BioConductor Edger now seems to really need locfit

[Andreas Tille]

Hi,

since BioConductor has a new version I took the chance of the newly
available tool dh-r (using dh instead of cdbs) to upload all new
BioConductor packages (and when doing so switch drom cdbs to dh-r).
This went quite smoothly.

The only exception is r-bioc-edger.  It seems it now really needs
r-cran-locfit which is non-free (see #731599).  All previous attempts to
contact the original author of the locfit code failed.  It would be
really great to free locfit since this would also free cufflinks and
some other R packages would profit as well.

So if anybody could try to search for the author (Twitter & co. helped
a bit in previous cases) we might be able to do something.

Kind regards

   Andreas.

-- 
http://fam-tille.de

Orthanc for digital pathology

[Sebastien Jodogne]

Dear all,

Last Saturday, the Orthanc project released initial support of DICOM for 
whole-slide microscopic imaging (digital pathology) [1]. This 
implementation tries and follows Supplement 145 [2].


The implementation notably provides a command-line tool to convert 
whole-slide images to DICOM, possibly using OpenSlide to decode 
proprietary file formats. It also provides a Web viewer of such possibly 
multi-gigapixel DICOM images, taking advantage of OpenLayers.


I have just packaged this framework for Debian Sid. The package is 
already uploaded to the Subversion repository of Debian Med [3]. I think 
it is reasonably lintian-proof.


Andreas, would it be possible for you to give a look at the package, and 
possibly upload it to the NEW queue if it looks OK to you? I thank you 
much in advance!


Cheers,
Sébastien-


PS: It would perhaps be a good idea to also migrate the package to git, 
as there are some DFSG modifications wrt. the upstream tarball.




[1] http://www.orthanc-server.com/static.php?page=blog#wsi
[2] ftp://medical.nema.org/medical/dicom/final/sup145_ft.pdf
[3] 
https://anonscm.debian.org/viewvc/debian-med/trunk/packages/orthanc-wsi/trunk/

Re: [MoM]-Emperor package issue

[Kerim Ölçer]

Hi Afif
finaly i uploaded
i changed ssh_config #GSSAPIAuthentication yes
 GSSAPIDelegateCredentials
no>#GSSAPIDelegateCredentials no> and fixed

want to look ?
regards


2016-10-28 7:08 GMT+03:00 Afif Elghraoui :

> Hello,
>
> على الأربعاء 26 تشرين الأول 2016 ‫12:38، كتب Andreas Tille:
> > Hi,
> >
> > On Wed, Oct 26, 2016 at 08:35:47PM +0300, Kerim Ölçer wrote:
> >> hi Afif
> >> ---
> >> git push origin master
> >> fatal: remote error: access denied or repository not exported:
> >> /debian-med/emperor.git
> >> ---
> >> I'm getting this type of error
> >> what should i do ?
> >
> > Hmm, we had recently some cases where the group membership was not
> > propagated to UNIX groups on git.debian.org.  Please login to this host
> > and check with `groups` whether you are a member of scm_debian-med.  If
> > not as far as I know you need to contact Alioth admins.  Some people
> > here on this list should have experience with this issue. :-(
> >
>
> I checked and the permissions on the repository are ok. Kerim, did you
> set up an ssh key for Alioth? That is the only way to connect to the
> server. Take a look at  if you
> haven't already.
>
> regards
> Afif
>
> --
> Afif Elghraoui | عفيف الغراوي
> http://afif.ghraoui.name
>
>