[deal.II] Re_Error during installation of dealii.8.4.1
Hi , I am trying to install dealii in a Linux environment and when I run the command make install after the CMake step, once the make process has reached 100 % I get the following error message: *Scanning dependencies of target obj_meshworker.debug* *[100%] Building CXX object source/meshworker/CMakeFiles/obj_meshworker.debug.dir/mesh_worker.cc.o* *[100%] Building CXX object source/meshworker/CMakeFiles/obj_meshworker.debug.dir/mesh_worker_info.cc.o* *[100%] Building CXX object source/meshworker/CMakeFiles/obj_meshworker.debug.dir/mesh_worker_vector_selector.cc.o* *[100%] Built target obj_meshworker.debug* *Scanning dependencies of target deal_II.g* *[100%] Building CXX object source/CMakeFiles/deal_II.g.dir/dummy.cc.o* *Linking CXX shared library ../lib/libdeal_II.g.so* *icpc: command line warning #10006: ignoring unknown option '-fuse-ld=gold'* *": internal error: backend signals* *icpc: error #10014: problem during multi-file optimization compilation (code 4)* *make[2]: *** [lib/libdeal_II.g.so.8.4.2] Error 4* *make[1]: *** [source/CMakeFiles/deal_II.g.dir/all] Error 2* *make: *** [all] Error 2* I have tried with dealii.8.4.2 as well and still the same problem persists. Since I am trying to install them into my university's cluster account, I guess there might be some issues with the CMake version i.e. CMake/2.8.12.1-intel-2014a or CMake/2.8.12.1-GCC-4.8.2 versions, that are available by default. Any suggestions to fix this issue would be really appreciated. Thank you and Regards Sathish -- The deal.II project is located at http://www.dealii.org/ For mailing list/forum options, see https://groups.google.com/d/forum/dealii?hl=en --- You received this message because you are subscribed to the Google Groups "deal.II User Group" group. To unsubscribe from this group and stop receiving emails from it, send an email to dealii+unsubscr...@googlegroups.com. For more options, visit https://groups.google.com/d/optout.
[deal.II] Re: Re_Error during installation of dealii.8.4.1
Hi Bruno, Thanks for the quick reply. Currently I am using *icc/2013.5.192. *Also the available ones in the cluster are : *icc/11.1.080, icc/2013.5.192, icc/2013_sp1.1.106 *and* icc/2015.0.090*. Is any of the above supported? Regards Sathish On Thursday, 2 February 2017 20:00:18 UTC+1, Bruno Turcksin wrote: > > Sathish, > > which version of the intel compiler are you using? Older versions are not > tested. > > Best, > > Bruno > > On Thursday, February 2, 2017 at 1:55:07 PM UTC-5, Sathish Kumar wrote: >> >> Hi , >> >> I am trying to install dealii in a Linux environment and when I run the >> command make install after the CMake step, once the make process has >> reached 100 % I get the following error message: >> >> *Scanning dependencies of target obj_meshworker.debug* >> *[100%] Building CXX object >> source/meshworker/CMakeFiles/obj_meshworker.debug.dir/mesh_worker.cc.o* >> *[100%] Building CXX object >> source/meshworker/CMakeFiles/obj_meshworker.debug.dir/mesh_worker_info.cc.o* >> *[100%] Building CXX object >> source/meshworker/CMakeFiles/obj_meshworker.debug.dir/mesh_worker_vector_selector.cc.o* >> *[100%] Built target obj_meshworker.debug* >> *Scanning dependencies of target deal_II.g* >> *[100%] Building CXX object source/CMakeFiles/deal_II.g.dir/dummy.cc.o* >> *Linking CXX shared library ../lib/libdeal_II.g.so >> <http://libdeal_II.g.so>* >> *icpc: command line warning #10006: ignoring unknown option >> '-fuse-ld=gold'* >> *": internal error: backend signals* >> >> *icpc: error #10014: problem during multi-file optimization compilation >> (code 4)* >> *make[2]: *** [lib/libdeal_II.g.so.8.4.2] Error 4* >> *make[1]: *** [source/CMakeFiles/deal_II.g.dir/all] Error 2* >> *make: *** [all] Error 2* >> >> I have tried with dealii.8.4.2 as well and still the same problem >> persists. Since I am trying to install them into my university's cluster >> account, I guess there might be some issues with the CMake version >> i.e. CMake/2.8.12.1-intel-2014a or CMake/2.8.12.1-GCC-4.8.2 versions, that >> are available by default. >> >> Any suggestions to fix this issue would be really appreciated. >> >> Thank you and Regards >> Sathish >> >> -- The deal.II project is located at http://www.dealii.org/ For mailing list/forum options, see https://groups.google.com/d/forum/dealii?hl=en --- You received this message because you are subscribed to the Google Groups "deal.II User Group" group. To unsubscribe from this group and stop receiving emails from it, send an email to dealii+unsubscr...@googlegroups.com. For more options, visit https://groups.google.com/d/optout.
Re: [deal.II] Re: Re_Error during installation of dealii.8.4.1
Bruno, Okay. I shall try with icc 2015 then and get back to you if there are some issues. Thanks again. Sathish On Thursday, 2 February 2017 20:27:40 UTC+1, Bruno Turcksin wrote: > > Sathish, > > icc 2015 should work. We don't test deal with icc 2015 anymore but we > used to. I also think that deal 8.4 was tested with icc 2015. > > Best, > > Bruno > > 2017-02-02 14:18 GMT-05:00 Sathish Kumar >: > > > Hi Bruno, > > > > Thanks for the quick reply. > > > > Currently I am using icc/2013.5.192. Also the available ones in the > cluster > > are : > > > > icc/11.1.080, icc/2013.5.192, icc/2013_sp1.1.106 and icc/2015.0.090. > > > > Is any of the above supported? > > > > Regards > > Sathish > > > > > > > > On Thursday, 2 February 2017 20:00:18 UTC+1, Bruno Turcksin wrote: > >> > >> Sathish, > >> > >> which version of the intel compiler are you using? Older versions are > not > >> tested. > >> > >> Best, > >> > >> Bruno > >> > >> On Thursday, February 2, 2017 at 1:55:07 PM UTC-5, Sathish Kumar wrote: > >>> > >>> Hi , > >>> > >>> I am trying to install dealii in a Linux environment and when I run > the > >>> command make install after the CMake step, once the make process has > reached > >>> 100 % I get the following error message: > >>> > >>> Scanning dependencies of target obj_meshworker.debug > >>> [100%] Building CXX object > >>> source/meshworker/CMakeFiles/obj_meshworker.debug.dir/mesh_worker.cc.o > >>> [100%] Building CXX object > >>> > source/meshworker/CMakeFiles/obj_meshworker.debug.dir/mesh_worker_info.cc.o > >>> [100%] Building CXX object > >>> > source/meshworker/CMakeFiles/obj_meshworker.debug.dir/mesh_worker_vector_selector.cc.o > > > >>> [100%] Built target obj_meshworker.debug > >>> Scanning dependencies of target deal_II.g > >>> [100%] Building CXX object source/CMakeFiles/deal_II.g.dir/dummy.cc.o > >>> Linking CXX shared library ../lib/libdeal_II.g.so > >>> icpc: command line warning #10006: ignoring unknown option > >>> '-fuse-ld=gold' > >>> ": internal error: backend signals > >>> > >>> icpc: error #10014: problem during multi-file optimization compilation > >>> (code 4) > >>> make[2]: *** [lib/libdeal_II.g.so.8.4.2] Error 4 > >>> make[1]: *** [source/CMakeFiles/deal_II.g.dir/all] Error 2 > >>> make: *** [all] Error 2 > >>> > >>> I have tried with dealii.8.4.2 as well and still the same problem > >>> persists. Since I am trying to install them into my university's > cluster > >>> account, I guess there might be some issues with the CMake version > i.e. > >>> CMake/2.8.12.1-intel-2014a or CMake/2.8.12.1-GCC-4.8.2 versions, that > are > >>> available by default. > >>> > >>> Any suggestions to fix this issue would be really appreciated. > >>> > >>> Thank you and Regards > >>> Sathish > >>> > > -- > > The deal.II project is located at http://www.dealii.org/ > > For mailing list/forum options, see > > https://groups.google.com/d/forum/dealii?hl=en > > --- > > You received this message because you are subscribed to a topic in the > > Google Groups "deal.II User Group" group. > > To unsubscribe from this topic, visit > > https://groups.google.com/d/topic/dealii/SE6UClZRpbI/unsubscribe. > > To unsubscribe from this group and all its topics, send an email to > > dealii+un...@googlegroups.com . > > For more options, visit https://groups.google.com/d/optout. > -- The deal.II project is located at http://www.dealii.org/ For mailing list/forum options, see https://groups.google.com/d/forum/dealii?hl=en --- You received this message because you are subscribed to the Google Groups "deal.II User Group" group. To unsubscribe from this group and stop receiving emails from it, send an email to dealii+unsubscr...@googlegroups.com. For more options, visit https://groups.google.com/d/optout.
Re: [deal.II] Re: Re_Error during installation of dealii.8.4.1
Bruno, On using icc 2015 I am getting this error message : *Scanning dependencies of target deal_II.g* *[100%] Building CXX object source/CMakeFiles/deal_II.g.dir/dummy.cc.o* *Linking CXX shared library ../lib/libdeal_II.g.so* *icpc: command line warning #10006: ignoring unknown option '-fuse-ld=gold'* *lac/CMakeFiles/obj_lac.debug.dir/sparse_matrix_inst2.cc.o: file not recognized: File format not recognized* *make[2]: *** [lib/libdeal_II.g.so.8.4.1] Error 1* *make[1]: *** [source/CMakeFiles/deal_II.g.dir/all] Error 2* *make: *** [all] Error 2* Is there something else that needs to changed as well ? Kind regards Sathish On Thursday, 2 February 2017 20:27:40 UTC+1, Bruno Turcksin wrote: > > Sathish, > > icc 2015 should work. We don't test deal with icc 2015 anymore but we > used to. I also think that deal 8.4 was tested with icc 2015. > > Best, > > Bruno > > 2017-02-02 14:18 GMT-05:00 Sathish Kumar >: > > > Hi Bruno, > > > > Thanks for the quick reply. > > > > Currently I am using icc/2013.5.192. Also the available ones in the > cluster > > are : > > > > icc/11.1.080, icc/2013.5.192, icc/2013_sp1.1.106 and icc/2015.0.090. > > > > Is any of the above supported? > > > > Regards > > Sathish > > > > > > > > On Thursday, 2 February 2017 20:00:18 UTC+1, Bruno Turcksin wrote: > >> > >> Sathish, > >> > >> which version of the intel compiler are you using? Older versions are > not > >> tested. > >> > >> Best, > >> > >> Bruno > >> > >> On Thursday, February 2, 2017 at 1:55:07 PM UTC-5, Sathish Kumar wrote: > >>> > >>> Hi , > >>> > >>> I am trying to install dealii in a Linux environment and when I run > the > >>> command make install after the CMake step, once the make process has > reached > >>> 100 % I get the following error message: > >>> > >>> Scanning dependencies of target obj_meshworker.debug > >>> [100%] Building CXX object > >>> source/meshworker/CMakeFiles/obj_meshworker.debug.dir/mesh_worker.cc.o > >>> [100%] Building CXX object > >>> > source/meshworker/CMakeFiles/obj_meshworker.debug.dir/mesh_worker_info.cc.o > >>> [100%] Building CXX object > >>> > source/meshworker/CMakeFiles/obj_meshworker.debug.dir/mesh_worker_vector_selector.cc.o > > > >>> [100%] Built target obj_meshworker.debug > >>> Scanning dependencies of target deal_II.g > >>> [100%] Building CXX object source/CMakeFiles/deal_II.g.dir/dummy.cc.o > >>> Linking CXX shared library ../lib/libdeal_II.g.so > >>> icpc: command line warning #10006: ignoring unknown option > >>> '-fuse-ld=gold' > >>> ": internal error: backend signals > >>> > >>> icpc: error #10014: problem during multi-file optimization compilation > >>> (code 4) > >>> make[2]: *** [lib/libdeal_II.g.so.8.4.2] Error 4 > >>> make[1]: *** [source/CMakeFiles/deal_II.g.dir/all] Error 2 > >>> make: *** [all] Error 2 > >>> > >>> I have tried with dealii.8.4.2 as well and still the same problem > >>> persists. Since I am trying to install them into my university's > cluster > >>> account, I guess there might be some issues with the CMake version > i.e. > >>> CMake/2.8.12.1-intel-2014a or CMake/2.8.12.1-GCC-4.8.2 versions, that > are > >>> available by default. > >>> > >>> Any suggestions to fix this issue would be really appreciated. > >>> > >>> Thank you and Regards > >>> Sathish > >>> > > -- > > The deal.II project is located at http://www.dealii.org/ > > For mailing list/forum options, see > > https://groups.google.com/d/forum/dealii?hl=en > > --- > > You received this message because you are subscribed to a topic in the > > Google Groups "deal.II User Group" group. > > To unsubscribe from this topic, visit > > https://groups.google.com/d/topic/dealii/SE6UClZRpbI/unsubscribe. > > To unsubscribe from this group and all its topics, send an email to > > dealii+un...@googlegroups.com . > > For more options, visit https://groups.google.com/d/optout. > -- The deal.II project is located at http://www.dealii.org/ For mailing list/forum options, see https://groups.google.com/d/forum/dealii?hl=en --- You received this message because you are subscribed to the Google Groups "deal.II User Group" group. To unsubscribe from this group and stop receiving emails from it, send an email to dealii+unsubscr...@googlegroups.com. For more options, visit https://groups.google.com/d/optout.
Re: [deal.II] Re: Re_Error during installation of dealii.8.4.1
Hi Bruno and Wolfgang I performed a clean installation in a new directory and it still does not work. Now the installation says that there is no write permission on that particular drive after 100% completion. *[100%] Built target deal_II.g* *Install the project...* *-- Install configuration: "DebugRelease"* *CMake Error at cmake/scripts/cmake_install.cmake:36 (FILE):* * file cannot create directory: /path/to/install/dir/share/deal.II/scripts.* * Maybe need administrative privileges.* *Call Stack (most recent call first):* * cmake_install.cmake:37 (INCLUDE)* *make: *** [install] Error 1* I have attached the complete summary and log files. Kindly let me know what can be done. Kind regards Sathish On Friday, 3 February 2017 00:04:11 UTC+1, Wolfgang Bangerth wrote: > > On 02/02/2017 03:41 PM, Sathish Kumar wrote: > > // > > /icpc: command line warning #10006: ignoring unknown option > '-fuse-ld=gold'/ > > /lac/CMakeFiles/obj_lac.debug.dir/sparse_matrix_inst2.cc.o: file not > > recognized: File format not recognized/ > > This typically happens if you compile in the same directory in which a > previous compile job aborted because of a compiler error, because you > were out of memory, or some other reason. In that case, the previous > compiler run left an unfinished object file that the subsequent compiler > run recognizes as "up to date" (because it's newer than its source > files) but can't read successfully. > > The solution is to do 'make clean' or just to blow away the build > directory and start again. > > Best > W. > > -- > > Wolfgang Bangerth email: bang...@colostate.edu > > www: http://www.math.colostate.edu/~bangerth/ > -- The deal.II project is located at http://www.dealii.org/ For mailing list/forum options, see https://groups.google.com/d/forum/dealii?hl=en --- You received this message because you are subscribed to the Google Groups "deal.II User Group" group. To unsubscribe from this group and stop receiving emails from it, send an email to dealii+unsubscr...@googlegroups.com. For more options, visit https://groups.google.com/d/optout. ### # # deal.II configuration: #CMAKE_BUILD_TYPE: DebugRelease #BUILD_SHARED_LIBS: ON #CMAKE_INSTALL_PREFIX: /path/to/install/dir #CMAKE_SOURCE_DIR: /data/leuven/313/vsc31383/dealii/deal.II #(version 8.4.1) #CMAKE_BINARY_DIR: /data/leuven/313/vsc31383/dealii/build #CMAKE_CXX_COMPILER: Intel 15.0.0.20140723 on platform Linux x86_64 # /apps/leuven/thinking/2014a/software/icc/2015.0.090/bin/icpc #CMAKE_C_COMPILER: /apps/leuven/thinking/2014a/software/icc/2015.0.090/bin/icc #CMAKE_Fortran_COMPILER: /apps/leuven/thinking/2014a/software/ifort/2013.5.192/bin/intel64/ifort #CMAKE_GENERATOR:Unix Makefiles # # Base configuration (prior to feature configuration): #DEAL_II_CXX_FLAGS:-fpic -ansi -w2 -wd68 -wd135 -wd175 -wd177 -wd191 -wd193 -wd279 -wd327 -wd383 -wd981 -wd1418 -wd1478 -wd1572 -wd2259 -wd21 -wd2536 -wd15531 -wd111 -wd128 -wd185 -wd280 -qopenmp-simd -Wno-return-type #DEAL_II_CXX_FLAGS_RELEASE:-O2 -no-ansi-alias -ip -funroll-loops -no-vec #DEAL_II_CXX_FLAGS_DEBUG: -O0 -g -gdwarf-2 -grecord-gcc-switches #DEAL_II_LINKER_FLAGS: -Wl,--as-needed -shared-intel -rdynamic -fuse-ld=gold -qopenmp #DEAL_II_LINKER_FLAGS_RELEASE: #DEAL_II_LINKER_FLAGS_DEBUG: #DEAL_II_DEFINITIONS: #DEAL_II_DEFINITIONS_RELEASE: #DEAL_II_DEFINITIONS_DEBUG:DEBUG #DEAL_II_USER_DEFINITIONS: #DEAL_II_USER_DEFINITIONS_REL: #DEAL_II_USER_DEFINITIONS_DEB: DEBUG #DEAL_II_INCLUDE_DIRS #DEAL_II_USER_INCLUDE_DIRS: #DEAL_II_BUNDLED_INCLUDE_DIRS: #DEAL_II_LIBRARIES:m #DEAL_II_LIBRARIES_RELEASE: #DEAL_II_LIBRARIES_DEBUG: # # Configured Features (DEAL_II_ALLOW_BUNDLED = ON, DEAL_II_ALLOW_AUTODETECTION = ON): # ( DEAL_II_WITH_64BIT_INDICES = OFF ) # ( DEAL_II_WITH_ARPACK = OFF ) #DEAL_II_WITH_BOOST set up with bundled packages #BOOST_BUNDLED_INCLUDE_DIRS = /data/leuven/313/vsc31383/dealii/deal.II/bundled/boost-1.56.0/include #BOOST_LIBRARIES = rt # ( DEAL_II_WITH_BZIP2 = OFF ) # ( DEAL_II_WITH_CXX11 = OFF ) # ( DEAL_II_WITH_CXX14 = OFF ) # ( DEAL_II_WITH_HDF5 = OFF ) #DEAL_II_WITH_LAPACK set up with external dependencies #LAPACK_LINKER_FLAGS = #LAPACK_LIBRARIES = /apps/leuven/t
