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Sergio Anibal de Carvalho Junior <[EMAIL PROTECTED]> described the package as follows: License: gpl Other License: Package: NeoBio System name: neobio Type: non-GNU Description: NeoBio is a Java class library of computational biology algorithms. The initial version will consist mainly of pairwise sequence alignment algorithms such as the classical dynamic programming methods of Needleman & Wunsch (global alignment) and Smith & Waterman (local alignment). A more efficient approach, due to M. Crochemore, G. Landau and M. Ziv-Ukelson (2002) will also be available. All sequence alignment algorithms will support simple scoring schemes as well as substitution matrices such as standard BLOSUM and PAM matrices with constant (linear) gap penalty functions only. Future versions may contain related algorithms such as multiple sequence alignment, database search and protein structure prediction. NeoBio will also provide simple GUI and command line based tools to run the sequence alignment algorithms on DNA and protein sequences. No source code is available online at the moment. Other Software Required: No dependencies; NeoBio will use core Java packages only, these will propably include IO and Collections. Other Comments: _______________________________________________ Message sent via/by Savannah http://savannah.nongnu.org/ _______________________________________________ Savannah-hackers mailing list [EMAIL PROTECTED] http://mail.gnu.org/mailman/listinfo/savannah-hackers
