Bug#990845: ITP: golang-github-gopasspw-pinentry -- Pinentry client in Go
Package: wnpp Severity: wishlist Owner: Taowa * Package name: golang-github-gopasspw-pinentry Version : 0.0.2-1 Upstream Author : Gopass Authors * URL : https://github.com/gopasspw/pinentry * License : Expat Programming Lang: Go Description : Pinentry client in Go Pinentry client in Go This pinentry library from gopass is an rdep of yubikey-agent (#969181). -- Taowa (they) people.debian.org/~taowa LOC FN35EL
Bug#990846: ITP: golang-github-go-piv-piv-go -- Keys and certificates for YubiKeys, written in Go
Package: wnpp Severity: wishlist Owner: Taowa X-Debbugs-CC: debian-de...@lists.debian.org, debian...@lists.debian.org * Package name: golang-github-go-piv-piv-go Version : 1.8.0-1 Upstream Author : Eric Chiang * URL : https://github.com/go-piv/piv-go * License : Apache-2.0 Programming Lang: Go Description : Keys and certificates for YubiKeys, written in Go A Go YubiKey PIV implementation . YubiKeys implement the PIV specification for managing smart card certificates. This applet is a simpler alternative to GPG for managing asymmetric keys on a YubiKey. This is an rdep for yubikey-agent (#969181). -- Taowa (they) people.debian.org/~taowa LOC FN35EL
Bug#990851: ITP: nano-snakemake -- detection of structural variants in genome sequencing data
Package: wnpp Severity: wishlist Subject: ITP: nano-snakemake -- detection of structural variants in genome sequencing data Package: wnpp Owner: Steffen Moeller Severity: wishlist * Package name: nano-snakemake Version : 1.0+git20200224.ff11b35 Upstream Author : Wouter De Coster * URL : https://github.com/wdecoster/nano-snakemake * License : Expat Programming Lang: Python Description : detection of structural variants in genome sequencing data To "have a genetic variation" may mean many different things. Technically most straight forward to investigate are changes to single positions in the long DNA chains - every chromosome is a single polymer of nucleic acids. This is also what we have most data from for many diseases. . But sometimes, DNA that looks completely the same when looking at short reads at the time (and not feeling lucky), the position looked at may be inverted on the chromosome. Or it may be a copy of the original site and not a "real" single-nucleotide polymorphism (SNP). Or it may have translocated to another chromosome. . These are examples for structural changes to the DNA. Individuals may never notice them. Or there may be a higher chances to develop a disease or it may affect fertility. Technologies like the Nanopore have emerged that can read longer segments of the DNA, so one can see multiple copies of the same gene in the same read or at least can assemble the DNA fragments read in a way to then align the reads non-ambiguously and support the analysis of such copy-number variations (CNVs). . This snakemake pipeline on nanopore whole genome sequencing data provides a complete structural variant analysis. Steps implemented and tools wrapped comprise: * fast: minimap2 alignment with Sniffles and SVIM SV calling * precise: ngmlr alignment with Sniffles SV calling * minimap2: minimap2 alignment with Sniffles, SVIM, NanoSV and npInv SV calling * minimap2_pbsv: minimap2 alignment with pbsv-specific parameters with pbsv, SVIM, NanoSV and npInv SV calling * ngmlr: ngmlr with Sniffles, NanoSV, SVIM and npInv SV calling * last-prepare: create a LAST index and train aligner parameters using last-train * last: LAST alignment with tandem-genotypes STR calling Remark: This package is maintained by Debian Med Packaging Team at https://salsa.debian.org/med-team/nano-snakemake
Processed: ITP: nano-snakemake -- detection of structural variants in genome sequencing data
Processing commands for cont...@bugs.debian.org: > owner 990851 Steffen Moeller Bug #990851 [wnpp] ITP: nano-snakemake -- detection of structural variants in genome sequencing data Owner recorded as Steffen Moeller . > End of message, stopping processing here. Please contact me if you need assistance. -- 990851: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=990851 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
Bug#990856: ITP: tandem-genotypes -- compare lengths of duplications in DNA sequences
Package: wnpp Severity: wishlist Subject: ITP: tandem-genotypes -- compare lengths of duplications in DNA sequences Package: wnpp Owner: Steffen Moeller Severity: wishlist * Package name: tandem-genotypes Version : 1.8.2 Upstream Author : Martin C. Frith * URL : https://github.com/mcfrith/tandem-genotypes * License : GPL-3.0 Programming Lang: Python Description : compare lengths of duplications in DNA sequences Only a fraction of the DNA in the human genome (and that of other species that are not optimised for the speed of their replication like viruses) are coding for genes. Other parts may be binding to transcription factors or direct the expression of genes in other ways - these other bits may not be fully understood, and parts may indeed be "junk", but this is only until we find a clinical feature to be statistically associated with something statistically noteworthy in the DNA sequences. . Features that somehow seem informative when looking at the DNA are whatever does not look like random. This tool looks at a special case of repeats - short regions that are duplicated, i.e. they appear as a tandem. When these repeats are longer, then these would be referred as microsatellites. . When interested in structural variations, within a family/population or to compare cancer tissue with benign samples, you may also want to look at these repeats. This software determines the lengths (and changes to the lenghts) across samples and knows how to present this graphically. Remark: This package is maintained by Steffen Moeller at https://salsa.debian.org/med-team/tandem-genotypes
Processed: ITP: tandem-genotypes -- compare lengths of duplications in DNA sequences
Processing commands for cont...@bugs.debian.org: > owner 990856 Steffen Moeller Bug #990856 [wnpp] ITP: tandem-genotypes -- compare lengths of duplications in DNA sequences Owner recorded as Steffen Moeller . > End of message, stopping processing here. Please contact me if you need assistance. -- 990856: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=990856 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
Bug#990860: ITP: golang-github-smallstep-nosql -- abstraction layer for data persistency written in go
Package: wnpp Severity: wishlist Owner: Peymaneh Nejad * Package name: golang-github-smallstep-nosql Version : 0.3.6-1 Upstream Author : Smallstep * URL : https://github.com/smallstep/nosql * License : Apache-2.0 Programming Lang: Go Description : abstraction layer for data persistency written in go Currently this library provides following implementations: - BoltDB (https://github.com/etcd-io/bbolt) etcd fork. - Badger - MariaDB/MySQL
Bug#988516: uploaded
FYI Packaging is done. Upload did happen. URL https://ftp-master.debian.org/new/kanjidraw_0.2.3-1.html is a deep link to the NEW queue. Groeten Geert Stappers -- Silence is hard to parse
