Bug#908117: RFP: yq -- yq is a lightweight and portable command-line YAML processor The aim of the project is to be the jq or sed of yaml files.

[Roberto Mier Escandon]

Hi Dominik,
The word 'guys' is enough inclusive. See the second acceptation of
https://www.wordreference.com/definition/guys. I've been using for a long
time that greeting in environments of boys, girls or transexuals and I've
never received a complain till reading your not fair mail answer. What is
not inclusive is banning expressions. That thought manipulation leads to
communism and sadly my country is at the gates of that due to general
thoughts like that during years.

Related to the packaging, forget it. It is not too late, but after
requesting the ITP I realized that golang 1.13 was needed along with some
vendor dependencies which I'm not sure they will be available in the os
when needed. (I know there were too much problematic dependencies, but my
tiny mind does not remember the details now).

Sorry for the noise. I think I can continue exposing it in my ppa for now.
If you give it a try to package and need some help, just let me know.

Cheers.

El mar., 24 mar. 2020 a las 23:36, Dominik George ()
escribió:

> Hi,
>
> > Hi guys,
>
> Please try to be inclusive of other genders ☺. (Proposal: Hi folks; Hi
> people;
> Hi friends,…)
>
> >
> > I see this thread in ITP status. However, I wonder if this is still in
> > process of being packaged.
> >
> > I've been maintaining the deb packages for such yq tool at my ppa
> > (https://launchpad.net/~rmescandon/+archive/ubuntu/ppa/) but I wanted to
> > step forward a little bit more by polishing and formatting everything
> > that is needed for having yq into the debian upstream.
> >
> > Could it be possible for me to take this ITP thread and give it a go?
>
> I also jsut wanted to start work on a yq package for Debian. I think a
> month
> later it is ok for you to setyourself as the owner of this ITP bug and take
> over the packaging.
>
> Please, if you start working, do so in a repository on salsa.debian.org. I
> will happily mentor you and if that goes well sponsor your upload.
>
> Cheers,
> Nik
>
>

Processed: closing 947372

[Debian Bug Tracking System]

Processing commands for cont...@bugs.debian.org:

> close 947372 2.1.2-1
Bug #947372 [wnpp] ITP: librm -- FritzBox router manager library
There is no source info for the package 'wnpp' at version '2.1.2-1' with 
architecture ''
Unable to make a source version for version '2.1.2-1'
Marked as fixed in versions 2.1.2-1.
Bug #947372 [wnpp] ITP: librm -- FritzBox router manager library
Marked Bug as done
> thanks
Stopping processing here.

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Bug#954913: ITP: r-cran-rcdklibs -- the CDK libraries packaged for GNU R

[Andreas Tille]

Package: wnpp
Severity: wishlist

Subject: ITP: r-cran-rcdklibs -- the CDK libraries packaged for GNU R
Package: wnpp
Owner: Andreas Tille 
Severity: wishlist

* Package name: r-cran-rcdklibs
  Version : 2.3
  Upstream Author : Rajarshi Guha,
* URL : https://cran.r-project.org/package=rcdklibs
* License : LGPL-2
  Programming Lang: GNU R
  Description : the CDK libraries packaged for GNU R
 An R interface to the Chemistry Development Kit, a Java library for
 chemoinformatics. Given the size of the library itself, this package is
 not expected to change very frequently. To make use of the CDK within R,
 it is suggested that you use the 'rcdk' package. Note that it is
 possible to directly interact with the CDK using 'rJava'. However 'rcdk'
 exposes functionality in a more idiomatic way. The CDK library itself is
 released as LGPL and the sources can be obtained from
 .

Remark: This package is maintained by Debian R Packages Maintainers at
   https://salsa.debian.org/r-pkg-team/r-cran-rcdklibs

Processed: ITP: r-cran-rcdklibs -- the CDK libraries packaged for GNU R

[Debian Bug Tracking System]

Processing commands for cont...@bugs.debian.org:

> owner 954913 Andreas Tille 
Bug #954913 [wnpp] ITP: r-cran-rcdklibs -- the CDK libraries packaged for GNU R
Owner recorded as Andreas Tille .
>
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Bug#952584: marked as done (ITP: r-cran-metafor -- Meta-Analysis Package for R)

[Debian Bug Tracking System]

Your message dated Wed, 25 Mar 2020 09:00:11 +
with message-id 
and subject line Bug#952584: fixed in r-cran-metafor 2.1-0-1
has caused the Debian Bug report #952584,
regarding ITP: r-cran-metafor -- Meta-Analysis Package for R
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
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--- Begin Message ---
Package: wnpp
Severity: wishlist

Subject: ITP: r-cran-metafor -- Meta-Analysis Package for R
Package: wnpp
Owner: Andreas Tille 
Severity: wishlist

* Package name: r-cran-metafor
  Version : 2.1
  Upstream Author : Wolfgang Viechtbauer
* URL : https://cran.r-project.org/package=metafor
* License : GPL-2+
  Programming Lang: GNU R
  Description : Meta-Analysis Package for R
 A comprehensive collection of functions for conducting meta-analyses in
 R. The package includes functions to calculate various effect sizes or
 outcome measures, fit fixed-, random-, and mixed-effects models to such
 data, carry out moderator and meta-regression analyses, and create
 various types of meta-analytical plots (e.g., forest, funnel, radial,
 L'Abbe, Baujat, GOSH plots). For meta-analyses of binomial and person-
 time data, the package also provides functions that implement
 specialized methods, including the Mantel-Haenszel method, Peto's
 method, and a variety of suitable generalized linear (mixed-effects)
 models (i.e., mixed-effects logistic and Poisson regression models).
 Finally, the package provides functionality for fitting meta-analytic
 multivariate/multilevel models that account for non-independent sampling
 errors and/or true effects (e.g., due to the inclusion of multiple
 treatment studies, multiple endpoints, or other forms of clustering).
 Network meta-analyses and meta-analyses accounting for known correlation
 structures (e.g., due to phylogenetic relatedness) can also be
 conducted.

Remark: This package is maintained by Debian R Packages Maintainers at
   https://salsa.debian.org/r-pkg-team/r-cran-metafor
--- End Message ---
--- Begin Message ---
Source: r-cran-metafor
Source-Version: 2.1-0-1
Done: Andreas Tille 

We believe that the bug you reported is fixed in the latest version of
r-cran-metafor, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 952...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Andreas Tille  (supplier of updated r-cran-metafor package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


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Binary: r-cran-metafor
Architecture: source all
Version: 2.1-0-1
Distribution: unstable
Urgency: medium
Maintainer: Debian R Packages Maintainers 
Changed-By: Andreas Tille 
Description:
 r-cran-metafor - Meta-Analysis Package for R
Closes: 952584
Changes:
 r-cran-metafor (2.1-0-1) unstable; urgency=medium
 .
   * Initial release (closes: #952584)
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Bug#951575: marked as done (ITP: r-bioc-demixt -- Cell type-specific deconvolution of heterogeneous tumor samples)

[Debian Bug Tracking System]

Your message dated Wed, 25 Mar 2020 09:00:10 +
with message-id 
and subject line Bug#951575: fixed in r-bioc-demixt 1.2.5-1
has caused the Debian Bug report #951575,
regarding ITP: r-bioc-demixt -- Cell type-specific deconvolution of 
heterogeneous tumor samples
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

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--- Begin Message ---
Package: wnpp
Severity: wishlist

Subject: ITP: r-bioc-demixt -- Cell type-specific deconvolution of 
heterogeneous tumor samples
Package: wnpp
Owner: Steffen Moeller 
Severity: wishlist

* Package name: r-bioc-demixt
  Version : 1.2.5
  Upstream Author : Copyright: (FIXME: year)-2020 Zeya Wang 
, Shaolong
* URL : https://bioconductor.org/packages/DeMixT/
* License : GPL-3
  Programming Lang: GNU R
  Description : Cell type-specific deconvolution of heterogeneous tumor 
samples
 When studying cancer cells from tumors excised from patients, the samples
 will be a mixture of tumors and healthy cells, e.g. from invading immune cells.
 For comparing samples, the interest may be more on comparing the transcriptome
 of the tumors themselves.
 .
 This package prepares the statistical separation (deconvolution)
 of RNAseq or microarray generated expression data for two or three
 components.

Remark: This package is maintained by Debian R Packages Maintainers at
   https://salsa.debian.org/r-pkg-team/r-bioc-demixt
--- End Message ---
--- Begin Message ---
Source: r-bioc-demixt
Source-Version: 1.2.5-1
Done: Andreas Tille 

We believe that the bug you reported is fixed in the latest version of
r-bioc-demixt, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 951...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Andreas Tille  (supplier of updated r-bioc-demixt package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sun, 22 Mar 2020 08:21:52 +0100
Source: r-bioc-demixt
Binary: r-bioc-demixt r-bioc-demixt-dbgsym
Architecture: source amd64
Version: 1.2.5-1
Distribution: unstable
Urgency: medium
Maintainer: Debian R Packages Maintainers 
Changed-By: Andreas Tille 
Description:
 r-bioc-demixt - Cell type-specific deconvolution of heterogeneous tumor samples
Closes: 951575
Changes:
 r-bioc-demixt (1.2.5-1) unstable; urgency=medium
 .
   * Team upload.
   * Initial release (closes: #951575)
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r-bioc-demixt_

Processed (with 1 error): your mail

[Debian Bug Tracking System]

Processing commands for cont...@bugs.debian.org:

> merge 833024 900124
Bug #833024 [wnpp] RFP: javolution -- Real-time java library
Unable to merge bugs because:
blocks of #900124 is '' not '812562'
blockedby of #900124 is '' not '700679'
owner of #900124 is 'Andreas Tille ' not ''
Failed to merge 833024: Did not alter merged bugs.

>
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Processed (with 1 error): your mail

[Debian Bug Tracking System]

Processing commands for cont...@bugs.debian.org:

> forcemerge 833024 900124
Bug #833024 [wnpp] RFP: javolution -- Real-time java library
Bug #900124 [wnpp] ITP: libjavolution-java -- Java core library for real-time 
and embedded systems
812562 was blocked by: 833024 812563
812562 was not blocking any bugs.
Added blocking bug(s) of 812562: 900124
No valid blocking bug(s) given; not doing anything
Failed to forcibly merge 833024: Failure while trying to adjust bugs, please 
report this as a bug: Unknown/archived blocking bug(s):700679.
 at /usr/local/lib/site_perl/Debbugs/Control.pm line 2133.

>
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Bug#954937: RFP: maven-remote-resources-plugin

[Mathieu Malaterre]

Package: wnpp
Severity: wishlist

* Package name: maven-remote-resources-plugin
  Version : 1.7.0
  Upstream Author : apache
* URL :
http://maven.apache.org/plugins/maven-remote-resources-plugin/
* License : Apache-2
  Programming Lang: Java
  Description : Apache Maven Remote Resources Plugin

 This plugin is used to retrieve JARs of resources from remote
repositories, process those
 resources, and incorporate them into JARs you build with Maven.
 .
 A very common use-case is the need to package certain resources in a
consistent way across
 your organization. For example at Apache, it is required that every
JAR produced contains a copy
 of the Apache license and a notice file that references all used
software in a given project: see
 Apache Resource Bundles.

Processed (with 1 error): your mail

[Debian Bug Tracking System]

Processing commands for cont...@bugs.debian.org:

> retitle 896574 "ITA: bibutils -- interconvert various bibliographic data
Bug #896574 [wnpp] RFA: bibutils -- interconvert various bibliographic data 
formats
Changed Bug title to '"ITA: bibutils -- interconvert various bibliographic 
data' from 'RFA: bibutils -- interconvert various bibliographic data formats'.
> formats"
Unknown command or malformed arguments to command.
> owner 896574 !
Bug #896574 [wnpp] "ITA: bibutils -- interconvert various bibliographic data
Owner recorded as Pierre Gruet .
> thanks
Stopping processing here.

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Processing commands for cont...@bugs.debian.org:

> retitle 896574 ITA: bibutils -- interconvert various bibliographic data
Bug #896574 [wnpp] "ITA: bibutils -- interconvert various bibliographic data
Changed Bug title to 'ITA: bibutils -- interconvert various bibliographic data' 
from '"ITA: bibutils -- interconvert various bibliographic data'.
> formats
Unknown command or malformed arguments to command.
> thanks
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Bug#954942: ITP: chip-seq -- tools performing common ChIP-Seq data analysis tasks

[Andreas Tille]

Package: wnpp
Severity: wishlist

Subject: ITP: chip-seq -- tools performing common ChIP-Seq data analysis tasks
Package: wnpp
Owner: Andreas Tille 
Severity: wishlist

* Package name: chip-seq
  Version : 1.5.5
  Upstream Author : Giovanna Ambrosini and René Dreos and Sunil Kumar and 
Philipp Bucher
* URL : https://ccg.epfl.ch//chipseq
* License : GPL-3+
  Programming Lang: C
  Description : tools performing common ChIP-Seq data analysis tasks
 The ChIP-Seq software provides a set of tools performing common genome-
 wide ChIP- seq analysis tasks, including positional correlation
 analysis, peak detection, and genome partitioning into signal-rich and
 signal-poor regions. These tools exist as stand-alone C programs and
 perform the following tasks:
 .
  1. Positional correlation analysis and generation of an aggregation
 plot (AP) (chipcor),
  2. Extraction of specific genome annotation features around reference
 anchor points (chipextract),
  3. Read centering or shifting (chipcenter),
  4. Narrow peak caller using a fixed width peak size (chippeak),
  5. Broad peak caller used for large regions of enrichment (chippart),
  6. Feature selection tool based on a read count threshold (chipscore).
 .
 Because the ChIP-Seq tools are primarily optimized for speed, they use
 their own compact format for ChIP-seq data representation called SGA
 (Simplified Genome Annotation). SGA is a line-oriented, tab-delimited
 plain text format.

Remark: This package is maintained by Debian Med Packaging Team at
   https://salsa.debian.org/med-team/chip-seq

Processed: ITP: chip-seq -- tools performing common ChIP-Seq data analysis tasks

[Debian Bug Tracking System]

Processing commands for cont...@bugs.debian.org:

> owner 954942 Andreas Tille 
Bug #954942 [wnpp] ITP: chip-seq -- tools performing common ChIP-Seq data 
analysis tasks
Owner recorded as Andreas Tille .
>
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Processed: Re: Bug#952855: Acknowledgement (ITP: razercommander -- GTK contol center for managing Razer peripherals)

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Processing commands for cont...@bugs.debian.org:

> retitle 952855 RFP: razercommander -- GTK contol center for managing Razer 
> peripherals
Bug #952855 [wnpp] ITP: razercommander -- GTK contol center for managing Razer 
peripherals
Changed Bug title to 'RFP: razercommander -- GTK contol center for managing 
Razer peripherals' from 'ITP: razercommander -- GTK contol center for managing 
Razer peripherals'.
>
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Bug#954951: ITP: libcompiler-lexer-perl -- Lexical Analyzer for Perl5

[Dominique Dumont]

Package: wnpp
Owner: Dominique Dumont 
Severity: wishlist
X-Debbugs-CC: debian-de...@lists.debian.org, debian-p...@lists.debian.org

* Package name: libcompiler-lexer-perl
  Version : 0.23
  Upstream Author : Masaaki Goshima (goccy) 
* URL : https://metacpan.org/release/Compiler-Lexer
* License : Artistic or GPL-1+
  Programming Lang: Perl
  Description : Lexical Analyzer for Perl5

Compiler::Lexer provides a lexical analyser for Perl code. Once the Perl
code is parsed, the lexer can provide:
 * a list of tokens
 * the list of module used by the Perl code.

This module is written in XS to be faster than a pure Perl
implementation.

This module is a dependency of libdist-zilla-plugin-minimumperlfast-perl which 
I plan to package.

The package will be maintained under the umbrella of the Debian Perl Group.

Processed: RFP: razercommander -- GTK contol center for managing Razer peripherals

[Debian Bug Tracking System]

Processing commands for cont...@bugs.debian.org:

> noowner 952855
Bug #952855 [wnpp] RFP: razercommander -- GTK contol center for managing Razer 
peripherals
Removed annotation that Bug was owned by Michael Lustfield 
.
>
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Bug#954956: ITP: dacite -- create data classes from dictionaries

[Valentin Vidic]

Package: wnpp
Severity: wishlist
Owner: Valentin Vidic 

* Package name: dacite
  Version : 1.3.0
  Upstream Author : Konrad Hałas 
* URL : https://github.com/konradhalas/dacite
* License : MIT
  Programming Lang: Python
  Description : create data classes from dictionaries

Python library that simplifies creation of data classes (PEP 557) from
dictionaries.

This module is required for the new version of the pcs package and will
be maintained by the DPMT on salsa.

Bug#953821: marked as done (ITP: dnapi -- adapter prediction for small RNA sequencing - utils)

[Debian Bug Tracking System]

Your message dated Wed, 25 Mar 2020 22:00:11 +
with message-id 
and subject line Bug#953821: fixed in dnapi 1.1-1
has caused the Debian Bug report #953821,
regarding ITP: dnapi -- adapter prediction for small RNA sequencing - utils
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
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-- 
953821: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=953821
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: wnpp
Severity: wishlist

Subject: ITP: dnapi -- adapter prediction for small RNA sequencing - utils
Package: wnpp
Owner: Steffen Moeller 
Severity: wishlist

* Package name: dnapi
  Version : 1.1
  Upstream Author : , 2016 Junko Tsuji
* URL : https://github.com/jnktsj/DNApi/
* License : MIT
  Programming Lang: Python
  Description : adapter prediction for small RNA sequencing - utils
 de novo adapter prediction (iterative) algorithm for small RNA sequencing
 data.

Remark: This package is maintained by Debian Med Packaging Team at
   https://salsa.debian.org/med-team/dnapi
--- End Message ---
--- Begin Message ---
Source: dnapi
Source-Version: 1.1-1
Done: Steffen Moeller 

We believe that the bug you reported is fixed in the latest version of
dnapi, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 953...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Steffen Moeller  (supplier of updated dnapi package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Fri, 13 Mar 2020 21:08:02 +0100
Source: dnapi
Binary: dnapi dnapi-examples python3-dnapilib
Architecture: source all
Version: 1.1-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 

Changed-By: Steffen Moeller 
Description:
 dnapi  - adapter prediction for small RNA sequencing - utils
 dnapi-examples - adapter prediction for small RNA sequencing - examples
 python3-dnapilib - adapter prediction for small RNA sequencing - library
Closes: 953821
Changes:
 dnapi (1.1-1) unstable; urgency=medium
 .
   * Initial release (Closes: #953821)
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