[OMPI users] Checksuming in openmpi 1.4.1

2010-08-31 Thread Gilbert Grosdidier
Bonjour, I'm not sure I understand how to trigger CHECKSUM use inside of OpenMPI 1.4.1 (after digging in the FAQs, I got not explanations, sorry): - Is checksuming activated by default and embedded automatically within the Send/Recv pair mechanism, please ? - If not, which MCA param(S) should I

Re: [OMPI users] High Checkpoint Overhead Ratio

2010-08-31 Thread Joshua Hursey
Have you tried testing without using the NFS? So setting the mca-params.conf to something like: crs_base_snapshot_dir=/tmp/ snapc_base_global_snapshot_dir=/tmp/global snapc_basee_store_in_place=0 This would remove the NFS time from the checkpoint time. However if you are using staging this may o

Re: [OMPI users] Memory allocation error when linking with MPI libraries

2010-08-31 Thread Nicolas Deladerriere
Hi, Thanks Nysal for these details. I also fixed my memory allocation issue using environment variable OMPI_MCA_memory_ptmalloc2_disable which is much more easier (at least in my case) than compiled new openmpi package and install that new package. The point is that it is a bit complicated to hav

[OMPI users] [R] Short survey concerning the use of software engineering in the field of High Performance Computing

2010-08-31 Thread Markus Schmidberger
Dear Colleagues, this is a short survey (21 questions that take about 10 minutes to answer) in context of the research work for my PhD thesis and the Munich Center of Advanced Computing (Project B2). It would be very helpful, if you will take the time to answer my questions concerning the use

[OMPI users] Fwd: Problems with OpenMPI

2010-08-31 Thread Osvaldo Reis
Hi, I wanted to use openmpi, I install with no errors, and when I run de examples in local it work well, but when I specify another host to run it doesn't work. There are no errors but the it doesn't show anything and don't start the process in another host and don't stop to run in localhost. Then

Re: [OMPI users] Fwd: Problems with OpenMPI

2010-08-31 Thread David Zhang
Check firewall, network setting like subnet, and ssh keys? On 8/31/10, Osvaldo Reis wrote: > Hi, I wanted to use openmpi, I install with no errors, and when I run de > examples in local it work well, but when I specify another host to run it > doesn't work. There are no errors but the it doesn't

Re: [OMPI users] Fwd: Problems with OpenMPI

2010-08-31 Thread Osvaldo Reis
Ty David, the problem was my firewall. The server machine is new and who install the OS forgot to desable the iptables. Thanks 2010/8/31 David Zhang > Check firewall, network setting like subnet, and ssh keys? > > On 8/31/10, Osvaldo Reis wrote: > > Hi, I wanted to use openmpi, I install with

Re: [OMPI users] Fwd: Problems with OpenMPI

2010-08-31 Thread Gus Correa
Osvaldo These FAQ may help: http://www.open-mpi.org/faq/?category=rsh Also, make sure the same OpenMPI is either installed on, or accessible by (say via NFS) the "anotherhost". Simple test: 'mpirun -np 8 --host [localhost,anotherhost] hostname' IHIH Gus Correa David Zhang wrote: Check firewa

[OMPI users] Problem including C MPI code from C++ using C linkage

2010-08-31 Thread Patrik Jonsson
Hi all, I'm have a C MPI code that I need to link into my C++ code. As usual, from my C++ code, I do extern "C" { #include "c-code.h" } where c-code.h includes, among other things, mpi.h. This doesn't work, because it appears mpi.h tries to detect whether it's being compiled as C or C++ and inc

[OMPI users] compilation error using pgf90 ver 9.0

2010-08-31 Thread mohamed makhyoun
Dear opem-mpi users: I have got the following error while compiling openmpi using pgf90 ver 9 and CC=gcc How I can run make and avoiding the -pthread flag ?. pgf90-Error-Unknown switch: -pthread make[4]: *** [libmpi_f90.la] Error 1 make[4]: Leaving directory `/home/mohamed/bin/openmpi-1.4.1/bu