Processing of hdf5_1.6.5-4_i386.changes

[Archive Administrator]

hdf5_1.6.5-4_i386.changes uploaded successfully to localhost
along with the files:
  hdf5_1.6.5-4.dsc
  hdf5_1.6.5-4.diff.gz
  libhdf5-doc_1.6.5-4_all.deb
  libhdf5-serial-1.6.5-0_1.6.5-4_i386.deb
  libhdf5-serial-dev_1.6.5-4_i386.deb
  libhdf5-lam-1.6.5-0_1.6.5-4_i386.deb
  libhdf5-lam-dev_1.6.5-4_i386.deb
  libhdf5-mpich-1.6.5-0_1.6.5-4_i386.deb
  libhdf5-mpich-dev_1.6.5-4_i386.deb
  hdf5-tools_1.6.5-4_i386.deb

Greetings,

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hdf5_1.6.5-4_i386.changes ACCEPTED

[Debian Installer]

Accepted:
hdf5-tools_1.6.5-4_i386.deb
  to pool/main/h/hdf5/hdf5-tools_1.6.5-4_i386.deb
hdf5_1.6.5-4.diff.gz
  to pool/main/h/hdf5/hdf5_1.6.5-4.diff.gz
hdf5_1.6.5-4.dsc
  to pool/main/h/hdf5/hdf5_1.6.5-4.dsc
libhdf5-doc_1.6.5-4_all.deb
  to pool/main/h/hdf5/libhdf5-doc_1.6.5-4_all.deb
libhdf5-lam-1.6.5-0_1.6.5-4_i386.deb
  to pool/main/h/hdf5/libhdf5-lam-1.6.5-0_1.6.5-4_i386.deb
libhdf5-lam-dev_1.6.5-4_i386.deb
  to pool/main/h/hdf5/libhdf5-lam-dev_1.6.5-4_i386.deb
libhdf5-mpich-1.6.5-0_1.6.5-4_i386.deb
  to pool/main/h/hdf5/libhdf5-mpich-1.6.5-0_1.6.5-4_i386.deb
libhdf5-mpich-dev_1.6.5-4_i386.deb
  to pool/main/h/hdf5/libhdf5-mpich-dev_1.6.5-4_i386.deb
libhdf5-serial-1.6.5-0_1.6.5-4_i386.deb
  to pool/main/h/hdf5/libhdf5-serial-1.6.5-0_1.6.5-4_i386.deb
libhdf5-serial-dev_1.6.5-4_i386.deb
  to pool/main/h/hdf5/libhdf5-serial-dev_1.6.5-4_i386.deb


Override entries for your package:
hdf5-tools_1.6.5-4_i386.deb - optional science
hdf5_1.6.5-4.dsc - source libs
libhdf5-doc_1.6.5-4_all.deb - optional doc
libhdf5-lam-1.6.5-0_1.6.5-4_i386.deb - extra libs
libhdf5-lam-dev_1.6.5-4_i386.deb - extra libdevel
libhdf5-mpich-1.6.5-0_1.6.5-4_i386.deb - extra libs
libhdf5-mpich-dev_1.6.5-4_i386.deb - extra libdevel
libhdf5-serial-1.6.5-0_1.6.5-4_i386.deb - optional libs
libhdf5-serial-dev_1.6.5-4_i386.deb - optional libdevel

Announcing to [EMAIL PROTECTED]
Closing bugs: 393101 417234 


Thank you for your contribution to Debian.


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Bug#417234: marked as done (FTBFS with GCC 4.3: missing #includes)

[Debian Bug Tracking System]

Your message dated Mon, 14 May 2007 15:32:10 +
with message-id <[EMAIL PROTECTED]>
and subject line Bug#417234: fixed in hdf5 1.6.5-4
has caused the attached Bug report to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what I am
talking about this indicates a serious mail system misconfiguration
somewhere.  Please contact me immediately.)

Debian bug tracking system administrator
(administrator, Debian Bugs database)

--- Begin Message ---
Package: hdf5
Version: 1.6.5-3
Usertags: ftbfs-gcc-4.3
Tags: patch

Your package fails to build with GCC 4.3.  Version 4.3 has not been
released yet but I'm building with a snapshot in order to find errors
and give people an advance warning.  In GCC 4.3, the C++ header
dependencies have been cleaned up.  The advantage of this is that
programs will compile faster.  The downside is that you actually
need to directly #include everything you use (but you really should
do this anyway, otherwise your program won't work with any compiler
other than GCC).  Some background of this can be found at
http://gcc.gnu.org/PR28080

You can reproduce this problem with gcc-snapshot from unstable.

> Automatic build of hdf5_1.6.5-3 on coconut0 by sbuild/ia64 0.49
...
>  g++ -Wall -W -Wsign-compare -g -O3 -fomit-frame-pointer -I. -I../../src 
> -I../../../../c++/../src -D_BSD_SOURCE -D_POSIX_SOURCE -D_FILE_OFFSET_BITS=64 
> -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -c 
> ../../../../c++/src/H5PropList.cpp  -fPIC -DPIC -o .libs/H5PropList.o
> ../../../../c++/src/H5PropList.cpp: In member function 'std::string 
> H5::PropList::getClassName() const':
> ../../../../c++/src/H5PropList.cpp:423: error: 'free' was not declared in 
> this scope
> make[4]: *** [H5PropList.lo] Error 1
> make[4]: Leaving directory `/build/tbm/hdf5-1.6.5/debian/build-serial/c++/src'

--- c++/src/H5PropList.cpp~ 2007-04-01 21:01:44.0 +
+++ c++/src/H5PropList.cpp  2007-04-01 21:02:19.0 +
@@ -13,6 +13,7 @@
  * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
 
 #include 
+#include 
 #ifdef OLD_HEADER_FILENAME
 #include 
 #else

-- 
Martin Michlmayr
http://www.cyrius.com/

--- End Message ---
--- Begin Message ---
Source: hdf5
Source-Version: 1.6.5-4

We believe that the bug you reported is fixed in the latest version of
hdf5, which is due to be installed in the Debian FTP archive:

hdf5-tools_1.6.5-4_i386.deb
  to pool/main/h/hdf5/hdf5-tools_1.6.5-4_i386.deb
hdf5_1.6.5-4.diff.gz
  to pool/main/h/hdf5/hdf5_1.6.5-4.diff.gz
hdf5_1.6.5-4.dsc
  to pool/main/h/hdf5/hdf5_1.6.5-4.dsc
libhdf5-doc_1.6.5-4_all.deb
  to pool/main/h/hdf5/libhdf5-doc_1.6.5-4_all.deb
libhdf5-lam-1.6.5-0_1.6.5-4_i386.deb
  to pool/main/h/hdf5/libhdf5-lam-1.6.5-0_1.6.5-4_i386.deb
libhdf5-lam-dev_1.6.5-4_i386.deb
  to pool/main/h/hdf5/libhdf5-lam-dev_1.6.5-4_i386.deb
libhdf5-mpich-1.6.5-0_1.6.5-4_i386.deb
  to pool/main/h/hdf5/libhdf5-mpich-1.6.5-0_1.6.5-4_i386.deb
libhdf5-mpich-dev_1.6.5-4_i386.deb
  to pool/main/h/hdf5/libhdf5-mpich-dev_1.6.5-4_i386.deb
libhdf5-serial-1.6.5-0_1.6.5-4_i386.deb
  to pool/main/h/hdf5/libhdf5-serial-1.6.5-0_1.6.5-4_i386.deb
libhdf5-serial-dev_1.6.5-4_i386.deb
  to pool/main/h/hdf5/libhdf5-serial-dev_1.6.5-4_i386.deb



A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to [EMAIL PROTECTED],
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Francesco Paolo Lovergine <[EMAIL PROTECTED]> (supplier of updated hdf5 package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [EMAIL PROTECTED])


-BEGIN PGP SIGNED MESSAGE-
Hash: SHA1

Format: 1.7
Date: Mon, 14 May 2007 15:42:13 +0200
Source: hdf5
Binary: libhdf5-lam-dev hdf5-tools libhdf5-mpich-dev libhdf5-mpich-1.6.5-0 
libhdf5-serial-dev libhdf5-doc libhdf5-lam-1.6.5-0 libhdf5-serial-1.6.5-0
Architecture: source all i386
Version: 1.6.5-4
Distribution: unstable
Urgency: low
Maintainer: Debian QA Group <[EMAIL PROTECTED]>
Changed-By: Francesco Paolo Lovergine <[EMAIL PROTECTED]>
Description: 
 hdf5-tools - Hierarchical Data Format 5 (HDF5) - Runtime tools
 libhdf5-doc - Hierarchical Data Format 5 (HDF5) - Documentation
 libhdf5-lam-1.6.5-0 - Hierarchical Data Format 5 (HDF5) - runtime files - LAM 
version
 libhdf5-lam-dev - Hierarchical Data Format 5 (HDF5) - development files - LAM 
versi
 libhdf5-mpich-1.6.5-0 - Hierarchical Data Format 5 (HDF5) - runtime files - 
MPICH version
 libhdf5-mpich-dev - Hierarchical Data Format 5 (HDF5) - development files - 
MPICH ver
 libhdf5-serial-1.6.5-0 - Hie

Bug#226530: marked as done (tex-guy: implicitly declared function returns a pointer that is used)

[Debian Bug Tracking System]

Your message dated Mon, 14 May 2007 09:39:42 -0600
with message-id <[EMAIL PROTECTED]>
and subject line Please test your reported bug of tex-guy with the new version
has caused the attached Bug report to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what I am
talking about this indicates a serious mail system misconfiguration
somewhere.  Please contact me immediately.)

Debian bug tracking system administrator
(administrator, Debian Bugs database)

--- Begin Message ---
Package: tex-guy
Version: 1.2.4-3
Severity: important

The following functions are used in your pacakge without being defined
(you probably forgot a header file) in your package, and the return
value is converted to a pointer.  This is guaranteed to be fatal on
ia64, and probably any 64-bit architecture.

Function `fdopen' implicitly converted to pointer at spc_ps.c:868
Function `fdopen' implicitly converted to pointer at dvi2escpage.c:145
Function `fdopen' implicitly converted to pointer at dvi2misc.c:448
Function `popen' implicitly converted to pointer at gui-lpr.c:623

If appropriate, please upgrade this bug to serious.

thanks,
lamont

--- End Message ---
--- Begin Message ---
Version: 1.3.2-1

On Sat, May 12, 2007 at 02:07:36PM +0300, Lior Kaplan wrote:
> -BEGIN PGP SIGNED MESSAGE-
> Hash: SHA1
> 
> Hello All,
> 
> I'm contacting you as you have open bugs against tex-guy package.
> 
> I've uploaded a new version of tex-guy to debian unstable (version 1.3.2).
> 
> As upstream nor I were not sure if that new version fixes your bugs,
> please test them at let me know about the result.

This bug no longer exists in 1.3.2-1, thanks.
--- End Message ---

Bug#318711: marked as done ([Fwd: Log for successful build of tex-guy_1.2.4-4.1 (dist=unstable)])

[Debian Bug Tracking System]

Your message dated Mon, 14 May 2007 09:39:42 -0600
with message-id <[EMAIL PROTECTED]>
and subject line Please test your reported bug of tex-guy with the new version
has caused the attached Bug report to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what I am
talking about this indicates a serious mail system misconfiguration
somewhere.  Please contact me immediately.)

Debian bug tracking system administrator
(administrator, Debian Bugs database)

--- Begin Message ---
Package: tex-guy
Version: 1.2.4-4.1

Our automated buildd log filter[1] detected a problem that will cause
your package to segfault on architectures where the size of a pointer is
greater than the size of an integer, such as ia64.

tex-guy builds with -ansi, but uses the fdopen() and popen() functions.
Normally I provide a patch that drops the -ansi argument, but in this
case that won't work because some of the code won't compile without
-ansi[2].

So, the correct answer might be to recode to remove the fdopen() calls
in DVIlib2 and drop the -ansi CFLAG for gui-lpr.c (or recode that as
well, to remove the popen() call).

On the otherhand, it maybe easier to just drop -ansi & fix
dvi_set_filestamp() to build w/o -ansi.

[1]http://people.debian.org/~dannf/check-implicit-pointer-functions
[2]
=== DVIlib2
make[2]: Entering directory `/space/debian/tex-guy-1.2.4/DVIlib2-2.7.1'
../libtool --mode=compile \
  /usr/bin/gcc-3.3 -I.-DDVILIBDIR=\"/usr/share/DVIlib2/\" `VFlib3-config 
--cflags` \
-DVERSION=\"2.8.0\" -c dvi.c
mkdir .libs
 /usr/bin/gcc-3.3 -I. -DDVILIBDIR=\"/usr/share/DVIlib2/\" -I/usr/include 
-DVERSION=\"2.8.0\" -c dvi.c  -fPIC -DPIC -o .libs/dvi.o
dvi.c: In function `dvi_set_filestamp':
dvi.c:433: error: structure has no member named `st_mtimensec'
dvi.c: In function `DVI_file_modified':
dvi.c:470: error: structure has no member named `st_mtimensec'
make[2]: *** [dvi.lo] Error 1
make[2]: Leaving directory `/space/debian/tex-guy-1.2.4/DVIlib2-2.7.1'

-- 
dann frazier <[EMAIL PROTECTED]>
--- Begin Message ---
Function `fdopen' implicitly converted to pointer at spc_ps.c:868
Function `fdopen' implicitly converted to pointer at dvi2escpage.c:145
Function `fdopen' implicitly converted to pointer at dvi2misc.c:448
Function `popen' implicitly converted to pointer at gui-lpr.c:623
--- End Message ---
--- End Message ---
--- Begin Message ---
Version: 1.3.2-1

On Sat, May 12, 2007 at 02:07:36PM +0300, Lior Kaplan wrote:
> -BEGIN PGP SIGNED MESSAGE-
> Hash: SHA1
> 
> Hello All,
> 
> I'm contacting you as you have open bugs against tex-guy package.
> 
> I've uploaded a new version of tex-guy to debian unstable (version 1.3.2).
> 
> As upstream nor I were not sure if that new version fixes your bugs,
> please test them at let me know about the result.

This bug no longer exists in 1.3.2-1, thanks.
--- End Message ---

Bug#318711: Please test your reported bug of tex-guy with the new version

[dann frazier]

Version: 1.3.2-1

On Sat, May 12, 2007 at 02:07:36PM +0300, Lior Kaplan wrote:
> -BEGIN PGP SIGNED MESSAGE-
> Hash: SHA1
> 
> Hello All,
> 
> I'm contacting you as you have open bugs against tex-guy package.
> 
> I've uploaded a new version of tex-guy to debian unstable (version 1.3.2).
> 
> As upstream nor I were not sure if that new version fixes your bugs,
> please test them at let me know about the result.

This bug no longer exists in 1.3.2-1, thanks.


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kiss REMOVED from testing

[Debian testing watch]

FYI: The status of the kiss source package
in Debian's testing distribution has changed.

  Previous version: 0.21-13
  Current version:  (not in testing)
  Hint: 
# 20070513
Bug #407426: RM: kiss -- RoM

The script that generates this mail tries to extract removal
reasons from comments in the britney hint files. Those comments
were not originally meant to be machine readable, so if the
reason for removing your package seems to be nonsense, it is
probably the reporting script that got confused. Please check the
actual hints file before you complain about meaningless removals.

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Processed: tagging bugs that are closed by packages in NEW as pending

[Debian Bug Tracking System]

Processing commands for [EMAIL PROTECTED]:

> # the following bugs are closed by packages in NEW
> #
> tags 209570 pending
Bug#209570: The package description does not follow Debian policy
There were no tags set.
Tags added: pending

> tags 387775 pending
Bug#387775: ITA: libhdf4 -- The Hierarchical Data Format library
There were no tags set.
Tags added: pending

> tags 398439 pending
Bug#398439: Redundancy of console-data and console-setup
There were no tags set.
Tags added: pending

> tags 410553 pending
Bug#410553: Example of a config file is poor
There were no tags set.
Tags added: pending

> tags 421390 pending
Bug#421390: kbd: init script calls unicode_start without specifying the font
There were no tags set.
Tags added: pending

> tags 421578 pending
Bug#421578: ITP: gfa -- GTK+ fast address book
There were no tags set.
Tags added: pending

> tags 421794 pending
Bug#421794: ITP: hgsvn -- Scripts to work locally on Subversion checkouts using 
Mercurial
There were no tags set.
Tags added: pending

> thanks
Stopping processing here.

Please contact me if you need assistance.

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Bug#422605: [Patch] #422605 caused by gcjh being replaced by gjavah in gcj >= 4.2

[Luis Rodrigo Gallardo Cruz]

tag 422605 patch
thanks

The folowwing patch takes care of the rename and tightens
build-depends to make sure the replacement is caught.

BTW, since this builds entirely with free tools, it might be possible
to build it in all arches, instead of only i386 and amd64 (it seems to
be blocked by the autobuilders, as the package is arch: any).

-[Patch]---
diff -r 75343eaaea8c debian/changelog
--- a/debian/changelog  Mon May 14 23:58:18 2007 -0500
+++ b/debian/changelog  Tue May 15 01:16:20 2007 -0500
@@ -1,3 +1,12 @@ nbio (2.0-14) unstable; urgency=low
+nbio (2.0-15) unstable; urgency=low
+
+  * QA upload.
+  * Change call of gcjh to gjavah in make-libnbio.sh.
+Update Build-depends to gcj (>= 4:4.1.2-2) and added java-gcj-compat
+(Closes #422605).
+
+ -- Luis Rodrigo Gallardo Cruz <[EMAIL PROTECTED]>  Tue, 15 May 2007 00:47:53 
-0500
+
 nbio (2.0-14) unstable; urgency=low
 
   * QA upload.
diff -r 75343eaaea8c debian/control
--- a/debian/controlMon May 14 23:58:18 2007 -0500
+++ b/debian/controlTue May 15 01:07:13 2007 -0500
@@ -2,7 +2,7 @@ Section: libs
 Section: libs
 Priority: optional
 Maintainer: Debian QA Group <[EMAIL PROTECTED]>
-Build-Depends: debhelper (>> 4.1.0), fastjar (>= 1:3.2.1-0pre6), gcj (>= 
3:3.2.1-0pre6), doxygen
+Build-Depends: debhelper (>> 4.1.0), fastjar (>= 1:3.2.1-0pre6), gcj (>= 
3:3.2.1-0pre6), java-gcj-compat, doxygen
 Standards-Version: 3.7.2
 
 Package: libnbio2-java
diff -r 75343eaaea8c debian/make-libnbio.sh
--- a/debian/make-libnbio.shMon May 14 23:58:18 2007 -0500
+++ b/debian/make-libnbio.shTue May 15 01:02:00 2007 -0500
@@ -41,7 +41,7 @@ PACKAGE="seda.nbio"
 # the versioned gcc-x.y and gcj-x.y programs are no longer used.
 JAVA="/usr/bin/gcj-wrapper"
 JAVAC="/usr/bin/gcj -C"
-JAVAH="/usr/bin/gcjh"
+JAVAH="/usr/bin/gjavah"
 JAR="/usr/bin/fastjar"
 DOXYGEN="/usr/bin/doxygen"
 
@@ -75,7 +75,7 @@ for classfile in *.class; do
header="jni/${class}.h"
echo "${PACKAGE}.${class}..."
cd ${BASE_DIR}/${BUILD_DIR}
-   ${JAVAH} -jni -o ${PACKAGE_DIR}/${header} "${PACKAGE}.${class}"
+   ${JAVAH} -jni -I . -o ${PACKAGE_DIR}/${header} "${PACKAGE}.${class}"
if [ $? -ne 0 ]; then
   echo "Error: unable to build all header files.  Terminating."
   exit 1
-[/Patch]--



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Processed: [Patch] #422605 caused by gcjh being replaced by gjavah in gcj >= 4.2

[Debian Bug Tracking System]

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> tag 422605 patch
Bug#422605: FTBFS: debian/make-libnbio.sh: line 78: /usr/bin/gcjh: No such file 
or directory
There were no tags set.
Tags added: patch

> thanks
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