[OMPI users] File locking in ADIO, OpenMPI 1.6.4

2014-04-08 Thread Daniel Milroy
Hello, Recently a couple of our users have experienced difficulties with compute jobs failing with OpenMPI 1.6.4 compiled against GCC 4.7.2, with the nodes running kernel 2.6.32-279.5.2.el6.x86_64. The error is: File locking failed in ADIOI_Set_lock(fd 7,cmd F_SETLKW/7,type F_WRLCK/1,whence 0

Re: [OMPI users] File locking in ADIO, OpenMPI 1.6.4

2014-04-14 Thread Daniel Milroy
Subject: Re: [OMPI users] File locking in ADIO, OpenMPI 1.6.4 Sorry for the delay in replying. Can you try upgrading to Open MPI 1.8, which was released last week? We refreshed the version of ROMIO that is included in OMPI 1.8 vs. 1.6. On Apr 8, 2014, at 6:49 PM, Daniel Milroy wrote: > He

Re: [OMPI users] File locking in ADIO, OpenMPI 1.6.4

2014-04-15 Thread Daniel Milroy
¹t know but will pass these questions on to the users. Thank you, Dan Milroy On 4/14/14, 2:23 PM, "Rob Latham" wrote: > > >On 04/08/2014 05:49 PM, Daniel Milroy wrote: >> Hello, >> >> The file system in question is indeed Lustre, and mounting with flock

[OMPI users] Segfault on mpirun with OpenMPI 1.4.5rc2

2012-01-31 Thread Daniel Milroy
Hello, I have built OpenMPI 1.4.5rc2 with Intel 12.1 compilers in an HPC environment. We are running RHEL 5, kernel 2.6.18-238 with Intel Xeon X5660 cpus. You can find my build options below. In an effort to test the OpenMPI build, I compiled "Hello world" with an mpi_init call in C and Fortran

Re: [OMPI users] Segfault on mpirun with OpenMPI 1.4.5rc2

2012-02-01 Thread Daniel Milroy
t; --without-memory-manager configure option? > > > On Jan 31, 2012, at 2:19 PM, Daniel Milroy wrote: > >> Hello, >> >> I have built OpenMPI 1.4.5rc2 with Intel 12.1 compilers in an HPC >> environment.  We are running RHEL 5, kernel 2.6.18-238 with Intel Xeon >>

Re: [OMPI users] Segfault on mpirun with OpenMPI 1.4.5rc2

2012-02-01 Thread Daniel Milroy
Hi Götz, I don't know whether we can implement your suggestion; it is dependent on the terms of our license with Intel. I will take this under advisement. Thank you very much. Dan Milroy 2012/2/1 Götz Waschk : > On Tue, Jan 31, 2012 at 8:19 PM, Daniel Milroy > wrote: >> He