Please allow smalr to migrate to testing
Hello, We have one more case of an arch:all package held up in testing because of installability issues on i386 due to a dependency on bwa. Can smalr be allowed to migrate to Testing? https://qa.debian.org/excuses.php?package=smalr Thanks and regards Afif -- Afif Elghraoui | عفيف الغراوي http://afif.ghraoui.name
Re: Qlustar 10 available - Now 100% Open Source
Hi Tony, On Sat, Apr 21, 2018 at 04:57:41PM +0200, Tony Travis wrote: > Q-Leap previously offered to support Debian-Med and they attended at > least one Debian-Med Sprint. However, their product licensing policy was > restrictive and I decided not to use it. However, that has now changed: > > > https://qlustar.com/news/qlustar-10-available-now-100-open-source The Download page[1] says: Before downloading any parts of Qlustar, please read the Qlustar License Agreement. If you are representing a company planning to sell clusters or services based on Qlustar, please particularly note the paragraph titled COMMERCIAL RESTRICTIONS and get in touch with us. This sounds only fit for debian/non-free. It is no argument to not work on the packaging, thought. However, doing the packaging without any knowledge and systems to test is a bit hard. I'd like to see some kind of packaging model, where we teach upstream the packaging and they do the actual work. This has worked for other complex software where we have no internal competence in Debian Med (for instance fis-gtm). Tony, if you have some contact could you make such a proposal? Kind regards and thanks for the info Andreas. [1] https://qlustar.com/download -- http://fam-tille.de
Re: RFS: ChromImpute -- Large-scale systematic epigenome imputation
Hi Dylan, done, thanks for your preparation Andreas. On Sun, Apr 22, 2018 at 12:32:27AM +0200, Dylan Aïssi wrote: > Hi, > > Could someone upload it? Thanks. > > Best, > Dylan > > > Package name: chromimpute > URL: http://www.biolchem.ucla.edu/labs/ernst/ChromImpute/ > License: GPL-2 > Description: Large-scale systematic epigenome imputation > ChromImpute takes an existing compendium of epigenomic data and uses it to > predict signal tracks for mark-sample combinations not experimentally mapped > or to generate a potentially more robust version of data sets that have been > mapped experimentally. ChromImpute bases its predictions on features from > signal tracks of other marks that have been mapped in the target sample and > the target mark in other samples with these features combined using an > ensemble of regression trees. > > This package will be maintained by the Debian Med Packaging Team at: > https://salsa.debian.org/med-team/chromimpute.git/ > > -- http://fam-tille.de
Re: uploading libzstd...
Hi Mattia, thanks a lot for sorting out things. On Sat, Apr 21, 2018 at 11:13:42AM +0200, Mattia Rizzolo wrote: > I'm also deleting the following tags from the git repositories: > * debian/1.3.3+dfsg-2 > * debian/1.3.4+dfsg-1 > * debian/1.3.4+dfsg-2 > > Alexandre Mestiashvili, Dimitri John Ledkov, Andreas Tille: please > remove them from your local checkout. Just fetched a new clone. As a general note: This package is in Debian Med team maintenance since it was initially needed as a dependency for some Debian Med package. Usually this is the way we go in the Debian Med team and we try to do our best to care for those general, not medicine/biology related packages. However, in this case the package seems to gain some general relevance (even needed in installer) that I would have a better feeling if it would be maintained in a different team that has some closer connection to release team and is more tied to basic infrastructure. Kind regards Andreas. -- http://fam-tille.de
