Bug#965252: ITP: vcfanno -- annotate a VCF with other VCFs/BEDs/tabixed files

2020-07-18 Thread Andreas Tille
Package: wnpp
Severity: wishlist

Subject: ITP: vcfanno -- annotate a VCF with other VCFs/BEDs/tabixed files
Package: wnpp
Owner: Andreas Tille 
Severity: wishlist

* Package name: vcfanno
  Version : 0.3.2+ds
  Upstream Author : Brent Pedersen and Aaron Quinlan
* URL : https://github.com/brentp/vcfanno
* License : MIT
  Programming Lang: Python
  Description : annotate a VCF with other VCFs/BEDs/tabixed files
 Vcfanno allows you to quickly annotate your VCF with any number of INFO
 fields from any number of VCFs or BED files. It uses a simple conf file
 to allow the user to specify the source annotation files and fields and
 how they will be added to the info of the query VCF.
 .
   * For VCF, values are pulled by name from the INFO field with special
 cases of ID and FILTER to pull from those VCF columns.
   * For BED, values are pulled from (1-based) column number.
   * For BAM, depth (count), "mapq" and "seq" are currently supported.
 .
 Vcfanno is written in go and it supports custom user-scripts written in
 Lua. It can annotate more than 8000 variants per second with 34
 annotations from 9 files on a modest laptop and over 30K variants per
 second using 12 processes on a server.

Remark: This package is maintained by Debian Med Packaging Team at
   https://salsa.debian.org/med-team/vcfanno



Processed: ITP: vcfanno -- annotate a VCF with other VCFs/BEDs/tabixed files

2020-07-18 Thread Debian Bug Tracking System
Processing commands for cont...@bugs.debian.org:

> owner 965252 Andreas Tille 
Bug #965252 [wnpp] ITP: vcfanno -- annotate a VCF with other VCFs/BEDs/tabixed 
files
Owner recorded as Andreas Tille .
>
End of message, stopping processing here.

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965252: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=965252
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Bug#888705: Bug#965217: libgrpc++1: ServerBuilder::BuildAndStart hangs

2020-07-18 Thread GCS
Hi,

On Fri, Jul 17, 2020 at 8:15 PM Michael R. Crusoe  wrote:
> Hello! As part of creating the new bazel-bootstrap we have run into a
> bug fixed upstream in 1.30 https://github.com/grpc/grpc/issues/21213 but
> we woudl like to not have to wait for abseil to pass the NEW queue.
 Tried not to bark into abseil packaging anymore, but I think we
should move forward. It was already checked by FTP Masters and got
rejected. Benjamin fixed that issue and uploaded it. Then again weeks
passed. :(
Please FTP Masters re-check abseil and accept it to the archives if
everything is in order this time.

Thanks,
Laszlo/GCS



Processed: Re: Bug#965187: ITP: ruby-bullet -- A gem designed to help you increase your application's performance by reducing the number of queries it makes

2020-07-18 Thread Debian Bug Tracking System
Processing control commands:

> reassign -1 wnpp
Bug #965187 [ruby-bullet] ITP: ruby-bullet -- A gem designed to help you 
increase your application's performance by reducing the number of queries it 
makes
Warning: Unknown package 'ruby-bullet'
Bug reassigned from package 'ruby-bullet' to 'wnpp'.
Ignoring request to alter found versions of bug #965187 to the same values 
previously set
Ignoring request to alter fixed versions of bug #965187 to the same values 
previously set

-- 
965187: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=965187
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Processed: Re: Bug#965146: ITP: ruby-uniform-notifier -- Uniform notifier for a number of platforms

2020-07-18 Thread Debian Bug Tracking System
Processing control commands:

> reassign -1 wnpp
Bug #965146 [ruby-uniform-notifier] ITP: ruby-uniform-notifier -- Uniform 
notifier for a number of platforms
Warning: Unknown package 'ruby-uniform-notifier'
Bug reassigned from package 'ruby-uniform-notifier' to 'wnpp'.
Ignoring request to alter found versions of bug #965146 to the same values 
previously set
Ignoring request to alter fixed versions of bug #965146 to the same values 
previously set

-- 
965146: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=965146
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Bug#965209: ITP: php-gettext-languages -- gettext languages with plural rules

2020-07-18 Thread James Valleroy
On 7/18/20 2:08 AM, Paul Wise wrote:
> On Fri, Jul 17, 2020 at 4:42 PM James Valleroy wrote:
> 
>> Provides a language list for gettext automatically generated from
>> Unicode CLDR data.
> 
> Does that mean this package will build-depend on unicode-cldr-core? I
> assume that the generated data will be static, how do you plan to keep
> the two in sync?
> 

Sorry if the description wasn't clear. Upstream ships the CLDR data that they 
need in JSON format (and under Unicode license).
https://github.com/php-gettext/Languages/tree/master/src/cldr-data

At runtime, the JSON files are read and parsed into an instance of a PHP class 
Gettext\Languages\Language. "Generated" in the description actually refers to 
this runtime parsing. The data can be accessed from PHP code or using the 
provided example script export-plural-rules.



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Bug#965260: ITP: cactoos - Collection of object-oriented Java primitives

2020-07-18 Thread Mechtilde Stehmann
Package: wnpp
Severity: wishlist

* Package name : cactoos
  Version : 0.11
  Upstream Author : Yegor Bugayenko
* URL : https://github.com/yegor256/cactoos
* License : MIT/X
  Programming Lang: Java
  Description :  Collection of object-oriented Java primitives

  The Cactoos library's repertoire is pretty rich, ranging from string
  manipulation to data structures. The primitive types and their
  corresponding methods offered by this library are similar to the ones
  provided by other libraries like Guava and Apache Commons but are more
  focused on object-oriented design principles.



* Why is this package useful/relevant?
* Is it a dependency for another package?
It is a dependency of jcabi-ssh which is a dependency of JLawyer
* Do you use it yourself?
* If there are other packages providing similar functionality,
  how does it compare?
* How do you plan to maintain it? Do you plan to maintain it
  inside a packaging team?
  (check list at https://wiki.debian.org/Teams)
 I want to maintain it n the java-team
* Are you looking for co-maintainers? Do you need a sponsor?

...--
Mechtilde Stehmann
## Debian Developer
## PGP encryption welcome
## F0E3 7F3D C87A 4998 2899  39E7 F287 7BBA 141A AD7F



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Processed: ITP: cactoos - Collection of object-oriented Java primitives

2020-07-18 Thread Debian Bug Tracking System
Processing commands for cont...@bugs.debian.org:

> owner 965260 mechti...@debian.org
Bug #965260 [wnpp] ITP: cactoos - Collection of object-oriented Java primitives
Owner recorded as mechti...@debian.org.
>
End of message, stopping processing here.

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965260: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=965260
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Bug#965268: RFA: cwiid

2020-07-18 Thread Georges Khaznadar
Package: wnpp
Severity: normal

Hello,

I am maintaining two packages which depend on libcwiid:
sonic-Pi and python-whiteboard.

I patched the last upstream source to build a python3-cwiid package, so I shall
adopt the package cwiid.

Best regards,Georges.



Bug#965209: ITP: php-gettext-languages -- gettext languages with plural rules

2020-07-18 Thread Paul Wise
On Sat, 2020-07-18 at 07:13 -0400, James Valleroy wrote:

> Sorry if the description wasn't clear. Upstream ships the CLDR data
> that they need in JSON format (and under Unicode license).
> https://github.com/php-gettext/Languages/tree/master/src/cldr-data

So they ship a (generated) embedded data copy?

https://wiki.debian.org/EmbeddedCopies

Looks like they keep this up to date better than Debian does :(

Do you know how they generate the JSON files from the upstream data?

I wonder if the unicode-cldr-core maintainer would be willing to
generate the JSON files in that package or unicode-cldr-core-json.

> "Generated" in the description actually refers to this runtime parsing.

That language should probably get fixed, it is confusing.

-- 
bye,
pabs

https://wiki.debian.org/PaulWise


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Bug#810992: RFA: cwiid

2020-07-18 Thread Georges Khaznadar
Hello,

I am maintaining two packages which depend on libcwiid:
sonic-Pi and python-whiteboard.

I patched the last upstream source to build a python3-cwiid package, so I shall
adopt the package cwiid.

Best regards,Georges.

-- 
Georges KHAZNADAR et Jocelyne FOURNIER
22 rue des mouettes, 59240 Dunkerque France.
Téléphone +33 (0)3 28 29 17 70



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Processed: RFA: cwiid

2020-07-18 Thread Debian Bug Tracking System
Processing commands for cont...@bugs.debian.org:

> close 965268
Bug #965268 [wnpp] RFA: cwiid
Marked Bug as done
> stop
Stopping processing here.

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965268: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=965268
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Bug#965272: ITP: xxsds-dynamic -- header files for libdynamic1

2020-07-18 Thread Steffen Moeller
Package: wnpp
Severity: wishlist

Subject: ITP: xxsds-dynamic -- header files for libdynamic1
Package: wnpp
Owner: Steffen Moeller 
Severity: wishlist

* Package name: xxsds-dynamic
  Version : 1.0~alpha.1
  Upstream Author : lan Kuhnle 
* URL : https://github.com/xxsds/DYNAMIC
* License : MIT
  Programming Lang: C
  Description : header files for libdynamic1
 This package provides header files and a static library
 for the DYNAMIC library.

Remark: This package is maintained by Steffen Moeller at
   https://salsa.debian.org/med-team/dynamic



Processed: ITP: xxsds-dynamic -- header files for libdynamic1

2020-07-18 Thread Debian Bug Tracking System
Processing commands for cont...@bugs.debian.org:

> owner 965272 Steffen Moeller 
Bug #965272 [wnpp] ITP: xxsds-dynamic -- header files for libdynamic1
Owner recorded as Steffen Moeller .
>
End of message, stopping processing here.

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965272: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=965272
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Bug#965276: ITP: crazydiskinfo -- interactive TUI S.M.A.R.T viewer

2020-07-18 Thread Hideki Yamane
Package: wnpp
Severity: wishlist
Owner: Hideki Yamane 
X-Debbugs-Cc: debian-de...@lists.debian.org

* Package name: crazydiskinfo
  Version : 1.1.0
  Upstream Author : otakuto 
* URL : https://github.com/otakuto/crazydiskinfo
* License : MIT
  Programming Lang: C++
  Description : interactive TUI S.M.A.R.T viewer

 CrazyDiskInfo is an interactive TUI S.M.A.R.T viewer for Unix systems.
 .
  - UI similar to CrystalDiskInfo.
  - Health and temperature checking algorithms based on CrystalDiskInfo.



Bug#965295: ITP: strcase -- Multiway branch (switch) for short strings in C

2020-07-18 Thread Andrea Capriotti
Package: wnpp
Severity: wishlist
Owner: Andrea Capriotti 
X-Debbugs-Cc: debian-de...@lists.debian.org

* Package name: strcase
  Version : 0.1
  Upstream Author : VirtualSquare (project leader Renzo Davoli
)
* URL : http://wiki.virtualsquare.org
* License : LGPL2.1+ and GPL-2+
  Programming Lang: C
  Description : Multiway branch (switch) for short strings in C

 strcase (or strcase_tolower) can be used in the expression of a switch
 statement to convert a string to an integer type, STRCASE generates  at
 compile time the integer constants for the case stanzas of the switch.

See for more information: https://bugs.debian.org/cgi-
bin/bugreport.cgi?bug=939665



Bug#965296: ITP: userbindmount -- bind-mount in user namespaces

2020-07-18 Thread Andrea Capriotti
Package: wnpp
Severity: wishlist
Owner: Andrea Capriotti 
X-Debbugs-Cc: debian-de...@lists.debian.org

* Package name: userbindmount
  Version : 0.1
  Upstream Author : VirtualSquare (Renzo Davoli )
* URL : http://wiki.virtualsquare.org
* License : LGPL2.1+ and GPL-2+
  Programming Lang: C
  Description : bind-mount in user namespaces

 Bind mount files and create user namespaces where bind mount is allowed
 as users. It does not need root access or specific capabilities to run
 (provided user-namespaces are supported)

See for more information:

https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=939665



Bug#965297: ITP: libvolatilestream -- stdio stream as volatile memory buffers

2020-07-18 Thread Andrea Capriotti
Package: wnpp
Severity: wishlist
Owner: Andrea Capriotti 
X-Debbugs-Cc: debian-de...@lists.debian.org

* Package name: libvolatilestream
  Version : 0.1
  Upstream Author : VirtualSquare (Renzo Davoli )
* URL : http://www.virtualsquare.org/
* License : LGPL2.1+ and GPL-2+
  Programming Lang: C
  Description : stdio stream as volatile memory buffers

 A volatile stream is a stdio FILE* stream as a temporary dynamically
 allocated (and deallocated) memory buffer.
 The volstream_open function opens a stdio stream as a temporary memory
 buffer. The buffer is dynamically  allocated, grows as needed and it is
 automatically deallocated when the stream is closed.

See for more information:

https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=939665