I was working on an issue on sagemath and have submitted a PR for that but now I am not able to build sage from Also the PR <https://github.com/sagemath/sage/pull/39633> right now is failing almost all the different builds fail but this was not the issue 2 days ago right now whenever i run make I am getting the following The following package(s) may have failed to build (not necessarily during this run of 'make all-start'): * package: brial-1.2.8 last build time: Mar 3 14:32 log file: SAGE_ROOT/logs/pkgs/brial-1.2.8.log build directory: SAGE_ROOT/local/var/tmp/sage/build/brial-1.2.8 * package: sagelib-10.6.beta9 last build time: Mar 24 13:16 log file: SAGE_ROOT/logs/pkgs/sagelib-10.6.beta9.log * package: sage_conf-10.6.beta9 last build time: Mar 24 13:16 log file: SAGE_ROOT/logs/pkgs/sage_conf-10.6.beta9.log * package: sagemath_doc_html-none last build time: Mar 24 17:48 log file: SAGE_ROOT/logs/pkgs/sagemath_doc_html-none.log build directory: SAGE_ROOT/local/var/tmp/sage/build/sagemath_doc_html-none I am using conda to build sage and it was working pretty well before the last merge that happened 2 days ago I thing the build is failing because of cascading errors caused by this I have also shared the log file for brial.log with you guys
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Attempting to download package brial-1.2.8.tar.bz2 from mirrors https://github.com/sagemath/sage/releases/download/10.6/brial-1.2.8.tar.bz2 [xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx] ERROR [transfer|run:135]: [Errno socket error] [Errno 404] Not Found: '//github.com/sagemath/sage/releases/download/10.6/brial-1.2.8.tar.bz2' Exception ignored in: <http.client.HTTPResponse object at 0x7a451c9a98a0> Traceback (most recent call last): File "/home/devansh/.conda/envs/sage-build/lib/python3.13/http/client.py", line 432, in close super().close() # set "closed" flag File "/home/devansh/.conda/envs/sage-build/lib/python3.13/http/client.py", line 445, in flush self.fp.flush() ValueError: I/O operation on closed file. https://github.com/sagemath/sage/releases/download/10.5/brial-1.2.8.tar.bz2 [Exception ignored in: <http.client.HTTPResponse object at 0x7a451c9aabc0> Traceback (most recent call last): File "/home/devansh/.conda/envs/sage-build/lib/python3.13/http/client.py", line 432, in close super().close() # set "closed" flag File "/home/devansh/.conda/envs/sage-build/lib/python3.13/http/client.py", line 445, in flush self.fp.flush() ValueError: I/O operation on closed file. ......................................................................] Setting up build directory /home/devansh/dev/gsoc/sage/local/var/tmp/sage/build/brial-1.2.8 No patch files found in ../patches Host system: Linux devansh 6.13.4-arch1-1 #1 SMP PREEMPT_DYNAMIC Sat, 22 Feb 2025 00:37:05 +0000 x86_64 GNU/Linux C compiler: /home/devansh/.conda/envs/sage-build/bin/x86_64-conda-linux-gnu-cc, Reading specs from /home/devansh/.conda/envs/sage-build/bin/../lib/gcc/x86_64-conda-linux-gnu/13.3.0/specs, could not find specs file conda.specs, COLLECT_GCC=/home/devansh/.conda/envs/sage-build/bin/x86_64-conda-linux-gnu-cc, COLLECT_LTO_WRAPPER=/home/devansh/.conda/envs/sage-build/bin/../libexec/gcc/x86_64-conda-linux-gnu/13.3.0/lto-wrapper, Target: x86_64-conda-linux-gnu, Configured with: ../configure --prefix=/home/conda/feedstock_root/build_artifacts/gcc_compilers_1740237997146/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho --with-slibdir=/home/conda/feedstock_root/build_artifacts/gcc_compilers_1740237997146/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib --libdir=/home/conda/feedstock_root/build_artifacts/gcc_compilers_1740237997146/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib --mandir=/home/conda/feedstock_root/build_artifacts/gcc_compilers_1740237997146/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/man --build=x86_64-conda-linux-gnu --host=x86_64-conda-linux-gnu --target=x86_64-conda-linux-gnu --enable-languages=c,c++,fortran,objc,obj-c++ --enable-__cxa_atexit --disable-libmudflap --enable-libgomp --disable-libssp --enable-libquadmath --enable-libquadmath-support --enable-lto --enable-target-optspace --enable-plugin --enable-gold --disable-nls --disable-bootstrap --disable-multilib --enable-long-long --with-sysroot=/home/conda/feedstock_root/build_artifacts/gcc_compilers_1740237997146/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/x86_64-conda-linux-gnu/sysroot --with-build-sysroot=/home/conda/feedstock_root/build_artifacts/gcc_compilers_1740237997146/work/cf-compilers/x86_64-conda-linux-gnu/sysroot --with-native-system-header-dir=/usr/include --with-gxx-include-dir=/home/conda/feedstock_root/build_artifacts/gcc_compilers_1740237997146/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/gcc/x86_64-conda-linux-gnu/13.3.0/include/c++ --with-pkgversion='conda-forge gcc 13.3.0-2' --with-bugurl=https://github.com/conda-forge/ctng-compilers-feedstock/issues/new/choose --enable-libsanitizer --enable-default-pie --enable-threads=posix, Thread model: posix, Supported LTO compression algorithms: zlib, gcc version 13.3.0 (conda-forge gcc 13.3.0-2) No stamp file for package 'brial' in /home/devansh/dev/gsoc/sage/local/var/lib/sage/installed No spkg-legacy-uninstall script; nothing to do [spkg-install] Configuring brial-1.2.8 [spkg-install] configure: WARNING: unrecognized options: --disable-maintainer-mode [spkg-install] checking for a BSD-compatible install... /usr/bin/install -c [spkg-install] checking whether build environment is sane... yes [spkg-install] checking for a thread-safe mkdir -p... /usr/bin/mkdir -p [spkg-install] checking for gawk... gawk [spkg-install] checking whether make sets $(MAKE)... yes [spkg-install] checking whether make supports nested variables... yes [spkg-install] checking whether UID '1000' is supported by ustar format... yes [spkg-install] checking whether GID '1000' is supported by ustar format... yes [spkg-install] checking how to create a ustar tar archive... gnutar [spkg-install] checking for style of include used by make... 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[spkg-install] checking for libpng... yes [spkg-install] checking that generated files are newer than configure... done [spkg-install] configure: creating ./config.status [spkg-install] config.status: creating Makefile [spkg-install] config.status: creating cudd/Makefile [spkg-install] config.status: creating groebner/Makefile [spkg-install] config.status: creating groebner/include/Makefile [spkg-install] config.status: creating groebner/src/Makefile [spkg-install] config.status: creating libbrial/Makefile [spkg-install] config.status: creating libbrial/include/Makefile [spkg-install] config.status: creating libbrial/src/Makefile [spkg-install] config.status: creating tests/Makefile [spkg-install] config.status: creating config_dummy.h [spkg-install] config.status: creating libbrial/include/polybori/config.h [spkg-install] config.status: libbrial/include/polybori/config.h is unchanged [spkg-install] config.status: executing depfiles commands [spkg-install] config.status: executing libtool commands [spkg-install] configure: WARNING: unrecognized options: --disable-maintainer-mode [spkg-install] Building brial-1.2.8 [spkg-install] make all-recursive [spkg-install] Making all in cudd [spkg-install] /usr/bin/bash ../libtool --tag=CC --mode=compile /home/devansh/.conda/envs/sage-build/bin/x86_64-conda-linux-gnu-cc -DHAVE_CONFIG_H -I. -I.. -I../libbrial/include/polybori -I../groebner/include -I../libbrial/include -I../libbrial/include -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem /home/devansh/.conda/envs/sage-build/include -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/devansh/.conda/envs/sage-build/include -c -o cuddAPI.lo cuddAPI.c [spkg-install] libtool: compile: /home/devansh/.conda/envs/sage-build/bin/x86_64-conda-linux-gnu-cc -DHAVE_CONFIG_H -I. -I.. -I../libbrial/include/polybori -I../groebner/include -I../libbrial/include -I../libbrial/include -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem /home/devansh/.conda/envs/sage-build/include -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/devansh/.conda/envs/sage-build/include -c cuddAPI.c -fPIC -DPIC -o .libs/cuddAPI.o [spkg-install] /usr/bin/bash ../libtool --tag=CC --mode=compile /home/devansh/.conda/envs/sage-build/bin/x86_64-conda-linux-gnu-cc -DHAVE_CONFIG_H -I. -I.. -I../libbrial/include/polybori -I../groebner/include -I../libbrial/include -I../libbrial/include -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem /home/devansh/.conda/envs/sage-build/include -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/devansh/.conda/envs/sage-build/include -c -o cuddCache.lo cuddCache.c [spkg-install] libtool: compile: /home/devansh/.conda/envs/sage-build/bin/x86_64-conda-linux-gnu-cc -DHAVE_CONFIG_H -I. -I.. -I../libbrial/include/polybori -I../groebner/include 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-DHAVE_CONFIG_H -I. -I.. -I../libbrial/include/polybori -I../groebner/include -I../libbrial/include -I../libbrial/include -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem /home/devansh/.conda/envs/sage-build/include -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/devansh/.conda/envs/sage-build/include -c cuddInit.c -fPIC -DPIC -o .libs/cuddInit.o [spkg-install] /usr/bin/bash ../libtool --tag=CC --mode=compile /home/devansh/.conda/envs/sage-build/bin/x86_64-conda-linux-gnu-cc -DHAVE_CONFIG_H -I. -I.. -I../libbrial/include/polybori -I../groebner/include -I../libbrial/include -I../libbrial/include -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem /home/devansh/.conda/envs/sage-build/include -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/devansh/.conda/envs/sage-build/include -c -o cuddLCache.lo cuddLCache.c [spkg-install] libtool: compile: /home/devansh/.conda/envs/sage-build/bin/x86_64-conda-linux-gnu-cc -DHAVE_CONFIG_H -I. -I.. -I../libbrial/include/polybori -I../groebner/include -I../libbrial/include -I../libbrial/include -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem /home/devansh/.conda/envs/sage-build/include -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/devansh/.conda/envs/sage-build/include -c cuddLCache.c -fPIC -DPIC -o .libs/cuddLCache.o [spkg-install] /usr/bin/bash ../libtool --tag=CC --mode=compile /home/devansh/.conda/envs/sage-build/bin/x86_64-conda-linux-gnu-cc -DHAVE_CONFIG_H -I. -I.. -I../libbrial/include/polybori -I../groebner/include -I../libbrial/include -I../libbrial/include -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem /home/devansh/.conda/envs/sage-build/include -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/devansh/.conda/envs/sage-build/include -c -o cuddRef.lo cuddRef.c [spkg-install] libtool: compile: /home/devansh/.conda/envs/sage-build/bin/x86_64-conda-linux-gnu-cc -DHAVE_CONFIG_H -I. -I.. -I../libbrial/include/polybori -I../groebner/include -I../libbrial/include -I../libbrial/include -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem /home/devansh/.conda/envs/sage-build/include -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/devansh/.conda/envs/sage-build/include -c cuddRef.c -fPIC -DPIC -o .libs/cuddRef.o [spkg-install] /usr/bin/bash ../libtool --tag=CC --mode=compile /home/devansh/.conda/envs/sage-build/bin/x86_64-conda-linux-gnu-cc -DHAVE_CONFIG_H -I. -I.. -I../libbrial/include/polybori -I../groebner/include -I../libbrial/include -I../libbrial/include -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem /home/devansh/.conda/envs/sage-build/include -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/devansh/.conda/envs/sage-build/include -c -o cuddTable.lo cuddTable.c [spkg-install] libtool: compile: /home/devansh/.conda/envs/sage-build/bin/x86_64-conda-linux-gnu-cc -DHAVE_CONFIG_H -I. -I.. -I../libbrial/include/polybori -I../groebner/include -I../libbrial/include -I../libbrial/include -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem /home/devansh/.conda/envs/sage-build/include -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/devansh/.conda/envs/sage-build/include -c cuddTable.c -fPIC -DPIC -o .libs/cuddTable.o [spkg-install] /usr/bin/bash ../libtool --tag=CC --mode=compile /home/devansh/.conda/envs/sage-build/bin/x86_64-conda-linux-gnu-cc -DHAVE_CONFIG_H -I. -I.. -I../libbrial/include/polybori -I../groebner/include -I../libbrial/include -I../libbrial/include -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem /home/devansh/.conda/envs/sage-build/include -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/devansh/.conda/envs/sage-build/include -c -o cuddZddFuncs.lo cuddZddFuncs.c [spkg-install] libtool: compile: /home/devansh/.conda/envs/sage-build/bin/x86_64-conda-linux-gnu-cc -DHAVE_CONFIG_H -I. -I.. -I../libbrial/include/polybori -I../groebner/include -I../libbrial/include -I../libbrial/include -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem /home/devansh/.conda/envs/sage-build/include -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/devansh/.conda/envs/sage-build/include -c cuddZddFuncs.c -fPIC -DPIC -o .libs/cuddZddFuncs.o [spkg-install] /usr/bin/bash ../libtool --tag=CC --mode=compile /home/devansh/.conda/envs/sage-build/bin/x86_64-conda-linux-gnu-cc -DHAVE_CONFIG_H -I. -I.. -I../libbrial/include/polybori -I../groebner/include -I../libbrial/include -I../libbrial/include -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem /home/devansh/.conda/envs/sage-build/include -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/devansh/.conda/envs/sage-build/include -c -o cuddZddSetop.lo cuddZddSetop.c [spkg-install] libtool: compile: /home/devansh/.conda/envs/sage-build/bin/x86_64-conda-linux-gnu-cc -DHAVE_CONFIG_H -I. -I.. -I../libbrial/include/polybori -I../groebner/include -I../libbrial/include -I../libbrial/include -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem /home/devansh/.conda/envs/sage-build/include -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/devansh/.conda/envs/sage-build/include -c cuddZddSetop.c -fPIC -DPIC -o .libs/cuddZddSetop.o [spkg-install] /usr/bin/bash ../libtool --tag=CC --mode=link /home/devansh/.conda/envs/sage-build/bin/x86_64-conda-linux-gnu-cc -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/devansh/.conda/envs/sage-build/include -Wl,-rpath-link,/home/devansh/dev/gsoc/sage/local/lib -L/home/devansh/dev/gsoc/sage/local/lib -Wl,-rpath,/home/devansh/dev/gsoc/sage/local/lib -Wl,-rpath-link,/home/devansh/dev/gsoc/sage/local/lib -L/home/devansh/dev/gsoc/sage/local/lib -Wl,-rpath,/home/devansh/dev/gsoc/sage/local/lib -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,--allow-shlib-undefined -Wl,-rpath,/home/devansh/.conda/envs/sage-build/lib -Wl,-rpath-link,/home/devansh/.conda/envs/sage-build/lib -L/home/devansh/.conda/envs/sage-build/lib -o libcudd.la cuddAPI.lo cuddCache.lo cuddInit.lo cuddLCache.lo cuddRef.lo cuddTable.lo cuddZddFuncs.lo cuddZddSetop.lo [spkg-install] libtool: link: /home/devansh/.conda/envs/sage-build/bin/x86_64-conda-linux-gnu-ar cru .libs/libcudd.a .libs/cuddAPI.o .libs/cuddCache.o .libs/cuddInit.o .libs/cuddLCache.o .libs/cuddRef.o .libs/cuddTable.o .libs/cuddZddFuncs.o .libs/cuddZddSetop.o [spkg-install] libtool: link: /home/devansh/.conda/envs/sage-build/bin/x86_64-conda-linux-gnu-ranlib .libs/libcudd.a [spkg-install] libtool: link: ( cd ".libs" && rm -f "libcudd.la" && ln -s "../libcudd.la" "libcudd.la" ) [spkg-install] Making all in libbrial [spkg-install] Making all in src [spkg-install] /usr/bin/bash ../../libtool --tag=CXX --mode=compile /home/devansh/.conda/envs/sage-build/bin/x86_64-conda-linux-gnu-c++ -DHAVE_CONFIG_H -I. -I../.. -I../../libbrial/include/polybori -I../../groebner/include -I../../libbrial/include -I../../libbrial/include -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem /home/devansh/.conda/envs/sage-build/include -ftemplate-depth-100 -fvisibility-inlines-hidden -fmessage-length=0 -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/devansh/.conda/envs/sage-build/include -c -o BlockDegLexOrder.lo BlockDegLexOrder.cc [spkg-install] libtool: compile: /home/devansh/.conda/envs/sage-build/bin/x86_64-conda-linux-gnu-c++ -DHAVE_CONFIG_H -I. -I../.. -I../../libbrial/include/polybori -I../../groebner/include -I../../libbrial/include -I../../libbrial/include -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem /home/devansh/.conda/envs/sage-build/include -ftemplate-depth-100 -fvisibility-inlines-hidden -fmessage-length=0 -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/devansh/.conda/envs/sage-build/include -c BlockDegLexOrder.cc -fPIC -DPIC -o .libs/BlockDegLexOrder.o [spkg-install] In file included from ../../libbrial/include/polybori/routines/pbori_func.h:22, [spkg-install] from ../../libbrial/include/polybori/ring/CCuddInterface.h:25, [spkg-install] from ../../libbrial/include/polybori/ring/CCuddCore.h:22, [spkg-install] from ../../libbrial/include/polybori/BoolePolyRing.h:24, [spkg-install] from ../../libbrial/include/polybori/BoolePolynomial.h:30, [spkg-install] from ../../libbrial/include/polybori/orderings/COrderingFacade.h:22, [spkg-install] from ../../libbrial/include/polybori/orderings/CBlockOrderingFacade.h:19, [spkg-install] from ../../libbrial/include/polybori/BlockDegLexOrder.h:22, [spkg-install] from BlockDegLexOrder.cc:18: [spkg-install] ../../libbrial/include/polybori/common/traits.h:26:10: fatal error: boost/preprocessor/cat.hpp: No such file or directory [spkg-install] 26 | #include <boost/preprocessor/cat.hpp> [spkg-install] | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [spkg-install] compilation terminated. [spkg-install] make[8]: *** [Makefile:446: BlockDegLexOrder.lo] Error 1 [spkg-install] make[7]: *** [Makefile:374: all-recursive] Error 1 [spkg-install] make[6]: *** [Makefile:577: all-recursive] Error 1 [spkg-install] make[5]: *** [Makefile:433: all] Error 2 [spkg-install] ******************************************************************************** [spkg-install] Error building brial-1.2.8 [spkg-install] ******************************************************************************** ************************************************************************ Error installing package brial-1.2.8 ************************************************************************ Please email sage-devel (http://groups.google.com/group/sage-devel) explaining the problem and including the log files /home/devansh/dev/gsoc/sage/logs/pkgs/brial-1.2.8.log and /home/devansh/dev/gsoc/sage/config.log Describe your computer, operating system, etc. If you want to try to fix the problem yourself, *don't* just cd to /home/devansh/dev/gsoc/sage/local/var/tmp/sage/build/brial-1.2.8 and type 'make' or whatever is appropriate. Instead, the following commands setup all environment variables correctly and load a subshell for you to debug the error: (cd '/home/devansh/dev/gsoc/sage/local/var/tmp/sage/build/brial-1.2.8' && '/home/devansh/dev/gsoc/sage/sage' --buildsh) When you are done debugging, you can type "exit" to leave the subshell. ************************************************************************ real 0m13.160s user 0m5.508s sys 0m5.236s
