Re: [OMPI users] init of component openib returned failure

2010-05-19 Thread Peter Kruse
Hello, thanks for your reply. Jeff Squyres wrote: Try running with: mpirun.openmpi-1.4.1 --mca btl_base_verbose 50 --mca btl self,openib -n 2 --mca btl_openib_verbose 100 ./IMB-MPI1 -npmin 2 PingPong the output is exactly the same as before. Also, are you saying that running the same co

Re: [OMPI users] init of component openib returned failure

2010-05-19 Thread Jeff Squyres (jsquyres)
Ok, we've entered the Land of Really Weird - I've never seen a btl work with one mpi app and not another. Some q's: - are you running both apps on the same nodes? - is anything else running on the nodes at the same time (e.g., other mpi jobs using openfabrics)? - is the imb compiled for ompi 1.

Re: [OMPI users] default hostfile (Ubuntu-9.10)

2010-05-19 Thread Stefan Kuhne
Am 18.05.2010 15:46, schrieb Ralph Castain: Hello, > Starting in the 1.3 series, you have to tell OMPI where to find the > default hostfile. So put this in your default MCA param file: > > orte_default_hostfile= > > That should fix it. > yes it fix it. Thanks, Stefan Kuhne signature.asc De

Re: [OMPI users] init of component openib returned failure

2010-05-19 Thread Peter Kruse
Hi, Jeff Squyres (jsquyres) wrote: Ok, we've entered the Land of Really Weird - I've never seen a btl work with one mpi app and not another. Some q's: - are you running both apps on the same nodes? yes, in fact I'm running them in the same interactive Job. - is anything else running on th

[OMPI users] OpenMPI + IB makes problem (btl_openib_component.c)

2010-05-19 Thread Dr. Vincent Keller
Dear list, One of our users faces problems running his application (large CP2K cases) Cluster: OpenMPI 1.4.2, SLES 9, gcc 4.1.2, OFED 1.4 on Intel Nehalem (5350) The message is: [[45776,1],214][btl_openib_component.c:2951:handle_wc] from node140 to: node400 error polling LP CQ with status LOCAL

Re: [OMPI users] init of component openib returned failure

2010-05-19 Thread Jeff Squyres
On May 19, 2010, at 7:18 AM, Peter Kruse wrote: > > - are you running both apps on the same nodes? > > yes, in fact I'm running them in the same interactive Job. This is truly freaky; I've seen the same thing on Peter's computer. We're working the issue off-list; we'll post the solution when we

Re: [OMPI users] openmpi + share points

2010-05-19 Thread Christophe Peyret
Hello, Thank for the advice, it works with NFS ! But : 1) it doesn't work anymore, if I remove --prefix /Network/opt/openmpi-1.4.2 (is there a way to remove it on OSX, already declared ?) 2) I must use the option -static-intel at link else i have a problem with libiomp5.dylib not found Chri

[OMPI users] Execution don't go back to shell after MPI_Finalize()

2010-05-19 Thread Yves Caniou
Dear all, I use the following code: #include "stdlib.h" #include "stdio.h" #include "mpi.h" #include "math.h" #include "unistd.h" /* sleep */ int my_num, mpi_size ; int main(int argc, char *argv[]) { MPI_Init(&argc, &argv) ; MPI_Comm_rank(MPI_COMM_WORLD, &my_num); MPI_Comm_size(MPI_COMM_

Re: [OMPI users] openmpi + share points

2010-05-19 Thread Jeff Squyres
On May 19, 2010, at 5:12 AM, Christophe Peyret wrote: > 1) it doesn't work anymore, if I remove --prefix /Network/opt/openmpi-1.4.2 > (is there a way to remove it on OSX, already declared ?) I'm assuming you're referring to shared libraries and/or executables not being found if you don't speci

[OMPI users] Some Questions on Building OMPI on Linux Em64t

2010-05-19 Thread Michael E. Thomadakis
Hello, I would like to build OMPI V1.4.2 and make it available to our users at the Supercomputing Center at TAMU. Our system is a 2-socket, 4-core Nehalem @2.8GHz, 24GiB DRAM / node, 324 nodes connected to 4xQDR Voltaire fabric, CentOS/RHEL 5.4. I have been trying to find the following informa

[OMPI users] Allgather in inter-communicator bug,

2010-05-19 Thread Battalgazi YILDIRIM
Hi, I am trying to use intercommunicator ::Allgather between two child process. I have fortran and Python code, I am using mpi4py for python. It seems that ::Allgather is not working properly in my desktop. I have contacted first mpi4py developers (Lisandro Dalcin), he simplified my problem and

[OMPI users] How to show outputs from MPI program that runs on a cluster?

2010-05-19 Thread Sang Chul Choi
Hi, I am wondering if there is a way to run a particular process among multiple processes on the console of a linux cluster. I want to see the screen output (standard output) of a particular process (using a particular ID of a process) on the console screen while the MPI program is running. I