RFS: libsmithwaterman
Hi, I've added autopkgtests to libsmithwaterman. Please review and sponsor. https://salsa.debian.org/med-team/libsmithwaterman Regards, Pranav ᐧ
sonLib - anyone working with it, addressed packaging?!?
Hello, https://github.com/ComparativeGenomicsToolkit/sonLib should be the same as / cleaned-up version of https://github.com/benedictpaten/sonLib which I need to address the packaging of https://github.com/benedictpaten/marginPhase which again is needed for some recent fancy Nanopore assembler. On https://github.com/benedictpaten/sonLib/graphs/contributors I saw mr-c listed as a contributor. @Michael, can you direct me a bit? Anyone else? https://github.com/benedictpaten/marginPhase/blob/master/.gitmodules points to the one of his own repository. Will address dependency https://github.com/khowe/quicktree in the meantime. Cheers, Steffen
Re: Statistics::PCA and friends
On Thu, 21 May 2020 19:12:23 +0200, Étienne Mollier wrote: > > I'd love to switch to dpt but its always so hard to switch from > > "something that works" to "something that might work a bit differen but > > its state of the art". I would welcome if someone would check our > > scripts and turn them into wrappers around some dpt calls in case > > there might be some additional functionality (sorry I never managed > > to check dpt despite I probably should). > dpt standing for Debian Perl packaging Tools, I would suppose a > few built-in capabilities may be Debian Perl Team specific, but > yes, a more generic automata could be interesting I guess. Indeed, there are some pkg-perl specifics in our tools, but yes, some are probably useful for others, and in Debian we have a long tradition of duplicating work :/ > Speaking of automation, I tried to run routine-update out of > curiosity, and it dropped the debhelper-compat from level 13 to > level 12. I was wondering if there would be concerns over > moving too fast to newer debhelper-compat version, or if the > latest and greatest is always the one recommended. In doubt I > undid the the routine-update changes, for now. From a perl point of view: We have often been a bit slow and careful not to switch to a new debhelper compat level too early, especially when there are no gains for our type of packages. With debhelper 13 there are some nice improvements, so it makes sense to use it IMO. Cheers, gregor -- .''`. https://info.comodo.priv.at -- Debian Developer https://www.debian.org : :' : OpenPGP fingerprint D1E1 316E 93A7 60A8 104D 85FA BB3A 6801 8649 AA06 `. `' Member VIBE!AT & SPI Inc. -- Supporter Free Software Foundation Europe `- signature.asc Description: Digital Signature
Re: sonLib - anyone working with it, addressed packaging?!?
On Fri, May 22, 2020 at 5:30 PM Steffen Möller wrote: > Hello, > > https://github.com/ComparativeGenomicsToolkit/sonLib should be the same > as / cleaned-up version of > https://github.com/benedictpaten/sonLib The later is currently a code copy in https://tracker.debian.org/pkg/vg It is also not quite the same as https://github.com/ComparativeGenomicsToolkit/sonLib > which I need to address the packaging of > > https://github.com/benedictpaten/marginPhase > > which again is needed for some recent fancy Nanopore assembler. > > On https://github.com/benedictpaten/sonLib/graphs/contributors I saw > mr-c listed as a contributor. @Michael, can you direct me a bit? Anyone > My only contribution was a Makefile clean up; I'm ignorant otherwise :-P > Cheers, > > Steffen > > -- Michael R. Crusoe
Re: RFS: libsmithwaterman
Hi Pranav, On Fri, May 22, 2020 at 08:09:42PM +0530, Pranav Ballaney wrote: > I've added autopkgtests to libsmithwaterman. > Please review and sponsor. > > https://salsa.debian.org/med-team/libsmithwaterman Uploaded. Thanks a lot for your work on this, Andreas. -- http://fam-tille.de
https://salsa.debian.org/med-team/community/2020-covid19-hackathon/-/wikis/2nd-Covid-19-Hackathon
Hello, We had a nice and friendly Debian Med Covid-19 fireside this, well, "evening" my time. Quite some of us felt prepared to invest their time into a revisited Covid-19 Sprint. On https://salsa.debian.org/med-team/community/2020-covid19-hackathon/-/wikis/2nd-Covid-19-Hackathon I put my recollection what we had discussed/thought about. Please give it a spin. Best, Steffen
