which changed state. Bug 249657 Summary: devel/py-subprocess32: depends on python 2.x https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=249657 What|Removed |Added Status|New |Closed Resolution|--- |Works As Intended -- You are receiving this mail because: You are the assignee for the bug. ___ freebsd-python@freebsd.org mailing list https://lists.freebsd.org/mailman/listinfo/freebsd-python To unsubscribe, send any mail to "freebsd-python-unsubscr...@freebsd.org"
[Bug 249936] www/py-notebook: not working in jail, "Kernel starting, please wait..."
https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=249936 --- Comment #3 from Danilo G. Baio --- Make a test, remove that config and start it directly (from jupyter homedir). // Use the IP address from your lan $ jupyter notebook --ip=192.168.15.231 [I 18:53:06.714 NotebookApp] Serving notebooks from local directory: /usr/home/notebook [I 18:53:06.714 NotebookApp] Jupyter Notebook 6.1.4 is running at: [I 18:53:06.714 NotebookApp] http://192.168.15.231:/?token=7f91b4e60e6afead5020e4a9c40228598bb08afa5c32d2e7 [I 18:53:06.714 NotebookApp] or http://127.0.0.1:/?token=7f91b4e60e6afead5020e4a9c40228598bb08afa5c32d2e7 [I 18:53:06.714 NotebookApp] Use Control-C to stop this server and shut down all kernels (twice to skip confirmation). [W 18:53:06.718 NotebookApp] No web browser found: could not locate runnable browser. [C 18:53:06.718 NotebookApp] To access the notebook, open this file in a browser: file:///usr/home/notebook/.local/share/jupyter/runtime/nbserver-92277-open.html Or copy and paste one of these URLs: http://192.168.15.231:/?token=7f91b4e60e6afead5020e4a9c40228598bb08afa5c32d2e7 or http://127.0.0.1:/?token=7f91b4e60e6afead5020e4a9c40228598bb08afa5c32d2e7 [I 18:53:24.928 NotebookApp] 302 GET /?token=7f91b4e60e6afead5020e4a9c40228598bb08afa5c32d2e7 (192.168.X.X) 1.64ms I've created a new jail and it seems fine. -- You are receiving this mail because: You are the assignee for the bug. ___ freebsd-python@freebsd.org mailing list https://lists.freebsd.org/mailman/listinfo/freebsd-python To unsubscribe, send any mail to "freebsd-python-unsubscr...@freebsd.org"
[Bug 249936] www/py-notebook: not working in jail, "Kernel starting, please wait..."
https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=249936 --- Comment #4 from Leonardo M. Ramé --- No, same issue: $ jupyter notebook --ip=192.168.1.102 [I 19:32:22.764 NotebookApp] Serving notebooks from local directory: /usr/home/jupyter [I 19:32:22.764 NotebookApp] Jupyter Notebook 6.1.4 is running at: [I 19:32:22.764 NotebookApp] http://192.168.1.102:/ [I 19:32:22.764 NotebookApp] Use Control-C to stop this server and shut down all kernels (twice to skip confirmation). [W 19:32:22.767 NotebookApp] No web browser found: could not locate runnable browser. [W 19:32:24.910 NotebookApp] 404 GET /api/kernels/12feb62d-d6f6-40ba-941b-baccd16304b1/channels?session_id=555d9586b20746e984b2f63194384499 (192.168.0.110): Kernel does not exist: 12feb62d-d6f6-40ba-941b-baccd16304b1 [W 19:32:24.930 NotebookApp] 404 GET /api/kernels/12feb62d-d6f6-40ba-941b-baccd16304b1/channels?session_id=555d9586b20746e984b2f63194384499 (192.168.0.110) 21.16ms referer=None Important: my network is as this: 1. Client: 192.168.0.110 2. Host: 192.168.0.111 3. Jail: 192.168.1.102 Host routes port to jail using a pf rule. My /etc/pf.conf: # vim: set ft=pf # /etc/pf.conf #Declare the interfaces, Public IP, private subnet, EXT_IF0 = "re0" EXT_IF1 = "lo1" IP_PUB="192.168.0.111" NET_JAIL="192.168.1.0/24" LAN_IP="192.168.0.1" PSQL_JAIL_IP="192.168.1.101" JUPYTERLAB_JAIL_IP="192.168.1.102" nat pass on $EXT_IF1 from $NET_JAIL to any -> $LAN_IP nat pass on $EXT_IF0 from $NET_JAIL to any -> $IP_PUB # PostgreSql Jail rdr on $EXT_IF0 proto tcp from any to $IP_PUB port 5432 -> $PSQL_JAIL_IP rdr on lo0 proto tcp from any to 127.0.0.1 port 5432 -> $PSQL_JAIL_IP # JupyterLab Jail rdr on $EXT_IF0 proto tcp from any to $IP_PUB port -> $JUPYTERLAB_JAIL_ -- You are receiving this mail because: You are the assignee for the bug. ___ freebsd-python@freebsd.org mailing list https://lists.freebsd.org/mailman/listinfo/freebsd-python To unsubscribe, send any mail to "freebsd-python-unsubscr...@freebsd.org"
[Bug 249936] www/py-notebook: not working in jail, "Kernel starting, please wait..."
https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=249936 --- Comment #5 from Danilo G. Baio --- (In reply to Leonardo M. Ramé from comment #4) so it seems network related... BTW, using VNET here, it simplifies a lot. -- You are receiving this mail because: You are the assignee for the bug. ___ freebsd-python@freebsd.org mailing list https://lists.freebsd.org/mailman/listinfo/freebsd-python To unsubscribe, send any mail to "freebsd-python-unsubscr...@freebsd.org"
