Re: Flexbar source code?
On 29/01/13 07:29, Andreas Tille wrote: Hi Johannes, thanks again for your very helpful clarification. After reading this I think it might be the best idea if we try to package flexbar as it is (including seqan copy) for the experimental branch in Debian which helps Toni for the moment and once there might be some new seqan library release we will build flexbar using this new release and move it to main Debian. I guess for the moment this helps those who need flexbar now and is technically OK. Toni, do you consider it reasonable if we do this together at the Debian Med Sprint in Kiel? Hi, Andreas. Yes, that would be great! Thanks for your help with this project. Bye, Tony. Johannes, thanks again for sharing your insight and also for providing flexbar as free software Andreas. On Mon, Jan 28, 2013 at 04:09:08PM +0100, Johannes Röhr wrote: Hi Andreas, it is completely clear to me that one should use as many packaged libraries as possible. I'm simply not sure if it works with the older SeqAn package apart from modifications. I would have to test this first, and for reasons of consistency I would then go back to this release also on sourceforge. Since I know that a lot changes were introduced in the recent year, especially in the align module and the argument parser, this could cause problems and I also prefer to rely on the recent implementations. Therefore, I propose to wait for the next SeqAn package release. I will then use it also for the Flexbar version on sourceforge and will try to come along without modifications. Since I applied only very slight modifications, I am optimistic that it works out and I will discuss it with SeqAn developers. I definitely prefer to use an official and unmodified release, and see it as an aim for coming versions. Besides from cleaner sources and packaging, it would then also become obsolete to adjust new SeqAn libs to modifications for inclusion in Flexbar. However, I am not sure how fast a new packaged release will be provided. Best regards Johannes -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org/510792c7.2060...@minke.ukfsn.org
strap, strap-base, lintian warnings solved
Hi all, I have fixed the copyright file and man pages. Made a README.Debian explaining the classpath issue and why the jar file is in /usr/shar/strap-base/ rather than in /usr/share/java/ Still get the lintian warning "newer-standards-version 3.9.4 " even though I updated with apt-get -t unstable install build-essential debhelper dh-make lintian Can I ignore this? Can I ignore this warning: P: strap: no-upstream-changelog I did not manage to reproduce the lintian warning "jar-not-in-usr-share" even not with options -I -i --pedantic Has it vanished? Why? Cheers Christoph -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org/f31736b6b6fd9f328560a99ba5ca0cb1.squir...@webmail.charite.de
FOSDEM 2013
Hi team, I saw that Andreas is giving 2 talks [0] at FOSDEM this Saturday, I'll be present, wondering if there would be other Debian Med members around to meet? See you in Brussels! +Emilien [0] https://fosdem.org/2013/schedule/speaker/andreas_tille/ -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org/CANqxmqH32U9hu=ocvfqyotq9azpr-+78ropef2rtlrubssm...@mail.gmail.com
Re: FOSDEM 2013
Hi Emilien, On Tue, Jan 29, 2013 at 10:33:00PM +0100, Emilien Klein wrote: > I saw that Andreas is giving 2 talks [0] at FOSDEM this Saturday, I should have announced these talks here however, they are not to much oriented to medicine or biology - rather how to form a team around certain topic and make this topic "hot" inside Debian. I'd be happy if anybody from the Debian Med team might visit the talk and join me afterwards to discuss potential enhancements of the talk. > I'll > be present, wondering if there would be other Debian Med members > around to meet? As far as I know FOSDEM will be crowded by Debian developers and some of them are past Debian Med members or could be potential Debian Med members. > See you in Brussels! >+Emilien :-) See you Andreas. > [0] https://fosdem.org/2013/schedule/speaker/andreas_tille/ -- http://fam-tille.de -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org/20130130073702.ga27...@an3as.eu
Re: FOSDEM 2013
Hi Emilien, I saw that Andreas is giving 2 talks [0] at FOSDEM this Saturday, I'll be present, wondering if there would be other Debian Med members around to meet? I will also give a talk about Orthanc [1] in the FOSS for Scientists devroom [2]. See you, Sébastien- [1] https://code.google.com/p/orthanc/ [2] https://fosdem.org/2013/schedule/event/orthanc/ -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org/5108cfc4.2090...@chu.ulg.ac.be
