Re: proposed patch libbam-dev due to cufflinks configure script not picking up bam.h
Hi Alex, On Fri, Dec 02, 2011 at 11:17:03PM +0100, Alex Mestiashvili wrote: > Hello , I've imported a new version to the git repository : > > http://anonscm.debian.org/gitweb/?p=debian-med/cufflinks.git > > the problem is that I can build source only one time , next time > dpkg-source realizes that some files in the source are modified by > previous build . > > As far as I understood it runs autoconf and automake in the middle of > compiling and that modifies the following files: configure , > Makefile.in config.h.in and src/Makefile.in . > > Does anybody know how to avoid this ? I gave it a quick(!) try (see git) but failed. I'd suggest asking on debian-ment...@lists.debian.org because there are people with a lot of experience (gaining it yourself will take you hours). Kind regards Andreas. -- http://fam-tille.de -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org/20111203174348.ga9...@an3as.eu
Re: proposed patch libbam-dev due to cufflinks configure script not picking up bam.h
On Sat, Dec 03, 2011 at 06:43:50PM +0100, Andreas Tille wrote: > > Does anybody know how to avoid this ? > > I gave it a quick(!) try (see git) but failed. I'd suggest asking on > debian-ment...@lists.debian.org because there are people with a lot of > experience (gaining it yourself will take you hours). After having some not so quick look I at least found the reaosn for the problem: In debian/patches/0001-bam2samtools.patch the configure script and the m4 files are tweaked to make sure it will find the bam.h header file. However when in dh_auto_clean the configure script is called again this patch is not active any more. Even if the root of the problem seems to be clear I'm not fully sure what might be the best solution for this problem. Any ideas? (Perhaps asking this really on debian-mentors?) Kind regards Andreas. -- http://fam-tille.de -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org/20111203233909.ga16...@an3as.eu
