Bug#617820: Status for biosdevname
On 07/26/2012 12:39 AM, Ulrich Dangel wrote: I just stumbled upon your ITP. Is there any progress so far? Hi, Unfortunately there is no progress so far from my side. Are you interested in the development ? Regards, Alex -- To UNSUBSCRIBE, email to debian-wnpp-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org/5010f8c8.1040...@biotec.tu-dresden.de
Bug#649089: Subject: ITP: libdancer-session-cookie-perl -- Encrypted cookie-based session backend for Dancer
Package: wnpp Owner: Alex Mestiashvili Severity: wishlist X-Debbug-CC: debian-p...@lists.debian.org * Package name: libdancer-session-cookie-perl Version : 0.15 Upstream Author : Alex Kapranoff * URL : http://search.cpan.org/dist/Dancer-Session-Cookie/ * License : Artistic or GPL-1 Programming Lang: Perl Description : Encrypted cookie-based session backend for Dancer Dancer::Session::Cookie implements a session engine for sessions stored entirely in cookies. Usually only session id is stored in cookies and the session data itself is saved in some external storage, e.g. database. This module allows one to avoid using external storage at all. . Since server cannot trust any data returned by client in cookies, this module uses cryptography to ensure integrity and also secrecy. The data your application stores in sessions is completely protected from both tampering and analysis on the client-side. -- To UNSUBSCRIBE, email to debian-wnpp-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org/4ec500d1.70...@biotec.tu-dresden.de
Bug#356733: reopen the RFP for libpam-abl
The package can be found on mentors.debian.net: - URL: http://mentors.debian.net/debian/pool/main/l/libpam-abl - Source repository: deb-src http://mentors.debian.net/debian unstable main contrib non-free - dget http://mentors.debian.net/debian/pool/main/l/libpam-abl/libpam-abl_0.4.1-1.dsc I would be glad if someone uploaded this package for me. Kind regards Alex -- To UNSUBSCRIBE, email to debian-wnpp-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org/4dcab597.1080...@biotec.tu-dresden.de
Bug#627799: ITP: cufflinks -- Transcript assembly, differential expression and regulation for RNA-Seq
Package: wnpp Severity: wishlist Owner: Alex Mestiashvili * Package name: cufflinks Version : 1.0.2 Upstream Author : Cole Trapnell * URL : http://cufflinks.cbcb.umd.edu * License : BSL-1 Programming Lang: C++, Python Description : Transcript assembly, differential expression and regulation for RNA-Seq Cufflinks assembles transcripts, estimates their abundances, and tests for differential expression and regulation in RNA-Seq samples. It accepts aligned RNA-Seq reads and assembles the alignments into a parsimonious set of transcripts. Cufflinks then estimates the relative abundances of these transcripts based on how many reads support each one. -- To UNSUBSCRIBE, email to debian-wnpp-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org/4ddbd6f7.2020...@biotec.tu-dresden.de
Bug#627799: libbam-dev ships sam.h in /usr/include/samtools
On 05/25/2011 04:35 AM, Charles Plessy wrote: Dear Alex, As the Perl transition is over, I have updated libbam to serve its headers in /usr/include/samtools, and libbio-samtools-perl to search for them there. You can go ahead with a similar change in cufflinks any time you like. Have a nice day, Hello , Thank you . Cufflinks in the git repository appears to be lintian clean . The manual pages were missing , but each tool provides a help , so I converted them with help2man and edited a bit for the better appearance . http://anonscm.debian.org/gitweb/?p=debian-med/cufflinks.git Best regards , Alex -- To UNSUBSCRIBE, email to debian-wnpp-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org/4ddd1341.7020...@biotec.tu-dresden.de
Bug#616126: ITP: authprogs -- A simple wrapper for SSH's resticted commands via pubkey auth
On 09/18/2012 01:14 PM, Carlos Alberto Lopez Perez wrote: > Hi Alex, > > I was testing your initial package [1] and it looks good. > > However I found two issues: > > - perl-doc build-depend is missing > > - you should use Architecture:all for packages that are >architecture-independent like interpreted languages >(perl/python/bash..) > > I am attaching here the debdiff to fix this issues > > I encourage you to retry submitting a new version of your > package to debian-mentors. > > > Regards! > > > [1] http://www.biotec.tu-dresden.de/~alex/authprogs/authprogs_0.1-1.dsc Hi Carlos, Sorry for such a long delay and thank you a lot for the patch. Actually I though that it was a bad idea to package such a small script and it won't get into Debian anyway. But after short googling I found out that quite some people are interested in this code and there is even an implementation in C. So may be it will be useful as the debian package. I'll update the package as soon as I have some time for it. Best regards, Alex -- To UNSUBSCRIBE, email to debian-wnpp-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org/50f9006a.6020...@biotec.tu-dresden.de
Bug#617820: support for installing unconfigured systems (VM images, Debian Live images, preinstalled mobile/tablet images)
On 08/13/2011 06:15 PM, Colin Watson wrote: On Sat, Aug 13, 2011 at 02:55:51PM +0100, Ben Hutchings wrote: There is a new network device naming scheme that uses physical location (slot number or firmware-provided port number) to name PCI network devices. So far this is implemented in Fedora 15 and RHEL 6.1 (!). I assume this would generate consistent device names for network devices in VMs if the configurations differ only by MAC address. Marco, do you have any plans for using this scheme as an option or as the default? This is implemented in the biosdevname package, which I think we should get into Debian. I got it into Ubuntu a while back, but have been neglecting to sync up Debian. Alex, what's the progress of your ITP (#617820)? Would you like to work together based on my Ubuntu package (https://launchpad.net/ubuntu/+source/biosdevname), which in turn was somewhat based on the packaging provided by upstream? I liked the idea of biosdevname and use it for my hardware . The are no big progress because I've seen the discussion about possible solution with udev rules .But I would like to make the package tidy .I'll look on your package as soon as I'll find some time . Regards , Alex -- To UNSUBSCRIBE, email to debian-wnpp-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org/4e54be31.3040...@biotec.tu-dresden.de
Bug#730640: ITP: pycorrfit -- data analysis software for fluorescence correlation spectroscopy
Package: wnpp Severity: wishlist Owner: Alex Mestiashvili * Package name: pycorrfit Version : 0.8.0-2beta Upstream Author : Paul Mueller * URL : http://paulmueller.github.io/PyCorrFit/ * License : GPL2.0+ Programming Lang: Python Description : data analysis software for fluorescence correlation spectroscopy PyCorrFit is a general-purpose FCS evaluation software that, amongst other formats, supports the established Zeiss ConfoCor3 ~.fcs file format. PyCorrFit comes with several built-in model functions, covering a wide range of applications in standard confocal FCS. In addition, it contains equations dealing with different excitation geometries like total internal reflection (TIR). -- To UNSUBSCRIBE, email to debian-wnpp-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org/529614a1.9070...@biotec.tu-dresden.de
Bug#779014: ITP: subread -- toolkit for processing next-gen sequencing data
Package: wnpp Severity: wishlist Owner: Alexandre Mestiashvili X-Debbugs-Cc: debian-de...@lists.debian.org, debian-...@lists.debian.org * Package name: subread Version : 1.4.6-p1 Upstream Author : shi at wehi dot edu dot au * URL : http://subread.sourceforge.net/ * License : GPL3 Programming Lang: C Description : toolkit for processing next-gen sequencing data Subread aligner can be used to align both gDNA-seq and RNA-seq reads. Subjunc aligner was specified designed for the detection of exon-exon junction. For the mapping of RNA-seq reads, Subread performs local alignments and Subjunc performs global alignments. -- To UNSUBSCRIBE, email to debian-wnpp-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Archive: https://lists.debian.org/54eaf8db.9020...@biotec.tu-dresden.de
Bug#688066: rex: changing back from RFP to ITP
retitle 688066 'ITP: rex -- A framework for deployment and configuration management' owner 688066 !
Bug#805891: ITP: python-bibtexparser -- a Python library to parse bibtex files
Package: wnpp Severity: wishlist Owner: Alex Mestiashvili X-Debbugs-Cc: debian-pyt...@lists.debian.org * Package name: python-bibtexparser Version : 0.6.1 Upstream Author : François Boulogne * URL : https://github.com/sciunto-org/python-bibtexparser * License : LGPL-3+ or BSD-3-Clause Programming Lang: Python Description : a Python library to parse bibtex files The bibtexparser module provides parsing and writing of BibTeX files functionality. The parsed data is returned as a simple BibDatabase object with the main attribute being entries representing bibliographic sources such as books and journal articles.
Bug#710097: ITP: libsession-storage-secure-perl -- implements a secure way to encode session data
Package: wnpp Severity: wishlist Owner: Alexandre Mestiashvili X-Debbug-CC: debian-p...@lists.debian.org * Package name: libsession-storage-secure-perl Version : 0.6 Upstream Author : David Golden * URL : https://metacpan.org/release/Number-Tolerant/ * License : Apache-2.0 Programming Lang: Perl Description : module implements a secure way to encode session data Session::Storage::Secure provides encrypted, expiring, compressed, serialized session data with integrity. It is primarily intended for storing session data in browser cookies, but could be used with other backend storage where security of stored session data is important. -- To UNSUBSCRIBE, email to debian-wnpp-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org/51a46d47.1040...@biotec.tu-dresden.de
Bug#787739: ITP: plip -- fully automated protein-ligand interaction profiler
On 06/05/2015 03:04 PM, Geert Stappers wrote: On Fri, Jun 05, 2015 at 02:08:37PM +0200, Simon Richter wrote: On 05.06.2015 11:25, Alex Mestiashvili wrote: This might be confusing to old people. PLIP is a protocol for transporting IP packets over the parallel port. I agree that the name is a bit ambiguous, but I see a couple of reasons why it is still might be ok: Yes, I also think it is probably okay -- I just wanted to mention that it might be confusing at first. In other words: 'plip' is a good name for the "protein-ligand interaction profiler" Groeten Geert Stappers Thank you for the answers, I'll go with the name "plip" mostly due to the potential problems with the repository renaming. Best regards, Alex -- To UNSUBSCRIBE, email to debian-wnpp-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Archive: https://lists.debian.org/55754adb.6000...@biotec.tu-dresden.de
Bug#613528: ITP: zodiac -- ZODIAC - Zeden's Organise DIsplay And Compute
Subject: ITP: zodiac -- ZODIAC - Zeden's Organise DIsplay And Compute Package: wnpp Owner: Alex Mestiashvili Severity: wishlist *** Please type your report below this line *** * Package name: zodiac Version : 6.5.0 Upstream Author : Nicola Zonta, nicola.zonta(at)zeden.org * URL : http://www.zeden.org/ * License : GPL Programming Lang: C, C++ Description : ZODIAC - Zeden's Organise DIsplay And Compute Zodiac is a molecular modelling suite for computation, analysis and display of molecular data. It features state-of-the-art tools for managing molecular databases, run molecular docking experiments, compute raytraced images and much more. -- To UNSUBSCRIBE, email to debian-wnpp-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org/4d5a797b.8040...@biotec.tu-dresden.de
Bug#614382: ITP: transtermhp -- Finds rho-independent transcription terminators in bacterial genomes.
Package: wnpp Owner: Alex Mestiashvili Severity: wishlist *** Please type your report below this line *** * Package name: transtermhp Version : 2.0.7 Upstream Author : Carl Kingsford * URL : http://transterm.cbcb.umd.edu/ * License : GPL Programming Lang: C++ Description : Finds rho-independent transcription terminators in bacterial genomes. TransTermHP finds rho-independent transcription terminators in bacterial genomes. Each terminator found by the program is assigned a confidence value that estimates its probability of being a true terminator. TransTermHP is described in: . C. Kingsford, K. Ayanbule and S.L. Salzberg. Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake. Genome Biology 8:R22 (2007). . A predecessor system, TransTerm, that used very different search and scoring algorithms is described in: . Maria D. Ermolaeva, Hanif G. Khalak, Owen White, Hamilton O. Smith and Steven L. Salzberg. Prediction of Transcription Terminators in Bacterial Genomes. J Mol Biol 301, (1), 27-33 (2000) -- To UNSUBSCRIBE, email to debian-wnpp-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org/4d6280e8.8050...@biotec.tu-dresden.de
Bug#616126: ITP: authprogs -- A simple wrapper for SSH's resticted commands via pubkey auth
Package: wnpp Owner: Alex Mestiashvili Severity: wishlist *** Please type your report below this line *** * Package name: authprogs Version : 0.1 Upstream Author : Brian Hatch * URL : http://www.hackinglinuxexposed.com/tools/authprogs/src/ * License : GPL Programming Lang: perl Description : A simple wrapper for SSH's resticted commands via pubkey auth. Authprogs is a wrapper script for the ssh public key based authentication. Allowed commands and ip addresses are defined in the configuration file on the remote side . -- To UNSUBSCRIBE, email to debian-wnpp-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org/4d6e8a7d.5050...@biotec.tu-dresden.de
Bug#617820: ITP: biosdevname -- takes a kernel device name as an argument, and returns the BIOS-given name.
Package: wnpp Severity: wishlist * Package name: biosdevname Version : 0.3.7 Upstream Author : Matt Domsch * URL : http://linux.dell.com/biosdevname/ * License : GPL2 Programming Lang: C Description : biosdevname in its simplest form takes a kernel device name as an argument, and returns the BIOS-given name it "should" be. . This is necessary on systems where the BIOS name for a given device (e.g. the label on the chassis is "Gb1") doesn't map directly and obviously to the kernel name (e.g. eth0). -- To UNSUBSCRIBE, email to debian-wnpp-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org/4d7a564b.9040...@biotec.tu-dresden.de
Bug#617340: ITP: seq-gen -- simulate the evolution of nucleotide or amino acid sequences
Package: wnpp Severity: wishlist Owner: Alex Mestiashvili * Package name: seq-gen Version : 1.3.2 Upstream Author : Andrew Rambaut * URL : http://tree.bio.ed.ac.uk/software/seqgen/ * License : GPL Programming Lang: C Description : simulate the evolution of nucleotide or amino acid sequences Seq-Gen is a program that will simulate the evolution of nucleotide or amino acid sequences along a phylogeny, using common models of the substitution process. A range of models of molecular evolution are implemented including the general reversible model. State frequencies and other parameters of the model may be given and site-specific rate heterogeneity may also be incorporated in a number of ways. Any number of trees may be read in and the program will produce any number of data sets for each tree. Thus large sets of replicate simulations can be easily created. It has been designed to be a general purpose simulator that incorporates most of the commonly used (and computationally tractable) models of molecular sequence evolution. -- To UNSUBSCRIBE, email to debian-wnpp-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org/4d75f24a.5000...@biotec.tu-dresden.de
Bug#701932: ITP: ergo -- quantum chemistry program for large-scale self-consistent field calculations
Package: wnpp Severity: wishlist Owner: Alexandre Mestiashvili * Package name: ergo Version : 3.2.1 Upstream Author : Elias Rudberg, Emanuel H. Rubensson, Pawel Salek * URL : http://ergoscf.org * License : GPL-3 Programming Lang: C++ Description : quantum chemistry program for large-scale self-consistent field calculations. Performs electronic structure calculations using Hartree-Fock and Kohn-Sham density functional theory. Uses Gaussian basis sets. Both core and valence electrons are included in the calculations. Both restricted and unrestricted models are implemented for energy calculations. Implements a broad range of both pure and hybrid Kohn-Sham density functionals. Employs modern linear scaling techniques like fast multipole methods, hierarchic sparse matrix algebra, density matrix purification, and efficient integral screening. Linear scaling is achieved not only in terms of CPU usage but also memory utilization. The time consuming parts of the code are currently parallelized using the shared-memory paradigm. -- To UNSUBSCRIBE, email to debian-wnpp-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org/512fca49.4080...@biotec.tu-dresden.de
Bug#702567: ITP: libcrypt-urandom-perl -- provides non blocking randomness
Package: wnpp Severity: wishlist Owner: Alexandre Mestiashvili X-Debbug-CC: debian-p...@lists.debian.org * Package name: libcrypt-urandom-perl Version : 0.29 Upstream Author : David Dick * URL : https://metacpan.org/release/Crypt-URandom/ * License : Artistic or GPL-1 Programming Lang: Perl Description : module provides non blocking randomness Crypt::Urandom is intended to provide an interface to the strongest available source of non-blocking randomness on the current platform. -- To UNSUBSCRIBE, email to debian-wnpp-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org/5139dd9a.80...@biotec.tu-dresden.de
Bug#702576: ITP: libnumber-tolerant-perl -- tolerance ranges for inexact numbers
Package: wnpp Severity: wishlist Owner: Alexandre Mestiashvili X-Debbug-CC: debian-p...@lists.debian.org * Package name: libnumber-tolerant-perl Version : 1.701 Upstream Author : Ricardo Signes * URL : https://metacpan.org/release/Number-Tolerant/ * License : Artistic or GPL-1 Programming Lang: Perl Description : tolerance ranges for inexact numbers Number::Tolerant creates a number-like object whose value refers to a range of possible values, each equally acceptable. It overloads comparison operations to reflect this. -- To UNSUBSCRIBE, email to debian-wnpp-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org/513a0350.6030...@biotec.tu-dresden.de
Bug#746246: ITP: python-multipletau -- A multiple-tau algorithm for Python/NumPy
Package: wnpp Severity: wishlist Owner: Alexandre Mestiashvili * Package name: python-multipletau Version : 0.1.4 Upstream Author : Paul Mueller * URL : https://github.com/paulmueller/multipletau * License : BSD Programming Lang: Python Description : A multiple-tau algorithm for Python/NumPy Multipe-tau correlation is computed on a logarithmic scale (less data points are computed) and is thus much faster than conventional correlation on a linear scale such as `numpy.correlate`. git repository: http://anonscm.debian.org/gitweb/?p=debian-med/python-multipletau.git -- To UNSUBSCRIBE, email to debian-wnpp-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Archive: https://lists.debian.org/535e54d5.4020...@biotec.tu-dresden.de
Bug#751846: ITP: pyscanfcs -- data analysis software for perpendicular line scanning FCS
Package: wnpp Severity: wishlist Owner: Alexandre Mestiashvili * Package name: pyscanfcs Version : 0.2.2 Upstream Author : Paul Mueller * URL : http://paulmueller.github.io/PyScanFCS * License : GPL-2+ Programming Lang: Python Description : data analysis software for perpendicular line scanning FCS When a membrane is scanned perpendicularly to its surface, the fluorescence signal originating from the membrane itself must be separated from the signal of the surrounding medium for an FCS analysis. PyScanFCS interactively extracts the fluctuating fluorescence signal from such measurements and applies a multiple-tau algorithm. The obtained correlation curves can be evaluated using PyCorrFit -- To UNSUBSCRIBE, email to debian-wnpp-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Archive: https://lists.debian.org/20140617074020.5554.32198.report...@bioinfws32.biotec.tu-dresden.de
Bug#980477: RFA: libzstd1 -- fast lossless compression algorithm
Package: wnpp Severity: normal I am looking for a new maintainer/co-maintainer for libzstd. Initially it was packaged by the Debian-Med team as a dependency, but now this library is also used in many other packages. It doesn't fit Debian-Med namespace anymore and it would be better if another team would adopt it. Alex
Bug#980477: RFA: libzstd1 -- fast lossless compression algorithm
On 1/22/21 7:45 AM, Peter Pentchev wrote: On Tue, Jan 19, 2021 at 04:04:16PM +0100, Alex Mestiashvili wrote: Package: wnpp Severity: normal I am looking for a new maintainer/co-maintainer for libzstd. Initially it was packaged by the Debian-Med team as a dependency, but now this library is also used in many other packages. It doesn't fit Debian-Med namespace anymore and it would be better if another team would adopt it. Hi, I'd be happy to step in as (co-)maintainer, or, if you prefer, we could move the package to the pkg-rpm team, where the recently packaged libdrpm and libzchunk depend on it. Thanks a lot for taking care of libzstd in Debian! G'luck, Peter Hi Peter, Thank you! Yes, moving to pkg-rpm sounds good to me. I can then try to join the pkg-rpm team in order to co-maintain libzstd. What need to be done from my side to move it to the pkg-rpm namespace on salsa.d.o ? @Andreas, can we just move the git repo? is there a procedure for that? Best regards, Alex
Bug#924749: ITP: hd-idle -- Spin down idle [USB] hard disks
Package: wnpp Severity: wishlist Owner: Alex Mestiashvili * Package name: hd-idle Version : 1.05 Upstream Author : Christian Mueller * URL : http://hd-idle.sourceforge.net/ * License : GPLv2 Programming Lang: C Description : Spin down idle [USB] hard disks hd-idle is a utility program for spinning-down external disks after a period of idle time. Since most external IDE disk enclosures don't support setting the IDE idle timer, a program like hd-idle is required to spin down idle disks automatically. . A word of caution: hard disks don't like spinning up too often. Laptop disks are more robust in this respect than desktop disks but if you set your disks to spin down after a few seconds you may damage the disk over time due to the stress the spin-up causes on the spindle motor and bearings. It seems that manufacturers recommend a minimum idle time of 3-5 minutes, the default in hd-idle is 10 minutes. . One more word of caution: hd-idle will spin down any disk accessible via the SCSI layer (USB, IEEE1394, ...) but it will not work with real SCSI disks because they don't spin up automatically. Thus it's not called scsi-idle and I don't recommend using it on a real SCSI system unless you have a kernel patch that automatically starts the SCSI disks after receiving a sense buffer indicating the disk has been stopped. Without such a patch, real SCSI disks won't start again and you can as well pull the plug. Some drives, do not support spin down via hdparm, but can be spun down using hd-idle. The package will be maintained under collab-maint on salsa.
Bug#927419: Subject: ITP: libtest-mockdatetime-perl -- mock DateTime->now calls during tests
Package: wnpp Owner: Alexandre Mestiashvili Severity: wishlist X-Debbugs-CC: debian-de...@lists.debian.org, debian-p...@lists.debian.org * Package name: libtest-mockdatetime-perl Version : 0.02-1 Upstream Author : Wolfgang Kinkeldei * URL : https://metacpan.org/release/Test-MockDateTime * License : Artistic or GPL-1+ Programming Lang: Perl Description : mock DateTime->now calls during tests Getting the current time sometimes is not very helpful for testing scenarios. Instead, if you could obtain a known value during the runtime of a testcase will make your results predictable. . This module allows faking a given date and time for the runtime of a subsequent code block. By default the on keyword is exported into the namespace of the test file. The date to get mocked must be in a format that is recognized by DateTime::Format::DateParse. This package is a dependency for Dancer2::Plugin::Auth::Extensible and will be maintained under the Debian Perl Group umbrella.
Bug#814867: InChI license
On 05/30/2018 04:57 PM, Andrius Merkys wrote: > Hello, > > the IUPAC/InChI-Trust InChI Licence of InChI (https://www.inchi-trust.org) is > possibly non-DFSG-compatible > (https://lists.debian.org/debian-legal/2018/02/msg00026.html), thus the > package might not be suitable for Debian. Nevertheless, the copies of InChI > are in Debian already as embedded by packages openbabel and indigo: openbabel > v2.3.2 (newest in unstable) has earlier version of the library which is > licensed under LGPL, whereas indigo v1.1.12 carries the library with the > IUPAC/InChI-Trust InChI Licence. I suggest either reconsidering this license, > or eliminating it from Debian altogether. > > Best, > Andrius > Hi Andrius, My poor understanding is that IUPAC-InChI Trust License is not perfectly worded LGPL which suppose to be more permissive then LGPL and thus is DFSG compatible. >From the official site: https://iupac.org/who-we-are/divisions/division-details/inchi/ The InChITM program version 1.04 is free software developed under the auspices of the International Union of Pure and Applied Chemistry (IUPAC) and the InChI Trust. You can redistribute it and/or modify it under the terms of the IUPAC-InChI Trust License (PDF). This is a more permissive version of the GNU Lesser General Public License version 2.1 that was applied to previous versions of the software. Here are few mail threads regarding attempts to make the license more permissive: Initial request: https://sourceforge.net/p/inchi/mailman/message/25847235/ 3 years later version 1.04 is released under modified LGPL which allows static linking with non-free software: https://sourceforge.net/p/inchi/mailman/message/31895574/ Best regards, Alex
Bug#902010: ITP: krop -- tool to crop PDF files
Package: wnpp Severity: wishlist Owner: Alex Mestiashvili X-Debbugs-Cc: ames...@rsh2.donotuse.de, debian-de...@lists.debian.org * Package name: krop Version : 0.5.0 Upstream Author : Armin Straub * URL : https://github.com/arminstraub/krop * License : GPLv3+ Programming Lang: Python 3 Description : tool to crop PDF files simple graphical tool to crop the pages of PDF files. It is written in Python and relies on PyQT, python-poppler-qt4 and pyPDF for its functionality. . A unique feature of krop is its ability to automatically split pages into subpages to fit the limited screen size of devices such as eReaders. This is particularly useful, if your eReader does not support convenient scrolling. This package will be maintained under Debian namespace on salsa.
Bug#902010: ITP: krop -- tool to crop PDF files
On 06/21/2018 03:38 PM, Scott Kitterman wrote: > > > On June 21, 2018 1:01:48 PM UTC, Alex Mestiashvili > wrote: >> Package: wnpp >> Severity: wishlist >> Owner: Alex Mestiashvili >> X-Debbugs-Cc: ames...@rsh2.donotuse.de, debian-de...@lists.debian.org >> >> * Package name: krop >> Version : 0.5.0 >> Upstream Author : Armin Straub >> * URL : https://github.com/arminstraub/krop >> * License : GPLv3+ >> Programming Lang: Python 3 >> Description : tool to crop PDF files >> >> simple graphical tool to crop the pages of PDF files. It is written >> in Python and relies on PyQT, python-poppler-qt4 and pyPDF for its >> functionality. > > Please wait for the PyQt5 port. > > We want to remove PyQt4 from the archive in Buster in support of Qt4 removal. > We would prefer not to add new rdepends. > > Scott K > Sorry, that's a typo, the package is using qt5 packages. Alex
Bug#950922: ITP: bustools -- program for manipulating BUS files for single cell RNA-Seq datasets
Package: wnpp Severity: wishlist Owner: Alexandre Mestiashvili X-Debbugs-Cc: debian-de...@lists.debian.org * Package name: bustools Version : 0.40.0 Upstream Author : Páll Melsted * URL : https://bustools.github.io/ * License : BSD Programming Lang: C++ Description : program for manipulating BUS files for single cell RNA-Seq datasets can be used to error correct barcodes, collapse UMIs, produce gene count or transcript compatibility count matrices Package will be maintained under Debian Med umbrella
Bug#955495: ITP: orthanc-python -- Develop plugins for Orthanc using the Python programming language
On 4/1/20 5:38 PM, Sebastien Jodogne wrote: > Package: wnpp > Severity: wishlist > Owner: Sebastien Jodogne > > * Package name: orthanc-python > Version : 1.0 > Upstream Author : Sebastien Jodogne > * URL : https://www.orthanc-server.com/ > * License : AGPL > Programming Lang: C++, Python > Description : Develop plugins for Orthanc using the Python programming > language > > This plugin can be used to write Orthanc plugins using the Python programming > language instead of the more complex C/C++ programming languages. It can be > used to gain access to Python modules directly in Orthanc. > > This plugin can be of great help to anyone wishing to automate her imaging > workflow, to design/train new machine learning algorithms, or to deploy AI > systems directly in clinical setups. > > Full documentation is available in the Orthanc Book: > https://book.orthanc-server.com/plugins/python.html > Hi Sebastien, if this is a python module then it should follow python guidelines. The name in this case should be python3-orthanc, see LibraryStyleGuide: https://wiki.debian.org/Python/LibraryStyleGuide After building and installing orthanc-python I can't import orthanc from python3 most likely because python doesn't know where to find it. By following the python packaging guidelines this problem will be solved. I'd remove Resources/Builders/ via files-excluded in d/copyright since these files are not relevant for Debian as far as I see. There is no need in empty d/patches/ d/watch, is there need for +dfsg suffix ? If I run uscan --force-download it downloads and repacks tarball without dfsg suffix. Some files have trailing white space, which is a bit annoying, but this is already nitpicking :) - d/control - d/copyright Best regards, Alex
Bug#1098421: RFP: libdancer2-plugin-auth-extensible-perl -- extensible authentication framework for Dancer2
Package: wnpp Severity: wishlist * Package name: libdancer2-plugin-auth-extensible-perl Version : 0.711 Upstream Contact: * URL : https://github.com/PerlDancer/Dancer2-Plugin-Auth-Extensible * License : Artistic or GPL-1+ Programming Lang: Perl Description : extensible authentication framework for Dancer2 - part of Dancer2 ecosystem providing access to different authentication options - Package suppose to be maintained under DebainPerl umbrella
Bug#1098422: RFP: libdancer2-plugin-auth-extensible-provider-ldap-perl -- LDAP authentication provider for Dancer2::Plugin::Auth::Extensible
Package: wnpp Severity: wishlist * Package name: libdancer2-plugin-auth-extensible-provider-ldap-perl Version : 0.706 Upstream Contact: Peter Mottram * URL : https://github.com/PerlDancer/Dancer2-Plugin-Auth-Extensible-Provider-LDAP * License : Artistic or GPL-1+ Programming Lang: Perl Description : LDAP authentication provider for Dancer2::Plugin::Auth::Extensible - Package suppose to be maintained under DebianPerl Team
Bug#1098423: RFP: libdancer2-session-cookie-perl -- Dancer 2 session storage in secure cookies
Package: wnpp Severity: wishlist * Package name: libdancer2-session-cookie-perl Version : 0.009 Upstream Contact: David Golden * URL : https://metacpan.org/pod/Dancer2::Session::Cookie * License : Apache-2.0 Programming Lang: Perl Description : Dancer 2 session storage in secure cookies - This module implements a session factory for Dancer 2 that stores session state within a browser cookie. Features include: * Data serialization and compression using Sereal * Data encryption using AES with a unique derived key per cookie * Enforced expiration timestamp (independent of cookie expiration) * Cookie integrity protected with a message authentication code (MAC) - Package supposed to be maintained under the DebianPerl umbrella
