Processed: python-rtslib-fb: New upstream version available

2019-08-05 Thread Debian Bug Tracking System 
Processing control commands:

> block 933350 by -1
Bug #933350 [wnpp] ITP: ceph-iscsi -- common logic and CLI tools for creating 
and managing LIO gateways for Ceph
933350 was not blocked by any bugs.
933350 was not blocking any bugs.
Added blocking bug(s) of 933350: 933929

-- 
933350: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=933350
933929: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=933929
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems

Bug#693230: Bug#806572: RFS: multimail/0.50~20150922-1 [ITA]

2019-08-05 Thread Mattia Rizzolo 
[ dropping #806572 as that bug is closed and archived  ]

Hi,

On Thu, Aug 01, 2019 at 01:47:37PM -0300, Fernando Toledo wrote:
> https://github.com/ftoledo/pkg-multimail
> 
> I upload to mentors:
> https://mentors.debian.net/package/multimail
> 
> I see that the package is orphaned, i can adopt it, but i'm not DD, how
> to can i help and procced to upload to unstable?

The process to adopt a package is described here:
https://www.debian.org/devel/wnpp/#howto-o

Bart Martens already changed the metadata of #693230 to match your
intentions.

The next step for you would be to seek a sponsor to review and upload
your package.  I'm generally happy to do that, however since this would
be your first package in Debian I'd like to understand what is your
knowledge of things like the BTS, what you followed (if anything) to
work with the packaging, etc.

The fact that mentors.d.n is all green on your package is a good sign,
but also I see you are not closing this bug report (#693230) with your
upload, so something is missing.

I'll be happy to review your package once you answer the above; for more
details on my usual workflow and requirements, see
https://people.debian.org/~mattia/sponsoring.html

-- 
regards,
Mattia Rizzolo

GPG Key: 66AE 2B4A FCCF 3F52 DA18  4D18 4B04 3FCD B944 4540  .''`.
more about me:  https://mapreri.org : :'  :
Launchpad user: https://launchpad.net/~mapreri  `. `'`
Debian QA page: https://qa.debian.org/developer.php?login=mattia  `-


signature.asc
Description: PGP signature

Bug#926944: marked as done (ITP: atropos -- NGS read trimming tool that is specific, sensitive, and speedy)

2019-08-05 Thread Debian Bug Tracking System 
Your message dated Mon, 05 Aug 2019 10:00:10 +
with message-id 
and subject line Bug#926944: fixed in atropos 1.1.21+dfsg-1
has caused the Debian Bug report #926944,
regarding ITP: atropos -- NGS read trimming tool that is specific, sensitive, 
and speedy
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
926944: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=926944
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: wnpp
Severity: wishlist

Subject: ITP: atropos -- NGS read trimming tool that is specific, sensitive, 
and speedy
Package: wnpp
Owner: Andreas Tille 
Severity: wishlist

* Package name: atropos
  Version : 1.1.21
  Upstream Author : Marcel Martin 
* URL : https://github.com/jdidion/atropos
* License : Expat
  Programming Lang: Python
  Description : NGS read trimming tool that is specific, sensitive, and 
speedy
 Atropos is tool for specific, sensitive, and speedy trimming of NGS
 reads. It is a fork of the venerable Cutadapt read trimmer, with the
 primary improvements being:
 .
   1. Multi-threading support, including an extremely fast "parallel
  write" mode.
   2. Implementation of a new insert alignment-based trimming algorithm
  for paired-end reads that is substantially more sensitive and
  specific than the original Cutadapt adapter alignment-based
  algorithm. This algorithm can also correct mismatches between the
  overlapping portions of the reads.
   3. Options for trimming specific types of data (miRNA, bisulfite-seq).
   4. A new command ('detect') that will detect adapter sequences and
  other potential contaminants.
   5. A new command ('error') that will estimate the sequencing error
  rate, which helps to select the appropriate adapter- and quality-
  trimming parameter values.
   6. A new command ('qc') that generates read statistics similar to
  FastQC. The trim command can also compute read statistics both
  before and after trimming (using the '--stats' option).
   7. Improved summary reports, including support for serialization
  formats (JSON, YAML, pickle), support for user-defined templates
  (via the optional Jinja2 dependency), and integration with MultiQC.
   8. The ability to merge overlapping reads (this is experimental and
  the functionality is limited).
   9. The ability to write the summary report and log messages to
  separate files.
  10. The ability to read SAM/BAM files and read/write interleaved
  FASTQ files.
  11. Direct trimming of reads from an SRA accession.
  12. A progress bar, and other minor usability enhancements.

Remark: This package is maintained by Debian Med Packaging Team at
   https://salsa.debian.org/med-team/atropos
--- End Message ---
--- Begin Message ---
Source: atropos
Source-Version: 1.1.21+dfsg-1

We believe that the bug you reported is fixed in the latest version of
atropos, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 926...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Andreas Tille  (supplier of updated atropos package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


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Date: Sun, 04 Aug 2019 21:50:09 +0200
Source: atropos
Binary: atropos
Architecture: source amd64
Version: 1.1.21+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 

Changed-By: Andreas Tille 
Description:
 atropos- NGS read trimming tool that is specific, sensitive, and speedy
Closes: 926944
Changes:
 atropos (1.1.21+dfsg-1) unstable; urgency=medium
 .
   * Initial release (Closes: #926944)
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Bug#925417: marked as done (ITP: kallisto -- near-optimal RNA-Seq quantification)

2019-08-05 Thread Debian Bug Tracking System 
Your message dated Mon, 05 Aug 2019 10:00:11 +
with message-id 
and subject line Bug#925417: fixed in kallisto 0.45.1+dfsg-1
has caused the Debian Bug report #925417,
regarding ITP: kallisto -- near-optimal RNA-Seq quantification
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
925417: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=925417
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: wnpp
Severity: wishlist

Subject: ITP: kallisto -- near-optimal RNA-Seq quantification
Package: wnpp
Owner: Andreas Tille 
Severity: wishlist

* Package name: kallisto
  Version : 0.45.1
  Upstream Author : Nicolas Bray, Harold Pimentel, Páll Melsted and Lior Pachter
* URL : https://pachterlab.github.io/kallisto
* License : BSD-2-Clause
  Programming Lang: C
  Description : near-optimal RNA-Seq quantification
 Kallisto is a program for quantifying abundances of transcripts from
 RNA-Seq data, or more generally of target sequences using high-throughput
 sequencing reads. It is based on the novel idea of pseudoalignment for
 rapidly determining the compatibility of reads with targets, without the
 need for alignment. On benchmarks with standard RNA-Seq data, kallisto
 can quantify 30 million human reads in less than 3 minutes on a Mac
 desktop computer using only the read sequences and a transcriptome index
 that itself takes less than 10 minutes to build. Pseudoalignment of
 reads preserves the key information needed for quantification, and
 kallisto is therefore not only fast, but also as accurate than existing
 quantification tools. In fact, because the pseudoalignment procedure is
 robust to errors in the reads, in many benchmarks kallisto significantly
 outperforms existing tools.

Remark: This package is maintained by Debian Med Packaging Team at
   https://salsa.debian.org/med-team/kallisto
--- End Message ---
--- Begin Message ---
Source: kallisto
Source-Version: 0.45.1+dfsg-1

We believe that the bug you reported is fixed in the latest version of
kallisto, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 925...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Andreas Tille  (supplier of updated kallisto package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


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Hash: SHA256

Format: 1.8
Date: Sun, 24 Mar 2019 21:53:40 +0100
Source: kallisto
Binary: kallisto kallisto-examples
Architecture: source amd64 all
Version: 0.45.1+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 

Changed-By: Andreas Tille 
Description:
 kallisto   - near-optimal RNA-Seq quantification
 kallisto-examples - near-optimal RNA-Seq quantification (example data)
Closes: 925417
Changes:
 kallisto (0.45.1+dfsg-1) unstable; urgency=medium
 .
   * Initial release (Closes: #925417)
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Bug#932294: marked as done (ITP: skesa -- strategic Kmer extension for scrupulous assemblies)

2019-08-05 Thread Debian Bug Tracking System 
Your message dated Mon, 05 Aug 2019 10:00:13 +
with message-id 
and subject line Bug#932294: fixed in skesa 2.3.0-1
has caused the Debian Bug report #932294,
regarding ITP: skesa -- strategic Kmer extension for scrupulous assemblies
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
932294: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=932294
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: wnpp
Severity: wishlist

Subject: ITP: skesa -- strategic Kmer extension for scrupulous assemblies
Package: wnpp
Owner: Andreas Tille 
Severity: wishlist

* Package name: skesa
  Version : 2.3.0
  Upstream Author : Alexandre Souvorov, Richa Agarwala, David J. Lipman
* URL : https://github.com/ncbi/SKESA
* License : public_domain
  Programming Lang: C++
  Description : strategic Kmer extension for scrupulous assemblies
 SKESA is a DeBruijn graph-based de-novo assembler designed for
 assembling reads of microbial genomes sequenced using Illumina.
 Comparison with SPAdes and MegaHit shows that SKESA produces assemblies
 that have high sequence quality and contiguity, handles low-level
 contamination in reads, is fast, and produces an identical assembly for
 the same input when assembled multiple times with the same or different
 compute resources. SKESA has been used for assembling over 272,000 read
 sets in the Sequence Read Archive at NCBI and for real-time pathogen
 detection.

Remark: This package is maintained by Debian Med Packaging Team at
   https://salsa.debian.org/med-team/skesa
--- End Message ---
--- Begin Message ---
Source: skesa
Source-Version: 2.3.0-1

We believe that the bug you reported is fixed in the latest version of
skesa, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 932...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Andreas Tille  (supplier of updated skesa package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


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Format: 1.8
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Source: skesa
Binary: skesa skesa-dbgsym
Architecture: source amd64
Version: 2.3.0-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 

Changed-By: Andreas Tille 
Description:
 skesa  - strategic Kmer extension for scrupulous assemblies
Closes: 932294
Changes:
 skesa (2.3.0-1) unstable; urgency=medium
 .
   * Initial release (Closes: #932294)
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Bug#933343: marked as done (ITP: tcmu -- handles the userspace side of the LIO TCM-User backstore)

2019-08-05 Thread Debian Bug Tracking System 
Your message dated Mon, 05 Aug 2019 11:00:25 +
with message-id 
and subject line Bug#933343: fixed in tcmu 1.4.0-1
has caused the Debian Bug report #933343,
regarding ITP: tcmu -- handles the userspace side of the LIO TCM-User backstore
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
933343: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=933343
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: wnpp
Severity: wishlist
Owner: Sebastien Delafond 

* Package name: tcmu
  Version : 1.4.0
  URL : https://github.com/open-iscsi/tcmu-runner
* License : LGPL 2.1 & Apache 2.0
  Programming Lang: C
  Description : handles the userspace side of the LIO TCM-User backstore

LIO is the SCSI target in the Linux kernel. It is entirely kernel
code, and allows exported SCSI logical units (LUNs) to be backed by
regular files or block devices. But, if we want to get fancier with
the capabilities of the device we're emulating, the kernel is not
necessarily the right place. While there are userspace libraries for
compression, encryption, and clustered storage solutions like Ceph or
Gluster, these are not accessible from the kernel.
.
The TCMU userspace-passthrough backstore allows a userspace process
to handle requests to a LUN. But since the kernel-user interface that
TCMU provides must be fast and flexible, it is complex enough that
we'd like to avoid each userspace handler having to write boilerplate
code.
.
tcmu-runner handles the messy details of the TCMU interface -- UIO,
netlink, pthreads, and DBus -- and exports a more friendly C plugin
module API. Modules using this API are called "TCMU
handlers". Handler authors can write code just to handle the SCSI
commands as desired, and can also link with whatever userspace
libraries they like.
--- End Message ---
--- Begin Message ---
Source: tcmu
Source-Version: 1.4.0-1

We believe that the bug you reported is fixed in the latest version of
tcmu, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 933...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Sebastien Delafond  (supplier of updated tcmu package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


-BEGIN PGP SIGNED MESSAGE-
Hash: SHA512

Format: 1.8
Date: Mon, 29 Jul 2019 16:01:03 +0200
Source: tcmu
Binary: libtcmu2 libtcmu2-dbgsym tcmu-runner tcmu-runner-dbgsym
Architecture: source amd64
Version: 1.4.0-1
Distribution: unstable
Urgency: medium
Maintainer: Freexian Packaging Team 
Changed-By: Sebastien Delafond 
Description:
 libtcmu2   - Library that handles the userspace side of the LIO TCM-User backs
 tcmu-runner - Daemon that handles the userspace side of the LIO TCM-User backst
Closes: 933343
Changes:
 tcmu (1.4.0-1) unstable; urgency=medium
 .
   * First release (Closes: #933343)
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Bug#925500: marked as done (ITP: shapeit4 -- fast and accurate method for estimation of haplotypes)

2019-08-05 Thread Debian Bug Tracking System 
Your message dated Mon, 05 Aug 2019 11:00:23 +
with message-id 
and subject line Bug#925500: fixed in shapeit4 0.0.0+git20181214+dfsg-1
has caused the Debian Bug report #925500,
regarding ITP: shapeit4 -- fast and accurate method for estimation of haplotypes
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
925500: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=925500
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: wnpp
Owner: Debian Med Packaging Team 
Severity: wishlist

Package name: shapeit4
Upstream Author : Olivier Delaneau
URL: https://odelaneau.github.io/shapeit4/
License: Expat
Description: fast and accurate method for estimation of haplotypes (phasing)
 Segmented HAPlotype Estimation and Imputation Tools version 4 (SHAPEIT4).
 SHAPEIT4 is a fast and accurate method for estimation of haplotypes (aka
 phasing) for SNP array and sequencing data.

This package will be maintained by the Debian Med Packaging Team at:
https://salsa.debian.org/med-team/shapeit4
--- End Message ---
--- Begin Message ---
Source: shapeit4
Source-Version: 0.0.0+git20181214+dfsg-1

We believe that the bug you reported is fixed in the latest version of
shapeit4, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 925...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Dylan Aïssi  (supplier of updated shapeit4 package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


-BEGIN PGP SIGNED MESSAGE-
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Date: Mon, 25 Mar 2019 22:28:07 +0100
Source: shapeit4
Binary: shapeit4 shapeit4-dbgsym shapeit4-example
Architecture: source amd64 all
Version: 0.0.0+git20181214+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 

Changed-By: Dylan Aïssi 
Description:
 shapeit4   - fast and accurate method for estimation of haplotypes (phasing)
 shapeit4-example - fast and accurate method for estimation of haplotypes 
(phasing) -
Closes: 925500
Changes:
 shapeit4 (0.0.0+git20181214+dfsg-1) unstable; urgency=medium
 .
   * Initial release. (Closes: #925500)
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Bug#919718: marked as done (ITP: igdiscover -- analyse immune repertoire to find new V genes)

2019-08-05 Thread Debian Bug Tracking System 
Your message dated Mon, 05 Aug 2019 11:00:17 +
with message-id 
and subject line Bug#919718: fixed in igdiscover 0.11-1
has caused the Debian Bug report #919718,
regarding ITP: igdiscover -- analyse immune repertoire to find new V genes
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
919718: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=919718
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: wnpp
Severity: wishlist
Owner: Steffen Moeller 

* Package name: igdiscover
  Version : 0.11
* URL : https://github.com/NBISweden/IgDiscover
* License : MIT/X
  Programming Lang: Python
  Description : analyse immune repertoire to find new V genes

To be co-maintained on https://salsa.debian.org/med-team/igdiscover
--- End Message ---
--- Begin Message ---
Source: igdiscover
Source-Version: 0.11-1

We believe that the bug you reported is fixed in the latest version of
igdiscover, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 919...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Steffen Moeller  (supplier of updated igdiscover package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


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Date: Tue, 22 Jan 2019 16:49:23 +0100
Source: igdiscover
Binary: igdiscover igdiscover-doc
Architecture: source all
Version: 0.11-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 

Changed-By: Steffen Moeller 
Description:
 igdiscover - analyzes antibody repertoires to find new V genes
 igdiscover-doc - analyzes antibody repertoires to find new V genes - doc
Closes: 919718
Changes:
 igdiscover (0.11-1) unstable; urgency=medium
 .
   * Initial release (Closes: #919718)
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Bug#931148: marked as done (ITP: labelme -- Image Polygonal Annotation with Python)

2019-08-05 Thread Debian Bug Tracking System 
Your message dated Mon, 05 Aug 2019 12:00:11 +
with message-id 
and subject line Bug#931148: fixed in labelme 3.16.1-1
has caused the Debian Bug report #931148,
regarding ITP: labelme -- Image Polygonal Annotation with Python
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
931148: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=931148
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---

Package: wnpp
Severity: wishlist

* Package name: labelme
  Version : 3.16.1
  Upstream Authors: Kentaro Wada, Michael Pitidis, Hussein Abdulwahid
* URL : https://github.com/wkentaro/labelme
* License : GPL-3+
  Description : Image Polygonal Annotation with Python
 This is a graphical image annotation tool inspired by
 http://labelme.csail.mit.edu. It is written in Python and uses Qt for 
its

 graphical interface.

Package will be availabe at http://phd-sid.ethz.ch/debian/labelme/
--- End Message ---
--- Begin Message ---
Source: labelme
Source-Version: 3.16.1-1

We believe that the bug you reported is fixed in the latest version of
labelme, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 931...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Gürkan Myczko  (supplier of updated labelme package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


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Source: labelme
Binary: labelme labelme-examples
Architecture: source all amd64
Version: 3.16.1-1
Distribution: unstable
Urgency: medium
Maintainer: Gürkan Myczko 
Changed-By: Gürkan Myczko 
Description:
 labelme- Image Polygonal Annotation with Python
 labelme-examples - Image Polygonal Annotation with Python, examples
Closes: 931148
Changes:
 labelme (3.16.1-1) unstable; urgency=medium
 .
   * Initial release. (Closes: #931148)
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Bug#933946: RFP: libtest-fitesque-rdf-perl -- Formulate Test::FITesque fixture tables in RDF

2019-08-05 Thread Kjetil Kjernsmo 
Package: wnpp
Severity: wishlist

* Package name: libtest-fitesque-rdf-perl
  Version : 0.011
  Upstream Author : Kjetil Kjernsmo 
* URL : https://metacpan.org/pod/Test::FITesque::RDF
* License : MIT
  Programming Lang: Perl
  Description : Formulate Test::FITesque fixture tables in RDF

This module enables the use of Resource Description Framework to
describe fixture tables. 

The RDF serves to identify the implementation of certain fixtures, and
can also supply parameters that can be used by the tests, e.g. input
parameters or expectations. See Test::FITesque for more on how the
fixtures are implemented.

It serves as the implementation of the Solid project test suite.

Bug#925067: marked as done (ITP: indicator-sensors -- Hardware sensors indicator)

2019-08-05 Thread Debian Bug Tracking System 
Your message dated Mon, 05 Aug 2019 13:00:10 +
with message-id 
and subject line Bug#925067: fixed in indicator-sensors 0.9-1
has caused the Debian Bug report #925067,
regarding ITP: indicator-sensors -- Hardware sensors indicator
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
925067: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=925067
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: wnpp
Severity: wishlist
Owner: Graham Inggs 

* Package name: indicator-sensors
  Version : 0.9
  Upstream Author : Alex Murray 
* URL : https://github.com/alexmurray/indicator-sensors
* License : GPL-3+
  Programming Lang: C
  Description : Hardware sensors indicator
Application indicator to display and monitor the readings
from various hardware sensors (temperature, fan speeds, voltages
etc) in the desktop panel for GNOME

This package will be maintained in collab-maint.
--- End Message ---
--- Begin Message ---
Source: indicator-sensors
Source-Version: 0.9-1

We believe that the bug you reported is fixed in the latest version of
indicator-sensors, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 925...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Graham Inggs  (supplier of updated indicator-sensors package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


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Binary: indicator-sensors indicator-sensors-dbgsym
Architecture: source amd64
Version: 0.9-1
Distribution: unstable
Urgency: medium
Maintainer: Graham Inggs 
Changed-By: Graham Inggs 
Description:
 indicator-sensors - Hardware sensors indicator
Closes: 925067
Changes:
 indicator-sensors (0.9-1) unstable; urgency=medium
 .
   * Initial release (Closes: #925067)
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Bug#933949: RFP: libtest-fitesque-perl -- Formulate test fixture tables in data structures

2019-08-05 Thread Kjetil Kjernsmo 
Package: wnpp
Severity: wishlist

* Package name: libtest-fitesque-perl
  Version : 0.04
  Upstream Author : Scott McWhirter 
* URL : https://metacpan.org/pod/Test::FITesque
* License : BSD
  Programming Lang: Perl
  Description : Formulate test fixture tables in data structures

Test::FITesque is a framework designed to emulate the FIT
http://fit.c2.com framework, but with a more perlish touch. While it
is possible to use the FIT framework from within perl, it has a lot of
unnessecary overhead related to its origins in the Java world.

It can be used to formulate tests in a structured manner rather than
rely on doing it within a programming language. Such formulations are
known as fixture tables.

With this, you can
* store fixture tables in whatever format you want (JSON, YAML, Storable, etc)

* simplify the execution process to make it very transparent.

* use the normal Perl testing tools

* save the TAP output to more easily capture test results over time to
track regressions and problematic tests.

It also forms the basis for the Solid project test suite.

Bug#933965: ITP: ecbuild -- ECMWF build system based on CMake

2019-08-05 Thread Alastair McKinstry 
Package: wnpp
Severity: wishlist
Owner: Alastair McKinstry 

* Package name: ecbuild
  Version : 3.0.3
  Upstream Author : ECMWF
* URL : https://github.com/ecmwf/ecbuild
* License : Apache
  Programming Lang: CMake
  Description : ECMWF build system based on CMake

ecBuild is a build system based on CMake macros that are used as a build system 
for ECMWF software.
ECMWF is the European Centre for Medium-Range Weather Forecasts.

It is a Build-dependency of other ECMWF software being packaged.

Bug#933969: ITP: r-cran-corrplot -- Visualization of a Correlation Matrix

2019-08-05 Thread Steffen Moeller 
Package: wnpp
Severity: wishlist
Owner: Steffen Moeller 

* Package name: r-cran-corrplot
* URL : https://cran.r-project.org/package=corrplot
* License : MIT
  Programming Lang: R
  Description : Visualization of a Correlation Matrix

Team maintained on https://salsa.debian.org/r-pkg-team/r-cran-corrplot

Bug#933885: ITP: GNU Health - a hospital information system

2019-08-05 Thread Sakirnth Nagarasa 
Hi Mathias

On 8/4/19 11:00 PM, Mathias Behrle wrote:
> Are you aware of the efforts already done in Debian and on debian.tryton.org.
No, I was not aware. Thank you for informing me.

Cheers,
Saki

Bug#933974: ITP: r-cran-gprofiler -- Interface to the 'g:Profiler' Toolkit

2019-08-05 Thread Steffen Moeller 
Package: wnpp
Severity: wishlist

Subject: ITP: r-cran-gprofiler -- Interface to the 'g:Profiler' Toolkit
Package: wnpp
Owner: Steffen Moeller 
Severity: wishlist

* Package name: r-cran-gprofiler
  Version : 0.6.7
  Upstream Author : Juri Reimand 
* URL : https://cran.r-project.org/package=gProfileR
* License : MIT
  Programming Lang: GNU R
  Description : Interface to the 'g:Profiler' Toolkit
 Functional enrichment analysis, gene identifier conversion and
 mapping homologous genes across related organisms via the 'g:Profiler' toolkit
 ().

Remark: This package is maintained by Debian R Packages Maintainers at
   https://salsa.debian.org/r-pkg-team/r-cran-gprofiler

Bug#933975: ITP: trim-galore -- automate quality and adapter trimming for DNA sequencing

2019-08-05 Thread Steffen Moeller 
Package: wnpp
Severity: wishlist

Subject: ITP: trim-galore -- automate quality and adapter trimming for DNA 
sequencing
Package: wnpp
Owner: Steffen Moeller 
Severity: wishlist

* Package name: trim-galore
  Version : 0.6.4
  Upstream Author : Felix Krueger
* URL : 
https://www.bioinformatics.babraham.ac.uk/projects/trim_galore/
* License : GPL-3.0+
  Programming Lang: (C, C++, C#, Perl, Python, etc.)
  Description : automate quality and adapter trimming for DNA sequencing
 Trim Galore! is a wrapper script to automate quality and adapter trimming
 as well as quality control, with some added functionality to remove
 biased methylation positions for RRBS sequence files (for directional,
 non-directional (or paired-end) sequencing). It's main features are:
  * For adapter trimming, Trim Galore! uses the first 13 bp of Illumina
standard adapters ('AGATCGGAAGAGC') by default (suitable for both ends
of paired-end libraries), but accepts other adapter sequence, too
  * For MspI-digested RRBS libraries, Trim Galore! performs quality and
adapter trimming in two subsequent steps. This allows it to remove
2 additional bases that contain a cytosine which was artificially
introduced in the end-repair step during the library preparation
  * For any kind of FastQ file other than MspI-digested RRBS, Trim
Galore! can perform single-pass adapter- and quality trimming
  * The Phred quality of basecalls and the stringency for adapter removal
can be specified individually
  * Trim Galore! can remove sequences if they become too short during
the trimming process. For paired-end files Trim Galore! removes entire
sequence pairs if one (or both) of the two reads became shorter than
the set length cutoff. Reads of a read-pair that are longer than a
given threshold but for which the partner read has become too short
can optionally be written out to single-end files. This ensures that
the information of a read pair is not lost entirely if only one read
is of good quality
  * Trim Galore! can trim paired-end files by 1 additional bp from the 3'
end of all reads to avoid problems with invalid alignments with Bowtie 1
  * Trim Galore! accepts and produces standard or gzip compressed FastQ files
  * FastQC can optionally be run on the resulting output files once
trimming has completed

Remark: This package is maintained by Steffen Moeller at
   https://salsa.debian.org/med-team/trim-galore

Bug#933990: ITP: bitwise -- Terminal based bit manipulator in ncurses

2019-08-05 Thread Ramon Fried 
Package: wnpp
Severity: wishlist
Owner: Ramon Fried 
X-Debbugs-CC: debian-de...@lists.debian.org

* Package name: bitwise
  Version : 0.33
  Upstream Author : Ramon Fried 
* URL : https://github.com/mellowcandle/bitwise
* License : GPL3
  Programming Lang: C
  Description : Interactive bitwise operation in ncurses

Bitwise is multi base interactive calculator supporting dynamic base
conversion and bit manipulation. It's a handy tool for low level
hackers, kernel developers and device drivers developers.

Some of the features include:
Interactive ncurses interface
Command line calculator.
Individual bit manipulator.
Bitwise operations such as NOT, OR, AND, XOR, and shifts.

Bug#912303: ITA: libopenhmd -- API and drivers for immersive

2019-08-05 Thread Emmanuel Arias 
Hi I am working on the new usptream version. You can see on salsa.

I CC to Bálint to help to upload the package.

Bálint do you prefer that send the package to mentors? or you can take from
salsa?

Regards

-- 
Arias Emmanuel
http://eamanu.com
Github/Gitlab; @eamanu
Debian: @eamanu-guest

Bug#912303: ITA: libopenhmd -- API and drivers for immersive

2019-08-05 Thread Bálint Réczey 
Hi Emmanuel,

Emmanuel Arias  ezt írta (időpont: 2019.
aug. 5., H, 21:43):
>
> Hi I am working on the new usptream version. You can see on salsa.
>
> I CC to Bálint to help to upload the package.
>
> Bálint do you prefer that send the package to mentors? or you can take from 
> salsa?

I was happy to see that you already adopted the package, it just looks
like the changelog entry was not formatted correctly to close this
bug.
It is also an established practice to work with the same mentor who
sponsor all the uploads and help improving by giving feedback on the
packaging changes.
I see Adam sponsored the previous upload thus he would be a more
natural choice and I'm wondering if he would like to keep sponsoring
uploads.

Cheers,
Balint

PS: If Adam passes I can't safely promise ongoing sponsoring, but I
can help out with occasional uploads.

>
> Regards
>
> --
> Arias Emmanuel
> http://eamanu.com
> Github/Gitlab; @eamanu
> Debian: @eamanu-guest

Processed: Re: Bug#933995: ITP: Mmg

2019-08-05 Thread Debian Bug Tracking System 
Processing control commands:

> reassign -1 wnpp
Bug #933995 [mmg] ITP: Mmg
Warning: Unknown package 'mmg'
Bug reassigned from package 'mmg' to 'wnpp'.
No longer marked as found in versions 5.4.1-201908051833-1eoan1.
Ignoring request to alter fixed versions of bug #933995 to the same values 
previously set

-- 
933995: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=933995
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems

Bug#912303: ITA: libopenhmd -- API and drivers for immersive

2019-08-05 Thread Emmanuel Arias 
2019-08-05 17:03 GMT-03:00, Bálint Réczey :
> Hi Emmanuel,
>
> Emmanuel Arias  ezt írta (időpont: 2019.
> aug. 5., H, 21:43):
>>
>> Hi I am working on the new usptream version. You can see on salsa.
>>
>> I CC to Bálint to help to upload the package.
>>
>> Bálint do you prefer that send the package to mentors? or you can take
>> from salsa?
>
> I was happy to see that you already adopted the package, it just looks
> like the changelog entry was not formatted correctly to close this
> bug.

Yes, that was going to be my next question

> It is also an established practice to work with the same mentor who
> sponsor all the uploads and help improving by giving feedback on the
> packaging changes.
> I see Adam sponsored the previous upload thus he would be a more
> natural choice and I'm wondering if he would like to keep sponsoring
> uploads.
>
> Cheers,
> Balint
>
> PS: If Adam passes I can't safely promise ongoing sponsoring, but I
> can help out with occasional uploads.
>
>>
>> Regards
>>
>> --
>> Arias Emmanuel
>> http://eamanu.com
>> Github/Gitlab; @eamanu
>> Debian: @eamanu-guest
>

Cheers,
Emmanuel

Bug#934003: RFP: rget -- download URLs and verify the contents against a publicly recorded cryptographic log

2019-08-05 Thread Francois Marier 
Package: wnpp
Severity: wishlist

* Package name: rget
  Version : 0.0.7
  Upstream Author : Brandon Philips 
* URL : https://github.com/merklecounty/rget
* License : Apache-2
  Programming Lang: Go
  Description : download URLs and verify the contents against a publicly 
recorded cryptographic log

rget downloads URLs and verifies the contents against a publicly recorded
cryptographic log. The public log gives users of rget a number of useful
properties:

- Verifiability of a downloaded URL's contents being identical to what the
  rest of the world sees

- Searchability of recorded content changes of a URL

- Notifications to any interested party about changes to the URLs contents

In practice the way the system works is a URL owner will publish the
cryptographic digests at a URL adjacent to the content a rget user is
downloading. The rget tool will download the digest and verify this digest
appears in the Certificate Transparency log via a specially crafted DNS
name.

More information at 
https://merklecounty.substack.com/p/rget-a-secure-download-user-story

Bug#934004: ITP: golang-starlark -- Interpreter for the Starlark configuration language

2019-08-05 Thread Emanuel Krivoy 
Package: wnpp
Severity: wishlist
Owner: Emanuel Krivoy 

* Package name: golang-starlark
  Version : 0.0~git20190717.fc7a7f4-1
  Upstream Author : The Bazel Authors
* URL : https://github.com/google/starlark-go
* License : BSD-3-clause
  Programming Lang: Go
  Description : Interpreter for the Starlark configuration language

Starlark is a dialect of Python intended for use as a configuration language.
Like Python, it is an untyped dynamic language with high-level data types,
first-class functions with lexical scope, and garbage collection. Unlike
CPython, independent Starlark threads execute in parallel, so Starlark
workloads scale well on parallel machines. Starlark is a small and simple
language with a familiar and highly readable syntax. You can use it as an
expressive notation for structured data, defining functions to eliminate
repetition, or you can use it to add scripting capabilities to an existing
application.

A Starlark interpreter is typically embedded within a larger application, and
the application may define additional domain-specific functions and data types
beyond those provided by the core language

This library is a dependency of delve (github.com/go-delve/delve, ITP in
#932835). If possible I'd like this package to be co-mantained/sponsored by the
Go Team.

Bug#877915: marked as done (ITA: openvpn-auth-ldap -- OpenVPN LDAP authentication module)

2019-08-05 Thread Debian Bug Tracking System 
Your message dated Tue, 06 Aug 2019 00:18:00 +
with message-id 
and subject line Bug#877915: fixed in openvpn-auth-ldap 2.0.4-1
has caused the Debian Bug report #877915,
regarding ITA: openvpn-auth-ldap -- OpenVPN LDAP authentication module
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
877915: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=877915
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: wnpp
Severity: normal

I request an adopter for the openvpn-auth-ldap package.

The package description is:
 A plugin that implements username/password authentication via
 LDAP for OpenVPN 2.x. It features:
 .
  * Simple Apache-style configuration file.
  * LDAP group-based access restrictions.
  * Will authenticate against any LDAP server that supports LDAP
simple binds -- including Active Directory.
--- End Message ---
--- Begin Message ---
Source: openvpn-auth-ldap
Source-Version: 2.0.4-1

We believe that the bug you reported is fixed in the latest version of
openvpn-auth-ldap, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 877...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Aniol Marti  (supplier of updated openvpn-auth-ldap package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


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Format: 1.8
Date: Mon, 05 Aug 2019 13:10:09 +0200
Source: openvpn-auth-ldap
Architecture: source
Version: 2.0.4-1
Distribution: unstable
Urgency: medium
Maintainer: Aniol Marti 
Changed-By: Aniol Marti 
Closes: 680166 746483 861107 877915
Changes:
 openvpn-auth-ldap (2.0.4-1) unstable; urgency=medium
 .
   * New maintainer (Closes: #877915).
   * Update Debian Standards.
   * Fix problems while searching for a new upstream version.
   * Update Debhelper compat version from 5 to 12.
   * Change home URL from code.google.com to github.com.
   * Replace extra priority to optional.
   * Clean d/rules file.
   * Closes: #746483, #680166, #861107.
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Bug#934012: O: wand -- Python interface for ImageMagick library

2019-08-05 Thread Changwoo Ryu 
Package: wnpp
Severity: normal

I orphan this package, wand.  I don't use it anymore.

I updated it recently (0.5.5-1) and it's in pretty good shape.

See https://salsa.debian.org/debian/wand if you are interested.

Bug#934015: O: asciidoc -- Highly configurable text format for writing documentation

2019-08-05 Thread Joseph Herlant 
Package: wnpp
Severity: normal

I intend to orphan the asciidoc package.

The package description is:
 AsciiDoc is a text document format for writing articles, books, manuals and
 UNIX man pages. AsciiDoc files can be translated to HTML (with or without
 stylesheets), DocBook (articles, books and refentry documents) and LinuxDoc
 using the asciidoc command. AsciiDoc can also be used to build and maintain
 websites.
 .
 You write an AsciiDoc document the same way you would write a
 normal text document, there are no markup tags or weird format notations.
 AsciiDoc files are designed to be viewed, edited and printed directly or
 translated to other presentation formats
 .
 This metapackage provides a fully functionnal asciidoc environment working
 with dblatex for historical purposes.
 AsciiDoc is a text document format for writing articles, books, manuals and
 UNIX man pages. AsciiDoc files can be translated to HTML (with or without
 stylesheets), DocBook (articles, books and refentry documents) and LinuxDoc
 using the asciidoc command. AsciiDoc can also be used to build and maintain
 websites.
 .
 You write an AsciiDoc document the same way you would write a
 normal text document, there are no markup tags or weird format notations.
 AsciiDoc files are designed to be viewed, edited and printed directly or
 translated to other presentation formats


Currently there's a work to move it to python3 but it's not been released yet:
https://github.com/asciidoc/asciidoc-py3

Bug#934017: O: gnome-shell-pomodoro -- GNOME Shell time-management app

2019-08-05 Thread Joseph Herlant 
Package: wnpp
Severity: normal

I intend to orphan the gnome-shell-pomodoro package.

The package description is:
 This GNOME Shell app helps you to manage time according to the
 pomodoro technique.
 .
 Features:
  * puts a countdown timer in the GNOME Shell top panel;
  * nags you with reminders about taking a break;
  * uses full screen notifications that can be easily dismissed;
  * hides other notifications until the start of the break;
  * sets your IM (Empathy) status to "busy".
 .
 The pomodoro technique is a time and focus management method which improves
 productivity and quality of work. The name comes from a kitchen timer, which
 can be used to keep track of time. In short, you are supposed to focus on work
 for around 25 minutes and then have a well deserved break in which you should

Bug#934018: O: libmrss -- C library for parsing, writing and creating RSS files or streams

2019-08-05 Thread Joseph Herlant 
Package: wnpp
Severity: normal

 libmrss is a C library for parsing, writing and creating RSS
 (0.91, 0.92, 1.0, 2.0) files or streams.
 .
 This package contains the shared libraries.

It is not really maintained upstream anymore but should be relatively clean.

Bug#934020: O: libnxml -- C library for parsing, writing and creating xml 1.0/1.1 files or streams

2019-08-05 Thread Joseph Herlant 
Package: wnpp
Severity: normal

I intend to orphan the libnxml package.

The package description is:
 libnxml is a C library for parsing, writing, and creating XML 1.0 and
 1.1 files or streams. It supports UTF-8, UTF-16be and UTF-16le, UCS-4
 (1234, 4321, 2143, 2312).

Bug#934019: O: cmph -- C Minimal Perfect Hashing Library development files

2019-08-05 Thread Joseph Herlant 
Package: wnpp
Severity: normal

I intend to orphan the cmph package.

The package description is:
 Minimal perfect hash functions are widely used for memory efficient storage
 and fast retrieval of items from static sets, such as words in natural
 languages, reserved words in programming languages or interactive systems,
 universal resource locations (URLs) in Web search engines, or item sets in
 data mining techniques.